Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g03957 Nelumbo nucifera HOM05D004279 ORTHO05D004979 5.1e-165 584.3 293 100.0
Nn1g06689 Nelumbo nucifera HOM05D004279 ORTHO05D004979 6.9e-146 520.8 285 92.3
TAR626G0357 Trochodendron aralioides HOM05D004279 ORTHO05D004979 5.8e-145 517.7 294 88.1
Aqoxy4G01310 Aquilegia oxysepala HOM05D004279 ORTHO05D004979 3.0e-141 505.4 296 86.1
PSO210G3340 Papaver somniferum HOM05D004279 ORTHO05D004979 3.1e-138 495.4 292 84.6
PSO832G3402 Papaver somniferum HOM05D004279 ORTHO05D004979 1.2e-137 493.4 292 84.2
Dinv22371 Davidia involucrata HOM05D004279 ORTHO05D004979 5.9e-137 491.1 294 85.0
Lj1A851T62 Lonicera japonica HOM05D004279 ORTHO05D004979 7.2e-135 484.2 294 83.0
CSS0001500 Camellia sinensis var. sinensis HOM05D004279 ORTHO05D004979 3.0e-133 478.8 294 81.3
TAR624G0257 Trochodendron aralioides HOM05D004279 ORTHO05D004979 1.1e-132 476.9 278 88.1
Dinv08329 Davidia involucrata HOM05D004279 ORTHO05D004979 2.5e-132 475.7 277 85.9
Rhsim04G0018800 Rhododendron simsii HOM05D004279 ORTHO05D004979 6.5e-128 461.1 295 80.7
Hma1.2p1_1274F.1_g271930 Hydrangea macrophylla HOM05D004279 ORTHO05D004979 1.2e-126 456.8 289 79.6
DCAR_009977 Daucus carota HOM05D004279 ORTHO05D004979 2.7e-126 455.7 294 79.9
Lsat_1_v5_gn_5_7280 Lactuca sativa HOM05D004279 ORTHO05D004979 1.0e-125 453.8 295 78.3
CSS0025917 Camellia sinensis var. sinensis HOM05D004279 ORTHO05D004979 2.3e-125 452.6 289 78.9
HanXRQChr05g0156561 Helianthus annuus HOM05D004279 ORTHO05D004979 3.0e-125 452.2 295 78.6
Actinidia35269 Actinidia chinensis HOM05D004279 ORTHO05D004979 7.4e-124 447.6 295 76.6
Hma1.2p1_1143F.1_g261130 Hydrangea macrophylla HOM05D004279 ORTHO05D004979 7.4e-124 447.6 291 77.3
Peaxi162Scf01111g00012 Petunia axillaris HOM05D004279 ORTHO05D004979 1.1e-122 443.7 291 77.3
Cc05_g12550 Coffea canephora HOM05D004279 ORTHO05D004979 7.0e-122 441.0 296 75.0
Nitab4.5_0000815g0050 Nicotiana tabacum HOM05D004279 ORTHO05D004979 7.0e-122 441.0 291 77.0
ECA236G3281 Erigeron canadensis HOM05D004279 ORTHO05D004979 2.0e-121 439.5 289 76.1
Nitab4.5_0009177g0010 Nicotiana tabacum HOM05D004279 ORTHO05D004979 5.0e-120 434.9 291 76.3
TWI39G0076 Tripterygium wilfordii HOM05D004279 ORTHO05D004979 1.4e-119 433.3 284 76.1
Actinidia18754 Actinidia chinensis HOM05D002936 ORTHO05D004979 2.5e-119 432.6 289 76.5
TWI38G1973 Tripterygium wilfordii HOM05D004279 ORTHO05D004979 3.2e-119 432.2 285 75.1
HanXRQChr13g0386401 Helianthus annuus HOM05D004279 ORTHO05D004979 4.2e-119 431.8 288 75.0
PGSC0003DMG400019253 Solanum tuberosum HOM05D004279 ORTHO05D004979 7.2e-119 431.0 291 73.9
Solyc07g063460.3 Solanum lycopersicum HOM05D004279 ORTHO05D004979 1.6e-118 429.9 291 73.9
Sopen07g031640 Solanum pennellii HOM05D004279 ORTHO05D004979 1.6e-118 429.9 291 73.9
DCAR_022481 Daucus carota HOM05D004279 ORTHO05D004979 1.0e-117 427.2 295 74.2
Cpa.g.sc80.101 Carica papaya HOM05D004279 ORTHO05D004979 2.3e-117 426.0 292 73.6
Migut.H01911 Erythranthe guttata HOM05D004279 ORTHO05D004979 3.9e-117 425.2 296 73.0
CANSAT11G2237 Cannabis sativa HOM05D004279 ORTHO05D004979 5.2e-117 424.9 295 72.2
QL08p019074 Quercus lobata HOM05D004279 ORTHO05D004979 5.2e-117 424.9 296 73.6
Gohir.D01G054400 Gossypium hirsutum HOM05D004279 ORTHO05D004979 6.7e-117 424.5 292 73.3
Gorai.002G074300 Gossypium raimondii HOM05D004279 ORTHO05D004979 6.7e-117 424.5 292 73.3
CSS0045555 Camellia sinensis var. sinensis HOM05D004279 ORTHO05D004979 2.6e-116 422.5 289 75.4
Manes.15G084500 Manihot esculenta HOM05D004279 ORTHO05D004979 7.4e-116 421.0 298 72.1
Gohir.A01G067200 Gossypium hirsutum HOM05D004279 ORTHO05D004979 9.7e-116 420.6 292 72.9
Potri.001G405200 Populus trichocarpa HOM05D004279 ORTHO05D004979 9.7e-116 420.6 290 73.1
Manes.03G114800 Manihot esculenta HOM05D004279 ORTHO05D004979 1.3e-115 420.2 298 72.1
ClCG11G018340 Citrullus lanatus HOM05D004279 ORTHO05D004979 6.3e-115 417.9 286 72.7
MSTRG.12925 Avicennia marina HOM05D004279 ORTHO05D004979 8.2e-115 417.5 298 72.1
CSS0022309 Camellia sinensis var. sinensis HOM05D004279 ORTHO05D004979 8.2e-115 417.5 294 73.5
AL8G29740 Arabidopsis lyrata HOM05D004279 ORTHO05D004979 1.4e-114 416.8 285 74.7
AT5G54400 Arabidopsis thaliana HOM05D004279 ORTHO05D004979 1.4e-114 416.8 285 74.4
PGR031G2155 Punica granatum HOM05D004279 ORTHO05D004979 1.4e-114 416.8 293 72.7
Ciclev10009067m.g Citrus clementina HOM05D004279 ORTHO05D004979 1.8e-114 416.4 285 74.0
CsaV3_3G044480 Cucumis sativus L. HOM05D004279 ORTHO05D004979 1.8e-114 416.4 290 71.7
Eucgr.F01088 Eucalyptus grandis HOM05D004279 ORTHO05D004979 1.8e-114 416.4 291 72.5
Gohir.D05G360400 Gossypium hirsutum HOM05D004279 ORTHO05D004979 1.8e-114 416.4 292 71.2
Gorai.009G432300 Gossypium raimondii HOM05D004279 ORTHO05D004979 1.8e-114 416.4 292 71.2
CARHR267680 Cardamine hirsuta HOM05D004279 ORTHO05D004979 3.1e-114 415.6 292 72.9
MBI02_g29384_MAGBIO Magnolia biondii HOM05D004279 ORTHO05D004979 3.1e-114 415.6 292 73.3
Potri.011G128300 Populus trichocarpa HOM05D004279 ORTHO05D004979 3.1e-114 415.6 291 71.1
Thecc.07G074500 Theobroma cacao HOM05D004279 ORTHO05D004979 4.1e-114 415.2 292 72.3
Cfa020528 Carpinus fangiana HOM05D004279 ORTHO05D004979 7.0e-114 414.5 296 72.3
MELO3C018223.2 Cucumis melo HOM05D004279 ORTHO05D004979 7.0e-114 414.5 285 72.6
Sabra16G0266200 Salix brachista HOM05D004279 ORTHO05D004979 9.1e-114 414.1 290 71.7
COL.COLO4_09461 Corchorus olitorius HOM05D004279 ORTHO05D004979 1.2e-113 413.7 292 71.9
MSTRG.14375 Avicennia marina HOM05D004279 ORTHO05D004979 1.6e-113 413.3 298 72.1
Gohir.A04G027700 Gossypium hirsutum HOM05D004279 ORTHO05D004979 1.6e-113 413.3 292 70.5
Haze_09505 Corylus avellana HOM05D004279 ORTHO05D004979 2.0e-113 412.9 296 72.3
CiPaw.12G122100 Carya illinoinensis HOM05D004279 ORTHO05D004979 2.6e-113 412.5 294 71.4
Duzib213G0014 Durio zibethinus HOM05D004279 ORTHO05D004979 3.5e-113 412.1 292 71.6
Lj3g0025503 Lotus japonicus HOM05D004279 ORTHO05D004979 3.5e-113 412.1 285 73.3
Duzib268G0928 Durio zibethinus HOM05D004279 ORTHO05D004979 5.9e-113 411.4 292 72.3
Sed0000911 Sechium edule HOM05D004279 ORTHO05D004979 5.9e-113 411.4 290 70.3
Prupe.4G187700 Prunus persica HOM05D004279 ORTHO05D004979 1.7e-112 409.8 289 71.3
Glyma.12G220600 Glycine max HOM05D004279 ORTHO05D004979 2.2e-112 409.5 293 71.3
Oeu055672.1 Olea europaea HOM05D004279 ORTHO05D004979 2.2e-112 409.5 297 70.7
CiPaw.11G174600 Carya illinoinensis HOM05D004279 ORTHO05D004979 3.8e-112 408.7 290 71.0
A02p10310 Brassica napus HOM05D004279 ORTHO05D004979 6.5e-112 407.9 293 71.0
BraA02t06098Z Brassica rapa HOM05D004279 ORTHO05D004979 8.5e-112 407.5 293 71.0
BolC2t07801H Brassica oleracea HOM05D004279 ORTHO05D004979 1.1e-111 407.1 293 70.6
Carub.0008s1473 Capsella rubella HOM05D004279 ORTHO05D004979 1.1e-111 407.1 292 71.9
FAN16G2997 Fragaria x ananassa HOM05D004279 ORTHO05D004979 1.1e-111 407.1 291 70.8
RcHm_v2.0_Chr5g0034991 Rosa chinensis HOM05D004279 ORTHO05D004979 1.5e-111 406.8 291 70.4
Sp6g16410 Schrenkiella parvula HOM05D004279 ORTHO05D004979 1.5e-111 406.8 292 71.2
FAN11G1457 Fragaria x ananassa HOM05D004279 ORTHO05D004979 1.9e-111 406.4 291 70.8
MD03G1221800 Malus domestica HOM05D004279 ORTHO05D004979 2.5e-111 406.0 297 69.0
SalBow7G1458 Salvia bowleyana HOM05D004279 ORTHO05D004979 2.5e-111 406.0 290 70.7
FvH4_3g20760 Fragaria vesca HOM05D004279 ORTHO05D004979 4.2e-111 405.2 291 70.4
THA.LOC104810491 Tarenaya hassleriana HOM05D004279 ORTHO05D004979 4.2e-111 405.2 292 72.3
FAN21G3274 Fragaria x ananassa HOM05D004279 ORTHO05D004979 5.5e-111 404.8 291 70.4
TPR.G38955 Trifolium pratense HOM05D004279 ORTHO05D004979 9.4e-111 404.1 293 70.6
Sed0021920 Sechium edule HOM05D004279 ORTHO05D004979 1.2e-110 403.7 286 71.0
Eucgr.F03342 Eucalyptus grandis HOM05D004279 ORTHO05D004979 1.6e-110 403.3 285 69.5
C02p17040 Brassica napus HOM05D004279 ORTHO05D004979 2.1e-110 402.9 293 70.0
CARHR090590 Cardamine hirsuta HOM05D004279 ORTHO05D004979 2.1e-110 402.9 292 70.9
Aa31LG3G10340 Aethionema arabicum HOM05D004279 ORTHO05D004979 2.7e-110 402.5 294 70.7
Ca_01814_v3 Cicer arietinum L. HOM05D004279 ORTHO05D004979 2.7e-110 402.5 293 70.6
Ca_30536_v3 Cicer arietinum L. HOM05D004279 ORTHO05D004979 2.7e-110 402.5 293 70.6
MD11G1239200 Malus domestica HOM05D004279 ORTHO05D004979 4.7e-110 401.7 289 69.6
FAN25G2565 Fragaria x ananassa HOM05D004279 ORTHO05D004979 6.1e-110 401.4 291 70.1
Phvul.005G085300 Phaseolus vulgaris HOM05D004279 ORTHO05D004979 6.1e-110 401.4 293 71.0
Psat4g016400 Pisum sativum HOM05D004279 ORTHO05D004979 6.1e-110 401.4 293 70.3
VMungo1080G0833 Vigna mungo HOM05D004279 ORTHO05D004979 6.1e-110 401.4 293 71.0
Sc16g0006820 Simmondsia chinensis HOM05D004279 ORTHO05D004979 1.0e-109 400.6 300 70.0
Aa31LG8G2770 Aethionema arabicum HOM05D004279 ORTHO05D004979 1.4e-109 400.2 292 70.5
BcaC09g48518 Brassica carinata HOM05D004279 ORTHO05D004979 1.4e-109 400.2 292 69.9
BcaB06g29588 Brassica carinata HOM05D004279 ORTHO05D004979 1.8e-109 399.8 293 68.9
BcaB05g22132 Brassica carinata HOM05D004279 ORTHO05D004979 2.3e-109 399.4 293 70.0
BolC1t04855H Brassica oleracea HOM05D004279 ORTHO05D004979 3.0e-109 399.1 292 69.9
Medtr2g080130 Medicago truncatula HOM05D004279 ORTHO05D004979 3.0e-109 399.1 293 71.0
Oeu008023.1 Olea europaea HOM05D004279 ORTHO05D004979 4.0e-109 398.7 297 67.7
BcaB04g20920 Brassica carinata HOM05D004279 ORTHO05D004979 6.7e-109 397.9 292 69.5
BcaC05g28964 Brassica carinata HOM05D004279 ORTHO05D004979 8.8e-109 397.5 292 68.8
C05p51590 Brassica napus HOM05D004279 ORTHO05D004979 8.8e-109 397.5 292 68.8
BolC5t33846H Brassica oleracea HOM05D004279 ORTHO05D004979 8.8e-109 397.5 292 68.8
Sp3g13790 Schrenkiella parvula HOM05D004279 ORTHO05D004979 8.8e-109 397.5 292 69.2
A05p33880 Brassica napus HOM05D004279 ORTHO05D004979 1.5e-108 396.7 291 69.4
Thhalv10021257m.g Eutrema salsugineum HOM05D004279 ORTHO05D004979 2.0e-108 396.4 291 69.8
AT3G15530 Arabidopsis thaliana HOM05D004279 ORTHO05D004979 4.4e-108 395.2 291 69.4
Carub.0003s1526 Capsella rubella HOM05D004279 ORTHO05D004979 4.4e-108 395.2 291 69.4
BraA05t22210Z Brassica rapa HOM05D004279 ORTHO05D004979 5.7e-108 394.8 291 69.4
AL3G28110 Arabidopsis lyrata HOM05D004279 ORTHO05D004979 7.5e-108 394.4 291 69.4
unitig_0.g2258 Utricularia gibba HOM05D004279 ORTHO05D004979 7.5e-108 394.4 294 65.3
SGA_v2.0_scaffold9G04950 Striga asiatica HOM05D004279 ORTHO05D004979 3.7e-107 392.1 298 68.5
BcaC03g14314 Brassica carinata HOM05D004279 ORTHO05D004979 8.3e-107 391.0 281 70.1
BraA01t03905Z Brassica rapa HOM05D004279 ORTHO05D004979 1.4e-106 390.2 285 71.2
Lsat_1_v5_gn_7_105700 Lactuca sativa HOM05D004279 ORTHO05D004979 5.3e-106 388.3 296 69.6
A01p38550 Brassica napus HOM05D004279 ORTHO05D004979 1.2e-105 387.1 285 70.5
THA.LOC104799915 Tarenaya hassleriana HOM05D004279 ORTHO05D004979 2.0e-105 386.3 285 71.2
C01p48920 Brassica napus HOM05D004279 ORTHO05D004979 4.5e-105 385.2 285 69.8
Lalb_Chr25g0286631 Lupinus albus HOM05D004279 ORTHO05D004979 7.7e-105 384.4 287 71.1
Lalb_Chr01g0016991 Lupinus albus HOM05D004279 ORTHO05D004979 6.5e-104 381.3 286 69.9
SHI28037 Sapria himalayana HOM05D004279 ORTHO05D004979 1.2e-102 377.1 285 65.3
THA.LOC104818054 Tarenaya hassleriana HOM05D004279 ORTHO05D004979 3.6e-102 375.6 284 67.6
Ah.06g183670 Amaranthus hybridus HOM05D004279 ORTHO05D004979 8.8e-101 370.9 307 64.2
AUR62015623 Chenopodium quinoa HOM05D004279 ORTHO05D004979 1.3e-99 367.1 306 64.1
AUR62029338 Chenopodium quinoa HOM05D004279 ORTHO05D004979 1.4e-98 363.6 306 63.7
SGA_v2.0_scaffold73G24305 Striga asiatica HOM05D004279 ORTHO05D004979 1.4e-98 363.6 293 63.8
HPP92_016704 Vanilla planifolia HOM05D004279 ORTHO05D004979 1.8e-98 363.2 295 65.8
Glyma.06G249400 Glycine max HOM05D004279 ORTHO05D004979 1.2e-97 360.5 295 64.1
Phvul.011G148200 Phaseolus vulgaris HOM05D004279 ORTHO05D004979 1.2e-97 360.5 294 64.6
ECA246G0789 Erigeron canadensis HOM05D004279 ORTHO05D004979 1.3e-96 357.1 244 74.2
Glyma.12G148500 Glycine max HOM05D004279 ORTHO05D004979 8.6e-96 354.4 294 62.6
EL10Ac4g08091 Beta vulgaris HOM05D004279 ORTHO05D004979 9.5e-95 350.9 310 60.3
VMungo1127G1925 Vigna mungo HOM05D004279 ORTHO05D004979 2.3e-93 346.3 294 61.6
SHI18877 Sapria himalayana HOM05D004279 ORTHO05D004979 9.2e-90 334.3 262 64.5
Glyma.13G280900 Glycine max HOM05D004279 ORTHO05D004979 2.3e-88 329.7 293 61.8
GSVIVG01014410001 Vitis vinifera HOM05D004279 ORTHO05D004979 1.5e-84 317.0 193 83.4
SHI27994 Sapria himalayana HOM05D004279 ORTHO05D004979 8.6e-80 301.2 278 56.8
Thhalv10014468m.g Eutrema salsugineum HOM05D004279 ORTHO05D004979 2.9e-75 286.2 215 71.2
SHI27902 Sapria himalayana HOM05D004279 ORTHO05D004979 1.1e-71 274.2 281 52.3
SHI27891 Sapria himalayana HOM05D004279 ORTHO05D004979 2.8e-70 269.6 281 51.2
ATR0693G409 Amborella trichopoda HOM05D004279 ORTHO05D004979 2.3e-69 266.5 277 54.2
Mapoly0019s0089 Marchantia polymorpha HOM05D004279 ORTHO05D004979 4.6e-65 252.3 284 48.2
SHI28023 Sapria himalayana HOM05D004279 ORTHO05D004979 2.6e-60 236.5 267 50.9
HanXRQChr08g0235651 Helianthus annuus HOM05D004279 ORTHO05D004979 1.9e-58 230.3 165 70.3
Atru.chr2.2812 Acer truncatum HOM05D004279 ORTHO05D004979 7.3e-55 218.4 139 77.0
CAN.G162.92 Capsicum annuum HOM05D004279 ORTHO05D004979 4.9e-51 205.7 144 74.3
HanXRQChr08g0235661 Helianthus annuus HOM05D004279 ORTHO05D004979 6.0e-49 198.7 126 75.4
VMungo1127G2040 Vigna mungo HOM05D004279 ORTHO05D004979 2.1e-46 190.3 152 63.8
CBR_g24389 Chara braunii HOM05D004279 ORTHO05D004979 5.0e-27 125.9 332 28.9
Atru.chr2.2813 Acer truncatum HOM05D004279 ORTHO05D004979 8.4e-27 125.2 99 65.7
Haze_01531 Corylus avellana HOM05D004279 ORTHO05D004979 7.1e-26 122.1 114 57.0
QL06p019554 Quercus lobata HOM05D004279 ORTHO05D004979 2.3e-24 117.1 85 71.8
Haze_12044 Corylus avellana HOM05D004279 ORTHO05D004979 6.7e-24 115.5 109 56.9
Haze_10444 Corylus avellana HOM05D004279 ORTHO05D004979 9.0e-21 105.1 98 58.2
SHI28022 Sapria himalayana HOM05D004279 ORTHO05D004979 3.0e-16 90.1 72 59.7
Haze_13283 Corylus avellana HOM05D004279 ORTHO05D004979 1.7e-11 74.3 90 50.0
Haze_06332 Corylus avellana HOM05D004279 ORTHO05D004979 5.5e-10 69.3 72 51.4
CDE02G4569 Ceratophyllum demersum HOM05D005748 ORTHO05D007123 7.4e-07 58.9 130 33.8
SHI26932 Sapria himalayana HOM05D009124 ORTHO05D012381 7.4e-07 58.9 70 44.3
Ca_04590_v3 Cicer arietinum L. HOM05D005748 ORTHO05D007123 9.7e-07 58.5 181 29.8
PSO478G3396 Papaver somniferum HOM05D005748 ORTHO05D007123 1.7e-06 57.8 120 39.2
DCAR_021512 Daucus carota HOM05D005748 ORTHO05D007123 6.3e-06 55.8 130 34.6


User provided reference genes

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