Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g03946 Nelumbo nucifera HOM05D004792 ORTHO05D005789 1.6e-67 259.6 163 100.0
Nn025s41563 Nelumbo nucifera HOM05D004792 ORTHO05D005789 1.4e-47 193.4 163 78.5
Nn1g06696 Nelumbo nucifera HOM05D004792 ORTHO05D005789 9.1e-39 164.1 163 63.8
TAR624G0278 Trochodendron aralioides HOM05D004792 ORTHO05D005789 1.2e-33 147.1 165 62.4
Dinv39793 Davidia involucrata HOM05D004792 ORTHO05D005789 9.8e-33 144.1 162 66.0
Actinidia05593 Actinidia chinensis HOM05D004792 ORTHO05D005789 9.1e-31 137.5 147 66.0
vmacro22273 Vaccinium macrocarpon HOM05D004792 ORTHO05D005789 2.9e-29 132.5 169 61.5
Gohir.A05G163900 Gossypium hirsutum HOM05D004792 ORTHO05D005789 8.6e-29 131.0 161 54.7
Oeu005073.1 Olea europaea HOM05D004792 ORTHO05D005789 5.5e-28 128.3 163 61.3
TWI63G0005 Tripterygium wilfordii HOM05D004792 ORTHO05D005789 5.5e-28 128.3 157 53.5
CiPaw.10G120700 Carya illinoinensis HOM05D004792 ORTHO05D005789 4.0e-26 122.1 166 53.0
TAR626G0583 Trochodendron aralioides HOM05D004792 ORTHO05D005789 4.0e-26 122.1 163 52.8
QL05p038407 Quercus lobata HOM05D004792 ORTHO05D005789 2.0e-25 119.8 169 58.0
arahy.Tifrunner.gnm1.ann1.1RAI3Q Arachis hypogaea HOM05D004792 ORTHO05D005789 4.4e-25 118.6 163 57.7
Hma1.2p1_0144F.1_g065030 Hydrangea macrophylla HOM05D004792 ORTHO05D005789 4.4e-25 118.6 163 55.2
Actinidia01923 Actinidia chinensis HOM05D001100 ORTHO05D001503 5.7e-25 118.2 148 61.5
Aqoxy1G02657 Aquilegia oxysepala HOM05D004792 ORTHO05D005789 1.3e-24 117.1 62 80.6
Sabra11G0031300 Salix brachista HOM05D004792 ORTHO05D005789 2.8e-24 115.9 164 48.8
Cpa.g.sc27.101 Carica papaya HOM05D004792 ORTHO05D005789 6.3e-24 114.8 163 52.8
Gohir.D05G166800 Gossypium hirsutum HOM05D004792 ORTHO05D005789 8.3e-24 114.4 159 54.1
PGR042G0729 Punica granatum HOM05D004792 ORTHO05D005789 1.1e-23 114.0 161 52.2
TPR.G36753 Trifolium pratense HOM05D004792 ORTHO05D005789 1.1e-23 114.0 165 62.4
TWI38G1637 Tripterygium wilfordii HOM05D004792 ORTHO05D005789 1.1e-23 114.0 157 51.6
arahy.Tifrunner.gnm1.ann1.NPL2R3 Arachis hypogaea HOM05D004792 ORTHO05D005789 1.4e-23 113.6 163 54.0
Gorai.009G171900 Gossypium raimondii HOM05D004792 ORTHO05D005789 2.4e-23 112.8 159 52.8
CiPaw.09G160100 Carya illinoinensis HOM05D004792 ORTHO05D005789 9.2e-23 110.9 163 52.8
CANSAT56G3746 Cannabis sativa HOM05D004792 ORTHO05D005789 1.2e-22 110.5 158 55.7
RcHm_v2.0_Chr5g0006831 Rosa chinensis HOM05D004792 ORTHO05D005789 2.7e-22 109.4 160 56.9
Medtr2g012520 Medicago truncatula HOM05D004792 ORTHO05D005789 5.9e-22 108.2 165 58.8
MBI02_g29949_MAGBIO Magnolia biondii HOM05D004792 ORTHO05D005789 1.0e-21 107.5 123 50.4
Phvul.006G190300 Phaseolus vulgaris HOM05D004792 ORTHO05D005789 1.3e-21 107.1 104 73.1
Cc02_g12670 Coffea canephora HOM05D004792 ORTHO05D005789 1.7e-21 106.7 159 42.8
Duzib235G1303 Durio zibethinus HOM05D004792 ORTHO05D005789 1.7e-21 106.7 161 59.0
GSVIVG01034659001 Vitis vinifera HOM05D004792 ORTHO05D005789 1.7e-21 106.7 63 73.0
Potri.004G036500 Populus trichocarpa HOM05D004792 ORTHO05D005789 2.3e-21 106.3 157 51.0
TPR.G32413 Trifolium pratense HOM05D004792 ORTHO05D005789 2.9e-21 105.9 109 64.2
ATR0693G452 Amborella trichopoda HOM05D004792 ORTHO05D005789 3.9e-21 105.5 103 68.0
Ca_00276_v3 Cicer arietinum L. HOM05D004792 ORTHO05D005789 3.9e-21 105.5 104 71.2
Glyma.13G244800 Glycine max HOM05D004792 ORTHO05D005789 3.9e-21 105.5 160 56.2
TAR627G0338 Trochodendron aralioides HOM05D004792 ORTHO05D005789 3.9e-21 105.5 158 48.1
Oeu026010.1 Olea europaea HOM05D004792 ORTHO05D005789 8.6e-21 104.4 163 57.7
Sopen02g023670 Solanum pennellii HOM05D004792 ORTHO05D005789 1.1e-20 104.0 163 48.5
MD10G1301000 Malus domestica HOM05D004792 ORTHO05D005789 1.5e-20 103.6 159 54.7
Solyc02g078850.1 Solanum lycopersicum HOM05D004792 ORTHO05D005789 1.9e-20 103.2 163 49.1
Atru.chr10.1978 Acer truncatum HOM05D004792 ORTHO05D005789 4.3e-20 102.1 106 50.0
Lj1P1211T35 Lonicera japonica HOM05D004792 ORTHO05D005789 4.3e-20 102.1 163 56.4
Sc05g0007980 Simmondsia chinensis HOM05D004792 ORTHO05D005789 5.6e-20 101.7 104 53.8
Glyma.15G068900 Glycine max HOM05D004792 ORTHO05D005789 7.3e-20 101.3 163 52.8
Medtr4g090520 Medicago truncatula HOM05D004792 ORTHO05D005789 7.3e-20 101.3 111 60.4
THA.LOC104812802 Tarenaya hassleriana HOM05D004792 ORTHO05D005789 2.1e-19 99.8 115 59.1
Carub.0002s0390 Capsella rubella HOM05D004792 ORTHO05D005789 2.8e-19 99.4 108 61.1
CDE05G1692 Ceratophyllum demersum HOM05D004792 ORTHO05D000003 2.8e-19 99.4 63 66.7
COL.COLO4_31550 Corchorus olitorius HOM05D004792 ORTHO05D005789 6.1e-19 98.2 63 66.7
PSO541G1127 Papaver somniferum HOM05D004792 ORTHO05D005789 6.1e-19 98.2 90 62.2
PSO675G5172 Papaver somniferum HOM05D004792 ORTHO05D005789 6.1e-19 98.2 90 62.2
Potri.011G045000 Populus trichocarpa HOM05D004792 ORTHO05D005789 6.1e-19 98.2 165 50.3
Sed0027560 Sechium edule HOM05D004792 ORTHO05D005789 1.0e-18 97.4 111 64.9
A09p16820 Brassica napus HOM05D004792 ORTHO05D005789 1.8e-18 96.7 169 46.7
BraA09t37319Z Brassica rapa HOM05D004792 ORTHO05D005789 1.8e-18 96.7 169 46.7
MELO3C007319.2 Cucumis melo HOM05D004792 ORTHO05D005789 1.8e-18 96.7 110 60.9
Lj6g0023604 Lotus japonicus HOM05D004792 ORTHO05D005789 1.8e-18 96.7 164 52.4
BcaC04g22318 Brassica carinata HOM05D004792 ORTHO05D005789 2.3e-18 96.3 163 49.1
C09p20730 Brassica napus HOM05D004792 ORTHO05D005789 2.3e-18 96.3 163 49.1
BolC9t54970H Brassica oleracea HOM05D004792 ORTHO05D005789 2.3e-18 96.3 163 49.1
Cfa000375 Carpinus fangiana HOM05D004792 ORTHO05D005789 3.1e-18 95.9 163 48.5
ECA236G3117 Erigeron canadensis HOM05D004792 ORTHO05D005789 3.1e-18 95.9 166 48.2
HanXRQChr04g0125741 Helianthus annuus HOM05D004792 ORTHO05D005789 3.1e-18 95.9 163 46.0
EL10Ac8g20634 Beta vulgaris HOM05D004792 ORTHO05D005789 5.2e-18 95.1 116 54.3
MD05G1323200 Malus domestica HOM05D004792 ORTHO05D005789 6.8e-18 94.7 160 53.8
TWI38G1643 Tripterygium wilfordii HOM05D004792 ORTHO05D005789 6.8e-18 94.7 157 49.7
CsaV3_6G049770 Cucumis sativus L. HOM05D004792 ORTHO05D005789 8.9e-18 94.4 110 66.4
Lsat_1_v5_gn_7_19840 Lactuca sativa HOM05D004792 ORTHO05D005789 8.9e-18 94.4 166 47.6
Sabra04G0022200 Salix brachista HOM05D004792 ORTHO05D005789 8.9e-18 94.4 157 51.0
Nitab4.5_0006694g0040 Nicotiana tabacum HOM05D004792 ORTHO05D005789 1.2e-17 94.0 158 51.3
VMungo0540G0301 Vigna mungo HOM05D004792 ORTHO05D005789 1.2e-17 94.0 112 64.3
Ciclev10017067m.g Citrus clementina HOM05D004792 ORTHO05D005789 1.5e-17 93.6 157 50.3
Nitab4.5_0003223g0020 Nicotiana tabacum HOM05D004792 ORTHO05D005789 1.5e-17 93.6 97 55.7
SGA_v2.0_scaffold100G29666 Striga asiatica HOM05D004792 ORTHO05D005789 2.6e-17 92.8 162 40.1
Psat1g207640 Pisum sativum HOM05D004792 ORTHO05D005789 3.4e-17 92.4 164 57.3
Prupe.4G039400 Prunus persica HOM05D004792 ORTHO05D005789 3.4e-17 92.4 171 55.6
THA.LOC104819068 Tarenaya hassleriana HOM05D004792 ORTHO05D005789 3.4e-17 92.4 108 63.0
PGSC0003DMG400022371 Solanum tuberosum HOM05D004792 ORTHO05D005789 4.4e-17 92.0 164 43.9
BcaB07g31269 Brassica carinata HOM05D004792 ORTHO05D005789 5.8e-17 91.7 169 47.3
BraA03t14358Z Brassica rapa HOM05D004792 ORTHO05D005789 9.8e-17 90.9 63 61.9
Ah.09g235930 Amaranthus hybridus HOM05D004792 ORTHO05D005789 1.7e-16 90.1 118 48.3
ClCG01G022580 Citrullus lanatus HOM05D004792 ORTHO05D005789 2.2e-16 89.7 110 53.6
BcaC06g30668 Brassica carinata HOM05D004792 ORTHO05D005789 2.9e-16 89.4 63 58.7
BcaNung00848 Brassica carinata HOM05D004792 ORTHO05D005789 2.9e-16 89.4 63 58.7
A03p52820 Brassica napus HOM05D004792 ORTHO05D005789 2.9e-16 89.4 63 58.7
C07p51260 Brassica napus HOM05D004792 ORTHO05D005789 2.9e-16 89.4 63 58.7
BolC7t45626H Brassica oleracea HOM05D004792 ORTHO05D005789 2.9e-16 89.4 63 58.7
Manes.16G022700 Manihot esculenta HOM05D004792 ORTHO05D005789 2.9e-16 89.4 166 53.0
AL7G32380 Arabidopsis lyrata HOM05D004792 ORTHO05D005789 3.7e-16 89.0 111 62.2
Aa31LG2G9370 Aethionema arabicum HOM05D004792 ORTHO05D005789 4.9e-16 88.6 163 49.1
Hma1.2p1_1363F.1_g278365 Hydrangea macrophylla HOM05D004792 ORTHO05D005789 4.9e-16 88.6 96 68.8
Nitab4.5_0006260g0010 Nicotiana tabacum HOM05D004792 ORTHO05D005789 6.4e-16 88.2 97 54.6
Carub.0007s1976 Capsella rubella HOM05D004792 ORTHO05D005789 8.3e-16 87.8 63 57.1
Thhalv10026556m.g Eutrema salsugineum HOM05D004792 ORTHO05D005789 8.3e-16 87.8 60 60.0
Zm00001eb217390 Zea mays HOM05D004792 ORTHO05D005789 1.1e-15 87.4 63 57.1
Gohir.D06G128800 Gossypium hirsutum HOM05D004792 ORTHO05D005789 1.4e-15 87.0 111 51.4
Gorai.010G150300 Gossypium raimondii HOM05D004792 ORTHO05D005789 1.4e-15 87.0 111 51.4
Peaxi162Scf00031g00071 Petunia axillaris HOM05D004792 ORTHO05D005789 1.4e-15 87.0 108 49.1
SalBow8G4104 Salvia bowleyana HOM05D004792 ORTHO05D005789 1.4e-15 87.0 101 56.4
HPP92_018770 Vanilla planifolia HOM05D004792 ORTHO05D005789 1.4e-15 87.0 109 65.1
AT4G21620 Arabidopsis thaliana HOM05D004792 ORTHO05D005789 1.9e-15 86.7 111 63.1
Migut.M01156 Erythranthe guttata HOM05D004792 ORTHO05D005789 2.4e-15 86.3 162 50.0
BcaB03g11686 Brassica carinata HOM05D004792 ORTHO05D005789 4.1e-15 85.5 63 57.1
CAN.G132.12 Capsicum annuum HOM05D004792 ORTHO05D005789 5.4e-15 85.1 63 58.7
Nitab4.5_0003114g0080 Nicotiana tabacum HOM05D004792 ORTHO05D005789 5.4e-15 85.1 163 48.5
Thecc.06G195800 Theobroma cacao HOM05D004792 ORTHO05D005789 5.4e-15 85.1 158 48.7
Gohir.A06G123900 Gossypium hirsutum HOM05D004792 ORTHO05D005789 7.0e-15 84.7 162 43.2
CARHR228340 Cardamine hirsuta HOM05D004792 ORTHO05D005789 9.2e-15 84.3 111 55.0
Os12g0634700 Oryza sativa ssp. japonica HOM05D004792 ORTHO05D005789 9.2e-15 84.3 63 57.1
Rhsim13G0175100 Rhododendron simsii HOM05D004792 ORTHO05D005789 9.2e-15 84.3 147 51.0
Os03g0676300 Oryza sativa ssp. japonica HOM05D004792 ORTHO05D005789 1.6e-14 83.6 163 49.1
FAN25G3432 Fragaria x ananassa HOM05D004792 ORTHO05D005789 2.7e-14 82.8 160 50.0
Zm00001eb032860 Zea mays HOM05D004792 ORTHO05D005789 3.5e-14 82.4 63 58.7
Haze_06550 Corylus avellana HOM05D004792 ORTHO05D005789 1.0e-13 80.9 164 45.1
unitig_26.g9746 Utricularia gibba HOM05D004792 ORTHO05D005789 1.3e-13 80.5 155 38.1
CDE05G2245 Ceratophyllum demersum HOM05D004792 ORTHO05D005789 1.7e-13 80.1 86 48.8
Aa31LG6G3620 Aethionema arabicum HOM05D004792 ORTHO05D005789 2.3e-13 79.7 98 59.2
CARHR051350 Cardamine hirsuta HOM05D004792 ORTHO05D005789 2.3e-13 79.7 58 60.3
CARHR051360 Cardamine hirsuta HOM05D004792 ORTHO05D005789 3.0e-13 79.3 107 46.7
CDE05G0177 Ceratophyllum demersum HOM05D000873 ORTHO05D002948 3.0e-13 79.3 63 54.0
DCAR_008063 Daucus carota HOM05D004792 ORTHO05D005789 3.9e-13 79.0 58 56.9
FvH4_3g04450 Fragaria vesca HOM05D004792 ORTHO05D005789 6.6e-13 78.2 60 60.0
FAN11G1697 Fragaria x ananassa HOM05D004792 ORTHO05D005789 6.6e-13 78.2 60 60.0
FAN21G2112 Fragaria x ananassa HOM05D004792 ORTHO05D005789 6.6e-13 78.2 60 60.0
BcaC01g00688 Brassica carinata HOM05D004792 ORTHO05D005789 1.5e-12 77.0 107 53.3
A08p15060 Brassica napus HOM05D004792 ORTHO05D005789 1.5e-12 77.0 107 53.3
C03p83150 Brassica napus HOM05D004792 ORTHO05D005789 1.5e-12 77.0 107 53.3
BolC3t20598H Brassica oleracea HOM05D004792 ORTHO05D005789 1.5e-12 77.0 107 53.3
BraA08t33487Z Brassica rapa HOM05D004792 ORTHO05D005789 1.5e-12 77.0 107 53.3
Solyc10g009190.1 Solanum lycopersicum HOM05D004792 ORTHO05D005789 1.5e-12 77.0 63 54.0
Sopen10g004980 Solanum pennellii HOM05D004792 ORTHO05D005789 1.5e-12 77.0 63 54.0
CAN.G1705.1 Capsicum annuum HOM05D004792 ORTHO05D005789 3.3e-12 75.9 157 46.5
Dinv40512 Davidia involucrata HOM05D004792 ORTHO05D005789 7.3e-12 74.7 82 72.0
Sed0018891 Sechium edule HOM05D004792 ORTHO05D005789 1.6e-11 73.6 104 53.8
FAN16G0443 Fragaria x ananassa HOM05D004792 ORTHO05D005789 2.1e-11 73.2 62 58.1
CDE11G0417 Ceratophyllum demersum HOM05D004792 ORTHO05D005789 1.8e-10 70.1 57 52.6
SEGI_10462 Sequoiadendron giganteum HOM05D004792 ORTHO05D005789 3.1e-10 69.3 108 39.8
Oeu026227.1 Olea europaea HOM05D004792 ORTHO05D005789 5.2e-10 68.6 105 49.5
PGSC0003DMG400010821 Solanum tuberosum HOM05D004792 ORTHO05D005789 6.8e-10 68.2 101 55.4
AL2G15070 Arabidopsis lyrata HOM05D004792 ORTHO05D005789 7.5e-09 64.7 166 34.3
AT1G61255 Arabidopsis thaliana HOM05D004792 ORTHO05D005789 9.8e-09 64.3 166 34.9
Sp3g32430 Schrenkiella parvula HOM05D010802 ORTHO05D012953 9.8e-09 64.3 60 43.3
Aa31LG8G16070 Aethionema arabicum HOM05D010802 ORTHO05D012953 6.4e-08 61.6 54 51.9
Thhalv10022963m.g Eutrema salsugineum HOM05D010802 ORTHO05D012953 6.4e-08 61.6 59 40.7
Zm00001eb092170 Zea mays HOM05D004792 ORTHO05D005789 1.9e-07 60.1 111 35.1
Zm00001eb299240 Zea mays HOM05D004792 ORTHO05D005789 2.4e-07 59.7 63 38.1
unitig_749.g13788 Utricularia gibba HOM05D000041 ORTHO05D008933 5.4e-07 58.5 79 53.2
A09p12160 Brassica napus HOM05D010802 ORTHO05D012953 9.2e-07 57.8 57 43.9
C09p14380 Brassica napus HOM05D010802 ORTHO05D012953 9.2e-07 57.8 57 43.9
BraA09t36860Z Brassica rapa HOM05D010802 ORTHO05D012953 9.2e-07 57.8 57 43.9
BcaC04g22871 Brassica carinata HOM05D010802 ORTHO05D012953 2.7e-06 56.2 57 42.1
BolC9t54342H Brassica oleracea HOM05D010802 ORTHO05D012953 2.7e-06 56.2 57 42.1
Carub.0003s3326 Capsella rubella HOM05D010802 ORTHO05D012953 3.5e-06 55.8 62 35.5


User provided reference genes

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