Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g03970 Nelumbo nucifera HOM05D004029 ORTHO05D004613 0.0e+00 2533.8 1259 100.0
GSVIVG01014409001 Vitis vinifera HOM05D004029 ORTHO05D004613 0.0e+00 2103.6 1261 82.2
CSS0001233 Camellia sinensis var. sinensis HOM05D004029 ORTHO05D004613 0.0e+00 2098.9 1258 81.6
CSS0038840 Camellia sinensis var. sinensis HOM05D004029 ORTHO05D004613 0.0e+00 2096.2 1258 81.5
Cfa020529 Carpinus fangiana HOM05D004029 ORTHO05D004613 0.0e+00 2083.5 1264 80.8
Aqoxy7G04099 Aquilegia oxysepala HOM05D004029 ORTHO05D004613 0.0e+00 2075.1 1257 80.9
PSO675G2841 Papaver somniferum HOM05D004029 ORTHO05D004613 0.0e+00 2073.9 1262 80.6
PSO541G4143 Papaver somniferum HOM05D004029 ORTHO05D004613 0.0e+00 2072.4 1262 80.5
Actinidia05171 Actinidia chinensis HOM05D004029 ORTHO05D004613 0.0e+00 2067.0 1257 80.1
CiPaw.11G174500 Carya illinoinensis HOM05D004029 ORTHO05D004613 0.0e+00 2058.5 1261 80.5
COL.COLO4_03559 Corchorus olitorius HOM05D004029 ORTHO05D004613 0.0e+00 2053.1 1260 79.5
Potri.011G123900 Populus trichocarpa HOM05D004029 ORTHO05D004613 0.0e+00 2051.6 1259 80.0
Duzib268G1628 Durio zibethinus HOM05D004029 ORTHO05D004613 0.0e+00 2050.8 1268 79.4
Thecc.07G074600 Theobroma cacao HOM05D004029 ORTHO05D004613 0.0e+00 2049.2 1261 79.7
Prupe.4G187500 Prunus persica HOM05D004029 ORTHO05D004613 0.0e+00 2035.8 1261 79.1
MD11G1239600 Malus domestica HOM05D004029 ORTHO05D004613 0.0e+00 2030.8 1261 78.4
TWI38G0763 Tripterygium wilfordii HOM05D004029 ORTHO05D004613 0.0e+00 2029.6 1259 79.1
Duzib213G0443 Durio zibethinus HOM05D004029 ORTHO05D004613 0.0e+00 2020.4 1268 78.2
Manes.03G114700 Manihot esculenta HOM05D004029 ORTHO05D004613 0.0e+00 2018.8 1265 78.8
CANSAT11G2434 Cannabis sativa HOM05D004029 ORTHO05D004613 0.0e+00 2015.7 1260 78.7
Gohir.D01G054200 Gossypium hirsutum HOM05D004029 ORTHO05D004613 0.0e+00 2014.6 1260 78.1
MD03G1222200 Malus domestica HOM05D004029 ORTHO05D004613 0.0e+00 2013.8 1261 78.3
FAN21G1497 Fragaria x ananassa HOM05D004029 ORTHO05D004613 0.0e+00 2012.7 1260 78.3
Sabra11G0109200 Salix brachista HOM05D004029 ORTHO05D004613 0.0e+00 2011.5 1301 76.9
Rhsim06G0193700 Rhododendron simsii HOM05D004029 ORTHO05D004613 0.0e+00 2009.6 1255 79.1
Gorai.002G074000 Gossypium raimondii HOM05D004029 ORTHO05D004613 0.0e+00 2008.0 1260 77.9
RcHm_v2.0_Chr5g0034971 Rosa chinensis HOM05D004029 ORTHO05D004613 0.0e+00 2004.6 1276 77.6
FAN25G1694 Fragaria x ananassa HOM05D004029 ORTHO05D004613 0.0e+00 2003.0 1260 77.9
FAN16G1973 Fragaria x ananassa HOM05D004029 ORTHO05D004613 0.0e+00 2002.3 1260 77.9
FAN11G1114 Fragaria x ananassa HOM05D004029 ORTHO05D004613 0.0e+00 2000.7 1260 77.9
FvH4_3g20750 Fragaria vesca HOM05D004029 ORTHO05D004613 0.0e+00 1999.2 1261 78.0
CsaV3_3G044490 Cucumis sativus L. HOM05D004029 ORTHO05D004613 0.0e+00 1990.7 1260 77.7
Eucgr.F03341 Eucalyptus grandis HOM05D004029 ORTHO05D004613 0.0e+00 1987.2 1263 77.4
Haze_09504 Corylus avellana HOM05D004029 ORTHO05D004613 0.0e+00 1981.1 1251 78.7
PGR031G0420 Punica granatum HOM05D004029 ORTHO05D004613 0.0e+00 1980.3 1259 77.3
vmacro11822 Vaccinium macrocarpon HOM05D004029 ORTHO05D004613 0.0e+00 1976.1 1283 76.5
QL08p019114 Quercus lobata HOM05D004029 ORTHO05D004613 0.0e+00 1968.4 1518 67.3
THA.LOC104811852 Tarenaya hassleriana HOM05D004029 ORTHO05D004613 0.0e+00 1961.8 1261 76.0
Lj3g0020332 Lotus japonicus HOM05D004029 ORTHO05D004613 0.0e+00 1960.7 1258 76.6
Glyma.13G280700 Glycine max HOM05D004029 ORTHO05D004613 0.0e+00 1958.3 1260 76.7
Ca_01815_v3 Cicer arietinum L. HOM05D004029 ORTHO05D004613 0.0e+00 1953.3 1258 76.5
Ah.06g183680 Amaranthus hybridus HOM05D004029 ORTHO05D004613 0.0e+00 1951.0 1259 75.4
Carub.0008s1474 Capsella rubella HOM05D004029 ORTHO05D004613 0.0e+00 1949.5 1260 76.0
Phvul.005G085200 Phaseolus vulgaris HOM05D004029 ORTHO05D004613 0.0e+00 1948.7 1258 76.2
ATR0064G128 Amborella trichopoda HOM05D004029 ORTHO05D004613 0.0e+00 1946.4 1269 75.6
AUR62015624 Chenopodium quinoa HOM05D004029 ORTHO05D004613 0.0e+00 1943.7 1262 75.4
Sc03g0009690 Simmondsia chinensis HOM05D004029 ORTHO05D004613 0.0e+00 1941.8 1290 74.1
Sp6g16420 Schrenkiella parvula HOM05D004029 ORTHO05D004613 0.0e+00 1940.6 1263 75.8
Peaxi162Scf01111g00112 Petunia axillaris HOM05D004029 ORTHO05D004613 0.0e+00 1940.2 1261 76.4
CARHR267710 Cardamine hirsuta HOM05D004029 ORTHO05D004613 0.0e+00 1939.9 1260 75.6
AT5G54440 Arabidopsis thaliana HOM05D004029 ORTHO05D004613 0.0e+00 1939.1 1260 75.6
Medtr2g080050 Medicago truncatula HOM05D004029 ORTHO05D004613 0.0e+00 1936.4 1258 75.9
Hund02202 Selenicereus undatus HOM05D004029 ORTHO05D004613 0.0e+00 1933.7 1243 76.9
Psat5g246120 Pisum sativum HOM05D004029 ORTHO05D004613 0.0e+00 1933.3 1274 75.2
AUR62029337 Chenopodium quinoa HOM05D004029 ORTHO05D004613 0.0e+00 1932.1 1262 74.9
Thhalv10012467m.g Eutrema salsugineum HOM05D004029 ORTHO05D004613 0.0e+00 1932.1 1262 75.1
ClCG11G018320 Citrullus lanatus HOM05D004029 ORTHO05D004613 0.0e+00 1930.2 1328 73.2
Lalb_Chr25g0286611 Lupinus albus HOM05D004029 ORTHO05D004613 0.0e+00 1927.5 1258 75.4
Sopen07g031610 Solanum pennellii HOM05D004029 ORTHO05D004613 0.0e+00 1925.2 1260 75.4
arahy.Tifrunner.gnm1.ann1.3J4V9H Arachis hypogaea HOM05D004029 ORTHO05D004613 0.0e+00 1924.8 1259 75.1
Aa31LG3G10350 Aethionema arabicum HOM05D004029 ORTHO05D004613 0.0e+00 1923.7 1262 74.7
EL10Ac4g08092 Beta vulgaris HOM05D004029 ORTHO05D004613 0.0e+00 1921.7 1259 74.7
Solyc07g063440.3 Solanum lycopersicum HOM05D004029 ORTHO05D004613 0.0e+00 1921.0 1261 75.3
MSTRG.12924 Avicennia marina HOM05D004029 ORTHO05D004613 0.0e+00 1916.0 1260 74.7
A02p10290 Brassica napus HOM05D004029 ORTHO05D004613 0.0e+00 1916.0 1267 74.5
BraA02t06097Z Brassica rapa HOM05D004029 ORTHO05D004613 0.0e+00 1912.5 1273 74.2
BcaC03g14313 Brassica carinata HOM05D004029 ORTHO05D004613 0.0e+00 1911.3 1267 74.3
C02p17030 Brassica napus HOM05D004029 ORTHO05D004613 0.0e+00 1911.0 1268 74.3
Lj1C850G7 Lonicera japonica HOM05D004029 ORTHO05D004613 0.0e+00 1911.0 1272 75.6
arahy.Tifrunner.gnm1.ann1.IWX37I Arachis hypogaea HOM05D004029 ORTHO05D004613 0.0e+00 1910.6 1285 73.8
BolC2t07800H Brassica oleracea HOM05D004029 ORTHO05D004613 0.0e+00 1908.6 1268 74.4
BcaB05g22133 Brassica carinata HOM05D004029 ORTHO05D004613 0.0e+00 1908.3 1261 74.1
HanXRQChr10g0289491 Helianthus annuus HOM05D004029 ORTHO05D004613 0.0e+00 1907.5 1260 74.3
CAN.G162.91 Capsicum annuum HOM05D004029 ORTHO05D004613 0.0e+00 1906.7 1264 75.3
A10p11660 Brassica napus HOM05D004029 ORTHO05D004613 0.0e+00 1903.3 1261 74.3
BcaC04g20340 Brassica carinata HOM05D004029 ORTHO05D004613 0.0e+00 1900.6 1260 74.0
Ca_30535_v3 Cicer arietinum L. HOM05D004029 ORTHO05D004613 0.0e+00 1898.6 1258 75.0
BolC9t57346H Brassica oleracea HOM05D004029 ORTHO05D004613 0.0e+00 1895.9 1261 73.9
DCAR_013079 Daucus carota HOM05D004029 ORTHO05D004613 0.0e+00 1894.0 1270 73.6
BcaB08g35795 Brassica carinata HOM05D004029 ORTHO05D004613 0.0e+00 1893.2 1260 73.7
BraA10t43261Z Brassica rapa HOM05D004029 ORTHO05D004613 0.0e+00 1892.5 1264 74.1
C09p44730 Brassica napus HOM05D004029 ORTHO05D004613 0.0e+00 1889.4 1261 73.6
Migut.H01912 Erythranthe guttata HOM05D004029 ORTHO05D004613 0.0e+00 1889.0 1260 74.4
Ciclev10007273m.g Citrus clementina HOM05D004029 ORTHO05D004613 0.0e+00 1884.4 1258 74.6
Lalb_Chr01g0016971 Lupinus albus HOM05D004029 ORTHO05D004613 0.0e+00 1872.8 1258 73.8
ECA240G1154 Erigeron canadensis HOM05D004029 ORTHO05D004613 0.0e+00 1865.9 1245 74.1
Sed0019496 Sechium edule HOM05D004029 ORTHO05D004613 0.0e+00 1827.4 1167 77.1
SGA_v2.0_scaffold77G25216 Striga asiatica HOM05D004029 ORTHO05D004613 0.0e+00 1822.0 1325 69.4
Lsat_1_v5_gn_9_95861 Lactuca sativa HOM05D004029 ORTHO05D004613 0.0e+00 1808.5 1240 72.7
Lsat_1_v5_gn_7_105721 Lactuca sativa HOM05D004029 ORTHO05D004613 0.0e+00 1799.6 1257 71.0
Os12g0554400 Oryza sativa ssp. japonica HOM05D004029 ORTHO05D004613 0.0e+00 1794.6 1261 69.9
VMungo1080G0798 Vigna mungo HOM05D004029 ORTHO05D004613 0.0e+00 1783.1 1161 75.2
Gorai.007G319300 Gossypium raimondii HOM05D004029 ORTHO05D004613 0.0e+00 1644.8 1069 75.7
Atru.chr2.2811 Acer truncatum HOM05D004029 ORTHO05D004613 0.0e+00 1637.9 1036 78.1
HanXRQChr13g0386411 Helianthus annuus HOM05D004029 ORTHO05D004613 0.0e+00 1632.8 1264 64.5
ECA236G3046 Erigeron canadensis HOM05D004029 ORTHO05D004613 0.0e+00 1631.3 1231 66.8
Oeu008022.1 Olea europaea HOM05D004029 ORTHO05D004613 0.0e+00 1619.8 1096 73.4
Nitab4.5_0001204g0130 Nicotiana tabacum HOM05D004029 ORTHO05D004613 0.0e+00 1617.4 1048 77.4
TAR627G0860 Trochodendron aralioides HOM05D004029 ORTHO05D004613 0.0e+00 1610.5 925 86.4
Glyma.12G220900 Glycine max HOM05D004029 ORTHO05D004613 0.0e+00 1603.6 1007 78.4
AL8G29790 Arabidopsis lyrata HOM05D004029 ORTHO05D004613 0.0e+00 1548.5 1032 74.1
Gohir.A11G282734 Gossypium hirsutum HOM05D004029 ORTHO05D004613 0.0e+00 1538.9 1063 72.5
Nitab4.5_0000815g0060 Nicotiana tabacum HOM05D004029 ORTHO05D004613 0.0e+00 1501.5 1094 71.1
Gohir.D11G296200 Gossypium hirsutum HOM05D004029 ORTHO05D004613 0.0e+00 1438.3 1013 71.3
Gohir.A01G067000 Gossypium hirsutum HOM05D004029 ORTHO05D004613 0.0e+00 1404.0 857 80.5
Mapoly0031s0138 Marchantia polymorpha HOM05D004029 ORTHO05D004613 0.0e+00 1357.4 1397 51.3
Pp3c26_12060 Physcomitrium patens HOM05D004029 ORTHO05D004613 0.0e+00 1263.1 1356 50.5
unitig_0.g2259 Utricularia gibba HOM05D004029 ORTHO05D004613 0.0e+00 1218.0 1261 53.4
MELO3C018224.2 Cucumis melo HOM05D004029 ORTHO05D004613 0.0e+00 1184.1 776 75.0
CDE05G1182 Ceratophyllum demersum HOM05D004029 ORTHO05D004613 0.0e+00 1147.9 864 67.1
Zm00001eb137170 Zea mays HOM05D004029 ORTHO05D004613 0.0e+00 1135.9 747 74.6
Cpa.g.sc80.100 Carica papaya HOM05D004029 ORTHO05D004613 1.5e-301 1040.0 1012 56.2
AagrBONN_evm.TU.Sc2ySwM_344.2130 Anthoceros agrestis HOM05D004029 ORTHO05D004613 5.5e-301 1038.1 1155 48.0
Dinv08327 Davidia involucrata HOM05D004029 ORTHO05D004613 2.0e-271 939.9 593 79.9
Psat4g074000 Pisum sativum HOM05D004029 ORTHO05D004613 6.9e-251 871.7 847 56.3
Gohir.1Z049674 Gossypium hirsutum HOM05D004029 ORTHO05D004613 1.4e-248 864.0 537 79.1
CBR_g48014 Chara braunii HOM05D004029 ORTHO05D004613 2.1e-220 770.4 1437 34.9
Psat3g119680 Pisum sativum HOM05D004029 ORTHO05D004613 7.7e-210 735.3 444 81.3
Dinv08328 Davidia involucrata HOM05D004029 ORTHO05D004613 1.1e-200 704.9 454 75.3
SEGI_15865 Sequoiadendron giganteum HOM05D004029 ORTHO05D004613 8.0e-167 592.4 490 61.8
TAR627G0431 Trochodendron aralioides HOM05D004029 ORTHO05D004613 2.3e-158 564.3 307 88.6
SHI21494 Sapria himalayana HOM05D004029 ORTHO05D004613 1.6e-119 435.3 317 68.5
Rhsim06G0194500 Rhododendron simsii HOM05D004029 ORTHO05D004613 3.4e-101 374.4 205 86.3
SEGI_37124 Sequoiadendron giganteum HOM05D004029 ORTHO05D004613 1.6e-98 365.5 317 63.4
Pp3c3_4080 Physcomitrium patens HOM05D004029 ORTHO05D004613 2.8e-95 354.8 373 49.3
HPP92_020359 Vanilla planifolia HOM05D004029 ORTHO05D004613 1.0e-92 346.3 194 84.5
SMO115G0239 Selaginella moellendorffii HOM05D004029 ORTHO05D004613 9.4e-91 339.7 256 64.8
Atru.chr2.2810 Acer truncatum HOM05D004029 ORTHO05D004613 3.9e-81 307.8 172 83.7
Psat1g176800 Pisum sativum HOM05D004029 ORTHO05D004613 6.7e-81 307.0 209 72.2
Psat1g176880 Pisum sativum HOM05D004029 ORTHO05D004613 8.2e-79 300.1 205 72.2
Dinv08326 Davidia involucrata HOM05D004029 ORTHO05D004613 1.3e-76 292.7 159 88.1
SEGI_39917 Sequoiadendron giganteum HOM05D004029 ORTHO05D004613 3.2e-75 288.1 262 55.7
Lsat_1_v5_gn_3_80381 Lactuca sativa HOM05D004029 ORTHO05D004613 2.1e-74 285.4 258 57.4
Lsat_1_v5_gn_4_112941 Lactuca sativa HOM05D004029 ORTHO05D004613 2.1e-74 285.4 258 57.4
Lsat_1_v5_gn_7_74701 Lactuca sativa HOM05D004029 ORTHO05D004613 2.1e-74 285.4 258 57.4
Atru.chr2.2808 Acer truncatum HOM05D004029 ORTHO05D004613 6.3e-71 273.9 153 86.3
Thhalv10015732m.g Eutrema salsugineum HOM05D004029 ORTHO05D004613 2.7e-69 268.5 181 69.1
HPP92_020356 Vanilla planifolia HOM05D004029 ORTHO05D004613 1.6e-66 259.2 451 35.5
Sed0014205 Sechium edule HOM05D004029 ORTHO05D004613 6.3e-63 247.3 197 63.5
Gohir.1Z049574 Gossypium hirsutum HOM05D004029 ORTHO05D004613 1.8e-62 245.7 165 73.9
Actinidia39414 Actinidia chinensis HOM05D004029 ORTHO05D004613 1.6e-61 242.7 153 73.9
ATR0693G140 Amborella trichopoda HOM05D004029 ORTHO05D004613 1.3e-55 223.0 132 80.3
ATR0693G350 Amborella trichopoda HOM05D004029 ORTHO05D004613 1.7e-52 212.6 150 69.3
Solyc07g063450.3 Solanum lycopersicum HOM05D000461 ORTHO05D001829 1.1e-46 193.4 170 58.2
Gohir.A11G282591 Gossypium hirsutum HOM05D004029 ORTHO05D004613 1.2e-45 189.9 131 64.9
GSVIVG01015766001 Vitis vinifera HOM05D004029 ORTHO05D004613 1.7e-44 186.0 109 75.2
GSVIVG01016530001 Vitis vinifera HOM05D004029 ORTHO05D004613 1.5e-43 183.0 109 75.2
HPP92_020357 Vanilla planifolia HOM05D004029 ORTHO05D004613 9.5e-43 180.3 120 75.8
GSVIVG01005601001 Vitis vinifera HOM05D004029 ORTHO05D004613 6.2e-42 177.6 109 73.4
GSVIVG01006099001 Vitis vinifera HOM05D004029 ORTHO05D004613 6.2e-42 177.6 109 73.4
Lsat_1_v5_gn_8_16361 Lactuca sativa HOM05D004029 ORTHO05D004613 1.1e-41 176.8 124 70.2
HPP92_027774 Vanilla planifolia HOM05D004029 ORTHO05D004613 2.6e-40 172.2 98 82.7
GSVIVG01030797001 Vitis vinifera HOM05D004029 ORTHO05D004613 2.6e-40 172.2 106 72.6
Dinv22372 Davidia involucrata HOM05D004029 ORTHO05D004613 7.5e-40 170.6 116 71.6
Psat7g242400 Pisum sativum HOM05D004029 ORTHO05D004613 2.4e-38 165.6 102 78.4
HPP92_027773 Vanilla planifolia HOM05D004029 ORTHO05D004613 1.2e-37 163.3 99 82.8
Gohir.D11G296250 Gossypium hirsutum HOM05D004029 ORTHO05D004613 1.1e-33 150.2 81 81.5
SEGI_16455 Sequoiadendron giganteum HOM05D004029 ORTHO05D004613 6.4e-31 141.0 78 79.5
Haze_01245 Corylus avellana HOM05D007775 ORTHO05D009858 1.4e-30 139.8 124 59.7
Lsat_1_v5_gn_8_16381 Lactuca sativa HOM05D004029 ORTHO05D004613 1.7e-28 132.9 87 72.4
Medtr4g126280 Medicago truncatula HOM05D004029 ORTHO05D004613 8.1e-26 124.0 65 86.2
Lsat_1_v5_gn_6_53560 Lactuca sativa HOM05D004029 ORTHO05D004613 1.4e-25 123.2 119 53.8
CBR_g48013 Chara braunii HOM05D004029 ORTHO05D004613 7.1e-22 110.9 119 45.4
Cfa025671 Carpinus fangiana HOM05D004029 ORTHO05D004613 7.8e-21 107.5 602 23.3
SEGI_17451 Sequoiadendron giganteum HOM05D004029 ORTHO05D004613 2.1e-18 99.4 62 74.2
Psat0ss25761g0120 Pisum sativum HOM05D000735 ORTHO05D004613 2.4e-17 95.9 66 63.6
HPP92_020358 Vanilla planifolia HOM05D004029 ORTHO05D004613 5.3e-17 94.7 52 76.9
MD16G1231300 Malus domestica HOM05D004029 ORTHO05D004613 1.5e-16 93.2 57 75.4
Lsat_1_v5_gn_8_148540 Lactuca sativa HOM05D004029 ORTHO05D004613 9.9e-16 90.5 82 61.0
Cre01.g003500 Chlamydomonas reinhardtii HOM05D004029 ORTHO05D004613 3.5e-13 82.0 387 22.2
Lsat_1_v5_gn_4_161921 Lactuca sativa HOM05D004029 ORTHO05D004613 1.3e-12 80.1 99 47.5
CSS0007909 Camellia sinensis var. sinensis HOM05D001136 ORTHO05D004613 5.1e-12 78.2 58 63.8
Pp3c3_4110 Physcomitrium patens HOM05D004029 ORTHO05D004613 2.5e-11 75.9 75 50.7
MBI16_g04070_MAGBIO Magnolia biondii HOM05D005084 ORTHO05D006254 2.6e-08 65.9 52 63.5
ATR0693G070 Amborella trichopoda HOM05D004029 ORTHO05D004613 6.4e-07 61.2 46 58.7


User provided reference genes

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