Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g03860 Nelumbo nucifera HOM05D007836 ORTHO05D009876 1.0e-38 162.9 84 100.0
Nn1g03862 Nelumbo nucifera HOM05D007836 ORTHO05D009876 1.0e-38 162.9 84 100.0
Sabra04G0019100 Salix brachista HOM05D007836 ORTHO05D009876 1.7e-20 102.4 88 65.9
CiPaw.10G117600 Carya illinoinensis HOM05D007836 ORTHO05D009876 3.7e-20 101.3 87 65.5
Ciclev10017323m.g Citrus clementina HOM05D007836 ORTHO05D009876 1.4e-19 99.4 89 64.0
COL.COLO4_31599 Corchorus olitorius HOM05D007836 ORTHO05D009876 2.4e-19 98.6 87 63.2
TAR629G2038 Trochodendron aralioides HOM05D007836 ORTHO05D009876 1.2e-18 96.3 91 63.7
QL05p081073 Quercus lobata HOM05D007836 ORTHO05D009876 1.6e-18 95.9 82 63.4
Thecc.06G201100 Theobroma cacao HOM05D007836 ORTHO05D009876 2.7e-18 95.1 91 60.4
TPR.G36842 Trifolium pratense HOM05D007836 ORTHO05D009876 4.6e-18 94.4 88 60.2
Potri.004G033300 Populus trichocarpa HOM05D007836 ORTHO05D009876 6.0e-18 94.0 88 62.5
MBI18_g27690_MAGBIO Magnolia biondii HOM05D007836 ORTHO05D009876 1.0e-17 93.2 90 64.4
Psat1g208960 Pisum sativum HOM05D007836 ORTHO05D009876 1.7e-17 92.4 90 58.9
Ca_00250_v3 Cicer arietinum L. HOM05D007836 ORTHO05D009876 3.0e-17 91.7 88 59.1
Ca_29769_v3 Cicer arietinum L. HOM05D007836 ORTHO05D009876 3.0e-17 91.7 88 59.1
Ca_29839_v3 Cicer arietinum L. HOM05D007836 ORTHO05D009876 3.0e-17 91.7 88 59.1
Medtr2g011690 Medicago truncatula HOM05D007836 ORTHO05D009876 3.9e-17 91.3 90 57.8
TWI38G1692 Tripterygium wilfordii HOM05D007836 ORTHO05D009876 5.1e-17 90.9 84 63.1
Migut.M01222 Erythranthe guttata HOM05D007836 ORTHO05D009876 6.6e-17 90.5 82 62.2
QL08p037020 Quercus lobata HOM05D007836 ORTHO05D009876 2.5e-16 88.6 91 60.4
Cfa000343 Carpinus fangiana HOM05D007836 ORTHO05D009876 7.3e-16 87.0 87 59.8
Glyma.13G247000 Glycine max HOM05D007836 ORTHO05D009876 1.6e-15 85.9 87 62.1
Gohir.A10G021700 Gossypium hirsutum HOM05D007836 ORTHO05D009876 1.6e-15 85.9 90 53.3
Prupe.4G035300 Prunus persica HOM05D007836 ORTHO05D009876 1.6e-15 85.9 85 56.5
Gorai.011G023600 Gossypium raimondii HOM05D007836 ORTHO05D009876 2.8e-15 85.1 92 52.2
Hma1.2p1_1182F.1_g264760 Hydrangea macrophylla HOM05D007836 ORTHO05D009876 3.6e-15 84.7 83 61.4
Haze_06588 Corylus avellana HOM05D007836 ORTHO05D009876 1.4e-14 82.8 73 61.6
Potri.011G041700 Populus trichocarpa HOM05D007836 ORTHO05D009876 1.4e-14 82.8 85 57.6
TAR627G0603 Trochodendron aralioides HOM05D007836 ORTHO05D009876 3.1e-14 81.6 85 58.8
Gohir.D10G022500 Gossypium hirsutum HOM05D007836 ORTHO05D009876 4.0e-14 81.3 97 49.5
FAN11G3258 Fragaria x ananassa HOM05D007836 ORTHO05D009876 5.2e-14 80.9 97 55.7
Manes.16G019800 Manihot esculenta HOM05D007836 ORTHO05D009876 1.2e-13 79.7 85 55.3
Cfa014529 Carpinus fangiana HOM05D007836 ORTHO05D009876 2.6e-13 78.6 98 53.1
Sabra19G0118200 Salix brachista HOM05D007836 ORTHO05D009876 3.4e-13 78.2 92 50.0
Potri.019G117800 Populus trichocarpa HOM05D007836 ORTHO05D009876 4.4e-13 77.8 92 48.9
Nitab4.5_0000649g0060 Nicotiana tabacum HOM05D007836 ORTHO05D009876 9.9e-13 76.6 85 56.5
Eucgr.L02510 Eucalyptus grandis HOM05D007836 ORTHO05D009876 1.3e-12 76.3 83 56.6
COL.COLO4_13657 Corchorus olitorius HOM05D007836 ORTHO05D009876 1.7e-12 75.9 88 54.5
FvH4_3g03810 Fragaria vesca HOM05D007836 ORTHO05D009876 1.7e-12 75.9 98 53.1
Lalb_Chr20g0122321 Lupinus albus HOM05D007836 ORTHO05D009876 1.7e-12 75.9 85 54.1
Rhsim02G0119100 Rhododendron simsii HOM05D007836 ORTHO05D009876 1.7e-12 75.9 83 59.0
CiPaw.03G168400 Carya illinoinensis HOM05D007836 ORTHO05D009876 3.8e-12 74.7 96 50.0
FAN16G2096 Fragaria x ananassa HOM05D007836 ORTHO05D009876 6.4e-12 73.9 98 52.0
Manes.13G152300 Manihot esculenta HOM05D007836 ORTHO05D009876 6.4e-12 73.9 86 51.2
Nitab4.5_0005389g0040 Nicotiana tabacum HOM05D007836 ORTHO05D009876 6.4e-12 73.9 84 56.0
Sabra11G0028600 Salix brachista HOM05D007836 ORTHO05D009876 1.1e-11 73.2 75 58.7
Aqoxy1G03904 Aquilegia oxysepala HOM05D007836 ORTHO05D009876 1.4e-11 72.8 88 47.7
Migut.H01523 Erythranthe guttata HOM05D007836 ORTHO05D009876 1.4e-11 72.8 91 48.4
Atru.chr6.3083 Acer truncatum HOM05D007836 ORTHO05D009876 7.1e-11 70.5 102 47.1
Eucgr.L02509 Eucalyptus grandis HOM05D007836 ORTHO05D009876 9.2e-11 70.1 83 56.6
Potri.013G148300 Populus trichocarpa HOM05D007836 ORTHO05D009876 2.1e-10 68.9 88 51.1
Thecc.02G170500 Theobroma cacao HOM05D007836 ORTHO05D009876 2.7e-10 68.6 84 50.0
Ciclev10018116m.g Citrus clementina HOM05D007836 ORTHO05D009876 4.6e-10 67.8 71 54.9
QL05p081076 Quercus lobata HOM05D007836 ORTHO05D009876 4.6e-10 67.8 71 56.3
PGR004G0674 Punica granatum HOM05D007836 ORTHO05D009876 1.7e-09 65.9 78 47.4
ClCG01G022480 Citrullus lanatus HOM05D007836 ORTHO05D009876 2.3e-09 65.5 80 50.0
FAN21G2853 Fragaria x ananassa HOM05D007836 ORTHO05D009876 8.7e-09 63.5 73 53.4
Gohir.A06G209201 Gossypium hirsutum HOM05D007836 ORTHO05D009876 8.7e-09 63.5 70 55.7
Sed0016301 Sechium edule HOM05D007836 ORTHO05D009876 1.5e-08 62.8 64 54.7
ATR0693G322 Amborella trichopoda HOM05D017888 ORTHO05D009876 2.5e-08 62.0 74 47.3
Manes.12G082200 Manihot esculenta HOM05D007836 ORTHO05D009876 2.5e-08 62.0 69 56.5
CAN.G424.25 Capsicum annuum HOM05D007836 ORTHO05D009876 3.3e-08 61.6 77 46.8
MBI02_g37331_MAGBIO Magnolia biondii HOM05D000831 ORTHO05D000660 3.3e-08 61.6 88 47.7
Phvul.006G192700 Phaseolus vulgaris HOM05D007836 ORTHO05D009876 3.3e-08 61.6 70 52.9
MBI02_g37334_MAGBIO Magnolia biondii HOM05D000831 ORTHO05D000660 4.3e-08 61.2 87 48.3
MBI02_g44823_MAGBIO Magnolia biondii HOM05D000831 ORTHO05D000660 4.3e-08 61.2 87 48.3
MBI02_g37328_MAGBIO Magnolia biondii HOM05D000831 ORTHO05D000660 9.6e-08 60.1 87 48.3
Gohir.A04G106066 Gossypium hirsutum HOM05D007836 ORTHO05D009876 1.2e-07 59.7 86 50.0
MBI02_g37329_MAGBIO Magnolia biondii HOM05D000831 ORTHO05D000660 2.8e-07 58.5 76 48.7
MBI02_g37332_MAGBIO Magnolia biondii HOM05D000831 ORTHO05D000660 3.6e-07 58.2 76 48.7
Cc05_g06160 Coffea canephora HOM05D000831 ORTHO05D000660 4.7e-07 57.8 73 46.6
Glyma.12G200700 Glycine max HOM05D000831 ORTHO05D000660 4.7e-07 57.8 72 50.0
Atru.chr10.2022 Acer truncatum HOM05D007836 ORTHO05D009876 6.2e-07 57.4 71 54.9
Gohir.D06G127700 Gossypium hirsutum HOM05D007836 ORTHO05D009876 6.2e-07 57.4 67 53.7
Gorai.010G149400 Gossypium raimondii HOM05D007836 ORTHO05D009876 6.2e-07 57.4 67 53.7
Solyc02g079240.1 Solanum lycopersicum HOM05D007836 ORTHO05D009876 6.2e-07 57.4 74 47.3
Thecc.02G170800 Theobroma cacao HOM05D000831 ORTHO05D000660 6.2e-07 57.4 84 42.9
Psat5g268680 Pisum sativum HOM05D000831 ORTHO05D000660 1.4e-06 56.2 88 43.2
CiPaw.03G168600 Carya illinoinensis HOM05D000831 ORTHO05D000660 1.8e-06 55.8 84 38.1
ATR0693G408 Amborella trichopoda HOM05D007836 ORTHO05D009876 2.4e-06 55.5 48 58.3
AL6G44110 Arabidopsis lyrata HOM05D000831 ORTHO05D000660 2.4e-06 55.5 75 44.0
CANSAT11G1378 Cannabis sativa HOM05D000831 ORTHO05D000660 2.4e-06 55.5 71 46.5
COL.COLO4_13653 Corchorus olitorius HOM05D000831 ORTHO05D000660 2.4e-06 55.5 78 44.9
MBI02_g37327_MAGBIO Magnolia biondii HOM05D000831 ORTHO05D000660 2.4e-06 55.5 87 46.0
MBI02_g37330_MAGBIO Magnolia biondii HOM05D000831 ORTHO05D000660 2.4e-06 55.5 76 47.4
TPR.G18070 Trifolium pratense HOM05D000831 ORTHO05D000660 2.4e-06 55.5 88 43.2
BcaC01g01784 Brassica carinata HOM05D000831 ORTHO05D000660 3.1e-06 55.1 73 42.5
C03p71900 Brassica napus HOM05D000831 ORTHO05D000660 3.1e-06 55.1 73 42.5
CARHR256510 Cardamine hirsuta HOM05D000831 ORTHO05D000660 3.1e-06 55.1 56 53.6
TPR.G18048 Trifolium pratense HOM05D000831 ORTHO05D000660 3.1e-06 55.1 76 44.7
BcaC08g43861 Brassica carinata HOM05D000831 ORTHO05D000660 4.0e-06 54.7 56 51.8
CARHR256440 Cardamine hirsuta HOM05D000831 ORTHO05D000660 4.0e-06 54.7 55 56.4
Ciclev10017345m.g Citrus clementina HOM05D000831 ORTHO05D000660 4.0e-06 54.7 73 45.2
Thhalv10009208m.g Eutrema salsugineum HOM05D000831 ORTHO05D000660 4.0e-06 54.7 76 44.7
A09p32890 Brassica napus HOM05D000831 ORTHO05D000660 5.2e-06 54.3 85 38.8
Cc05_g06150 Coffea canephora HOM05D000831 ORTHO05D000660 5.2e-06 54.3 75 44.0
Gohir.A13G057150 Gossypium hirsutum HOM05D007836 ORTHO05D009876 5.2e-06 54.3 31 77.4
Gohir.D13G064750 Gossypium hirsutum HOM05D007836 ORTHO05D009876 5.2e-06 54.3 31 77.4
Gorai.013G073500 Gossypium raimondii HOM05D007836 ORTHO05D009876 5.2e-06 54.3 31 77.4
Medtr2g089930 Medicago truncatula HOM05D000831 ORTHO05D000660 5.2e-06 54.3 73 43.8
Medtr2g089945 Medicago truncatula HOM05D000831 ORTHO05D000660 5.2e-06 54.3 50 56.0
BraA09t38830Z Brassica rapa HOM05D000831 ORTHO05D000660 6.9e-06 53.9 56 50.0
CANSAT11G0733 Cannabis sativa HOM05D000831 ORTHO05D000660 6.9e-06 53.9 70 41.4
Carub.0001s3178 Capsella rubella HOM05D000831 ORTHO05D000660 6.9e-06 53.9 62 50.0
CiPaw.03G168500 Carya illinoinensis HOM05D000831 ORTHO05D000660 6.9e-06 53.9 84 38.1
Ca_01542_v3 Cicer arietinum L. HOM05D000831 ORTHO05D000660 6.9e-06 53.9 72 43.1
Prupe.3G229700 Prunus persica HOM05D000831 ORTHO05D000660 6.9e-06 53.9 81 39.5
THA.LOC104806479 Tarenaya hassleriana HOM05D000831 ORTHO05D000660 6.9e-06 53.9 74 43.2
GSVIVG01029998001 Vitis vinifera HOM05D000831 ORTHO05D000660 6.9e-06 53.9 74 44.6
Ah.06g183460 Amaranthus hybridus HOM05D000831 ORTHO05D000660 9.0e-06 53.5 76 47.4
AT4G10270 Arabidopsis thaliana HOM05D000831 ORTHO05D000660 9.0e-06 53.5 76 44.7
A06p19930 Brassica napus HOM05D000831 ORTHO05D000660 9.0e-06 53.5 73 41.1
BraA06t25076Z Brassica rapa HOM05D000831 ORTHO05D000660 9.0e-06 53.5 73 41.1
CANSAT11G0426 Cannabis sativa HOM05D000831 ORTHO05D000660 9.0e-06 53.5 71 43.7
FAN25G1236 Fragaria x ananassa HOM05D007380 ORTHO05D009269 9.0e-06 53.5 90 46.7
Gorai.010G254100 Gossypium raimondii HOM05D007836 ORTHO05D009876 9.0e-06 53.5 72 50.0
Sed0003998 Sechium edule HOM05D007836 ORTHO05D009876 9.0e-06 53.5 80 45.0


User provided reference genes

Program Settings