Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g03826 Nelumbo nucifera HOM05D008701 ORTHO05D005382 4.0e-171 604.7 324 100.0
TAR626G1447 Trochodendron aralioides HOM05D008701 ORTHO05D010238 7.9e-42 175.3 325 46.8
TAR011G0003 Trochodendron aralioides HOM05D008701 ORTHO05D010238 6.2e-39 165.6 323 46.1
TWI39G0991 Tripterygium wilfordii HOM05D013385 ORTHO05D005382 2.0e-21 107.5 316 33.9
Cfa014502 Carpinus fangiana HOM05D008701 ORTHO05D010238 5.5e-19 99.4 317 31.5
Sabra16G0271700 Salix brachista HOM05D006433 ORTHO05D005382 1.2e-18 98.2 316 36.7
Sabra16G0276700 Salix brachista HOM05D006433 ORTHO05D005382 1.2e-18 98.2 316 36.7
MBI02_g25137_MAGBIO Magnolia biondii HOM05D008701 ORTHO05D010238 1.6e-18 97.8 319 35.7
Prupe.3G227700 Prunus persica HOM05D008701 ORTHO05D010238 3.6e-18 96.7 314 32.8
Thecc.02G167700 Theobroma cacao HOM05D008701 ORTHO05D010238 1.4e-17 94.7 326 35.9
RcHm_v2.0_Chr2g0161211 Rosa chinensis HOM05D008701 ORTHO05D010238 3.0e-17 93.6 335 30.1
TAR624G0030 Trochodendron aralioides HOM05D008701 ORTHO05D010238 5.1e-17 92.8 128 46.1
TAR624G0398 Trochodendron aralioides HOM05D008701 ORTHO05D010238 5.1e-17 92.8 128 46.1
Dinv08359 Davidia involucrata HOM05D012187 ORTHO05D005382 8.8e-17 92.0 256 33.6
FAN05G0248 Fragaria x ananassa HOM05D008701 ORTHO05D010238 4.3e-16 89.7 330 27.9
COL.COLO4_06754 Corchorus olitorius HOM05D008701 ORTHO05D010238 5.7e-16 89.4 322 32.6
Dinv02575 Davidia involucrata HOM05D008701 ORTHO05D028399 5.7e-16 89.4 319 31.3
Haze_13046 Corylus avellana HOM05D008701 ORTHO05D010238 1.3e-15 88.2 316 30.1
Duzib052G1245 Durio zibethinus HOM05D008701 ORTHO05D010238 1.7e-15 87.8 328 33.2
FAN09G1417 Fragaria x ananassa HOM05D008701 ORTHO05D010238 1.7e-15 87.8 329 28.3
PSO541G2888 Papaver somniferum HOM05D008701 ORTHO05D010238 3.7e-15 86.7 324 34.9
FvH4_6g44330 Fragaria vesca HOM05D008701 ORTHO05D010238 4.8e-15 86.3 322 29.2
FAN02G3791 Fragaria x ananassa HOM05D008701 ORTHO05D010238 4.8e-15 86.3 329 28.9
FAN14G1396 Fragaria x ananassa HOM05D008701 ORTHO05D010238 4.8e-15 86.3 322 29.2
Actinidia05152 Actinidia chinensis HOM05D012187 ORTHO05D021147 6.3e-15 85.9 273 32.2
RhsimUnG0172600 Rhododendron simsii HOM05D012187 ORTHO05D021147 2.4e-14 84.0 326 29.4
TWI38G1693 Tripterygium wilfordii HOM05D013385 ORTHO05D005382 2.4e-14 84.0 298 31.2
Manes.03G117800 Manihot esculenta HOM05D006433 ORTHO05D020383 6.9e-14 82.4 310 29.0
Potri.001G408900 Populus trichocarpa HOM05D006433 ORTHO05D005382 1.2e-13 81.6 314 36.0
VMungo0251G3481 Vigna mungo HOM05D006433 ORTHO05D005382 2.6e-13 80.5 81 51.9
Glyma.09G282600 Glycine max HOM05D006433 ORTHO05D005382 5.9e-13 79.3 127 38.6
Gorai.005G206900 Gossypium raimondii HOM05D008701 ORTHO05D010238 7.7e-13 79.0 326 27.9
ATR0618G439 Amborella trichopoda HOM05D006433 ORTHO05D005382 1.0e-12 78.6 78 50.0
Potri.013G149300 Populus trichocarpa HOM05D008701 ORTHO05D010238 1.3e-12 78.2 330 28.8
Rhsim06G0192100 Rhododendron simsii HOM05D012187 ORTHO05D021147 2.2e-12 77.4 308 31.8
Haze_11768 Corylus avellana HOM05D006433 ORTHO05D005382 5.0e-12 76.3 76 50.0
TWI74G1071 Tripterygium wilfordii HOM05D006433 ORTHO05D005382 6.5e-12 75.9 80 50.0
COL.COLO4_03341 Corchorus olitorius HOM05D006433 ORTHO05D005382 1.4e-11 74.7 82 52.4
Gorai.005G210800 Gossypium raimondii HOM05D006433 ORTHO05D005382 1.4e-11 74.7 76 47.4
MD17G1087000 Malus domestica HOM05D008701 ORTHO05D010238 1.4e-11 74.7 321 33.0
Gohir.D02G188100 Gossypium hirsutum HOM05D006433 ORTHO05D005382 1.9e-11 74.3 76 47.4
Medtr1g037520 Medicago truncatula HOM05D006433 ORTHO05D005382 1.9e-11 74.3 76 48.7
QL08p017181 Quercus lobata HOM05D013385 ORTHO05D005382 1.9e-11 74.3 318 30.5
Gohir.A03G164900 Gossypium hirsutum HOM05D006433 ORTHO05D005382 2.5e-11 73.9 76 47.4
TWI77G0994 Tripterygium wilfordii HOM05D006433 ORTHO05D005382 2.5e-11 73.9 128 38.3
Thecc.02G159800 Theobroma cacao HOM05D006433 ORTHO05D005382 3.2e-11 73.6 76 46.1
MD09G1098800 Malus domestica HOM05D008701 ORTHO05D010238 4.2e-11 73.2 319 30.4
SEGI_06945 Sequoiadendron giganteum HOM05D020619 ORTHO05D005382 4.2e-11 73.2 137 37.2
TPR.G39976 Trifolium pratense HOM05D006433 ORTHO05D005382 5.5e-11 72.8 80 50.0
Duzib132G0593 Durio zibethinus HOM05D006433 ORTHO05D005382 7.2e-11 72.4 76 46.1
Nitab4.5_0000771g0160 Nicotiana tabacum HOM05D006433 ORTHO05D005382 7.2e-11 72.4 76 42.1
PGSC0003DMG400032563 Solanum tuberosum HOM05D006433 ORTHO05D005382 7.2e-11 72.4 126 32.5
Aqoxy5G03711 Aquilegia oxysepala HOM05D006433 ORTHO05D005382 9.4e-11 72.0 81 46.9
Nitab4.5_0005356g0050 Nicotiana tabacum HOM05D006433 ORTHO05D005382 9.4e-11 72.0 76 42.1
CANSAT11G0906 Cannabis sativa HOM05D012187 ORTHO05D005382 1.2e-10 71.6 286 28.7
Lj2g0006429 Lotus japonicus HOM05D006433 ORTHO05D005382 1.2e-10 71.6 130 37.7
Phvul.003G005000 Phaseolus vulgaris HOM05D006433 ORTHO05D005382 1.2e-10 71.6 102 42.2
Potri.019G119000 Populus trichocarpa HOM05D008701 ORTHO05D010238 1.2e-10 71.6 324 27.2
TWI36G1014 Tripterygium wilfordii HOM05D008701 ORTHO05D010238 1.2e-10 71.6 67 55.2
CiPaw.05G169900 Carya illinoinensis HOM05D006433 ORTHO05D005382 2.1e-10 70.9 77 46.8
Duzib213G0120 Durio zibethinus HOM05D013385 ORTHO05D005382 2.1e-10 70.9 86 45.3
Prupe.1G347600 Prunus persica HOM05D006433 ORTHO05D005382 2.1e-10 70.9 77 44.2
Cfa008752 Carpinus fangiana HOM05D006433 ORTHO05D005382 2.7e-10 70.5 77 48.1
Gohir.D02G184600 Gossypium hirsutum HOM05D008701 ORTHO05D010238 2.7e-10 70.5 326 24.5
Nitab4.5_0002132g0010 Nicotiana tabacum HOM05D006433 ORTHO05D005382 2.7e-10 70.5 138 32.6
QL08p036307 Quercus lobata HOM05D008701 ORTHO05D010238 4.7e-10 69.7 278 29.1
arahy.Tifrunner.gnm1.ann1.0GGX7L Arachis hypogaea HOM05D006433 ORTHO05D005382 6.1e-10 69.3 133 33.8
Duzib248G0841 Durio zibethinus HOM05D006433 ORTHO05D005382 6.1e-10 69.3 79 44.3
FAN07G1145 Fragaria x ananassa HOM05D006433 ORTHO05D005382 6.1e-10 69.3 83 45.8
MBI06_g16016_MAGBIO Magnolia biondii HOM05D006433 ORTHO05D005382 6.1e-10 69.3 138 34.8
RcHm_v2.0_Chr4g0446731 Rosa chinensis HOM05D006433 ORTHO05D005382 6.1e-10 69.3 79 46.8
Sopen04g004420 Solanum pennellii HOM05D006433 ORTHO05D005382 6.1e-10 69.3 80 41.2
Cc11_g02400 Coffea canephora HOM05D006433 ORTHO05D005382 7.9e-10 68.9 78 44.9
Solyc04g009305.1 Solanum lycopersicum HOM05D006433 ORTHO05D005382 7.9e-10 68.9 80 41.2
Actinidia13713 Actinidia chinensis HOM05D006433 ORTHO05D005382 1.0e-09 68.6 78 44.9
arahy.Tifrunner.gnm1.ann1.48DCIV Arachis hypogaea HOM05D056638 ORTHO05D005382 1.0e-09 68.6 123 38.2
Ciclev10031878m.g Citrus clementina HOM05D006433 ORTHO05D005382 1.0e-09 68.6 128 35.2
Glyma.20G002800 Glycine max HOM05D006433 ORTHO05D005382 1.0e-09 68.6 76 46.1
GSVIVG01000448001 Vitis vinifera HOM05D008701 ORTHO05D010238 1.0e-09 68.6 99 44.4
Duzib213G0682 Durio zibethinus HOM05D013385 ORTHO05D005382 1.4e-09 68.2 321 29.3
ECA246G5167 Erigeron canadensis HOM05D006433 ORTHO05D005382 1.8e-09 67.8 82 43.9
Lsat_1_v5_gn_3_35360 Lactuca sativa HOM05D006433 ORTHO05D005382 1.8e-09 67.8 82 39.0
Sabra07G0060600 Salix brachista HOM05D006433 ORTHO05D005382 1.8e-09 67.8 76 47.4
Actinidia09967 Actinidia chinensis HOM05D006433 ORTHO05D005382 2.3e-09 67.4 108 45.4
arahy.Tifrunner.gnm1.ann1.X1AWTF Arachis hypogaea HOM05D006433 ORTHO05D005382 2.3e-09 67.4 89 40.4
FvH4_4g36960 Fragaria vesca HOM05D006433 ORTHO05D005382 3.0e-09 67.0 83 41.0
FAN12G0758 Fragaria x ananassa HOM05D006433 ORTHO05D005382 3.0e-09 67.0 83 41.0
FAN17G1725 Fragaria x ananassa HOM05D006433 ORTHO05D005382 3.0e-09 67.0 82 45.1
MD13G1005200 Malus domestica HOM05D006433 ORTHO05D005382 3.0e-09 67.0 88 39.8
CiPaw.03G167300 Carya illinoinensis HOM05D008701 ORTHO05D010238 3.9e-09 66.6 240 30.8
Gorai.008G148300 Gossypium raimondii HOM05D006433 ORTHO05D005382 3.9e-09 66.6 82 45.1
TAR371G0604 Trochodendron aralioides HOM05D006433 ORTHO05D005382 3.9e-09 66.6 138 36.2
PGR142G2540 Punica granatum HOM05D006433 ORTHO05D005382 6.7e-09 65.9 75 44.0
Gohir.D12G137000 Gossypium hirsutum HOM05D006433 ORTHO05D005382 8.8e-09 65.5 81 45.7
CiPaw.06G061400 Carya illinoinensis HOM05D006433 ORTHO05D005382 1.5e-08 64.7 76 44.7
Potri.005G092400 Populus trichocarpa HOM05D006433 ORTHO05D005382 1.5e-08 64.7 77 45.5
Thecc.07G068900 Theobroma cacao HOM05D013385 ORTHO05D005382 1.5e-08 64.7 312 32.1
Thhalv10014452m.g Eutrema salsugineum HOM05D006433 ORTHO05D005382 2.0e-08 64.3 76 38.2
Psat6g135800 Pisum sativum HOM05D006433 ORTHO05D005382 2.0e-08 64.3 79 45.6
Potri.007G071900 Populus trichocarpa HOM05D006433 ORTHO05D005382 2.0e-08 64.3 75 48.0
Actinidia38416 Actinidia chinensis HOM05D006433 ORTHO05D005382 2.6e-08 63.9 92 38.0
CiPaw.11G178600 Carya illinoinensis HOM05D012187 ORTHO05D020383 2.6e-08 63.9 315 29.5
Gohir.A12G133500 Gossypium hirsutum HOM05D006433 ORTHO05D005382 2.6e-08 63.9 81 44.4
Lalb_Chr10g0094961 Lupinus albus HOM05D006433 ORTHO05D005382 2.6e-08 63.9 84 44.0
Duzib132G0833 Durio zibethinus HOM05D008701 ORTHO05D010238 4.4e-08 63.2 325 31.7
MBI03_g09362_MAGBIO Magnolia biondii HOM05D006433 ORTHO05D005382 4.4e-08 63.2 78 42.3
MD16G1002700 Malus domestica HOM05D006433 ORTHO05D005382 4.4e-08 63.2 88 39.8
Manes.03G007400 Manihot esculenta HOM05D006433 ORTHO05D005382 4.4e-08 63.2 76 44.7
DCAR_009707 Daucus carota HOM05D008701 ORTHO05D010238 5.7e-08 62.8 79 48.1
Rhsim06G0153900 Rhododendron simsii HOM05D038632 ORTHO05D028399 5.7e-08 62.8 132 35.6
SGA_v2.0_scaffold6G03215 Striga asiatica HOM05D006433 ORTHO05D005382 5.7e-08 62.8 79 35.4
TAR629G0072 Trochodendron aralioides HOM05D006433 ORTHO05D005382 5.7e-08 62.8 139 31.7
Glyma.06G300500 Glycine max HOM05D010583 ORTHO05D010238 7.4e-08 62.4 275 25.1
SEGI_22038 Sequoiadendron giganteum HOM05D020619 ORTHO05D005382 7.4e-08 62.4 125 35.2
Cpa.g.sc0.139 Carica papaya HOM05D006433 ORTHO05D005382 9.7e-08 62.0 81 43.2
QL03p044176 Quercus lobata HOM05D006433 ORTHO05D005382 9.7e-08 62.0 145 33.1
Sp6g34710 Schrenkiella parvula HOM05D006433 ORTHO05D005382 9.7e-08 62.0 76 38.2
Lj6A717T151 Lonicera japonica HOM05D006433 ORTHO05D005382 1.3e-07 61.6 78 35.9
Ciclev10018089m.g Citrus clementina HOM05D008701 ORTHO05D010238 1.7e-07 61.2 85 41.2
DCAR_026896 Daucus carota HOM05D006433 ORTHO05D005382 1.7e-07 61.2 77 41.6
Eucgr.G02576 Eucalyptus grandis HOM05D006433 ORTHO05D005382 1.7e-07 61.2 77 39.0
Manes.12G085400 Manihot esculenta HOM05D008701 ORTHO05D010238 1.7e-07 61.2 90 43.3
A10p28440 Brassica napus HOM05D006433 ORTHO05D005382 2.2e-07 60.8 76 38.2
C09p68700 Brassica napus HOM05D006433 ORTHO05D005382 2.2e-07 60.8 76 38.2
BolC9t59616H Brassica oleracea HOM05D006433 ORTHO05D005382 2.2e-07 60.8 76 38.2
BraA10t44892Z Brassica rapa HOM05D006433 ORTHO05D005382 2.2e-07 60.8 76 38.2
CARHR204930 Cardamine hirsuta HOM05D006433 ORTHO05D005382 2.2e-07 60.8 76 36.8
Manes.11G107400 Manihot esculenta HOM05D006433 ORTHO05D005382 2.2e-07 60.8 78 39.7
DCAR_025546 Daucus carota HOM05D006433 ORTHO05D005382 2.8e-07 60.5 120 34.2
AT5G08240 Arabidopsis thaliana HOM05D006433 ORTHO05D005382 3.7e-07 60.1 76 39.5
Thhalv10005318m.g Eutrema salsugineum HOM05D006433 ORTHO05D005382 3.7e-07 60.1 130 33.1
CARHR190370 Cardamine hirsuta HOM05D006433 ORTHO05D005382 4.8e-07 59.7 85 37.6
Gohir.A03G161300 Gossypium hirsutum HOM05D008701 ORTHO05D010238 6.3e-07 59.3 328 23.8
Migut.E00694 Erythranthe guttata HOM05D006433 ORTHO05D005382 8.2e-07 58.9 81 35.8
AUR62032989 Chenopodium quinoa HOM05D006433 ORTHO05D005382 1.1e-06 58.5 81 39.5
Carub.0006s2095 Capsella rubella HOM05D006433 ORTHO05D005382 1.4e-06 58.2 79 41.8
AUR62017700 Chenopodium quinoa HOM05D006433 ORTHO05D005382 1.4e-06 58.2 84 36.9
Sabra05G0076500 Salix brachista HOM05D006433 ORTHO05D005382 1.4e-06 58.2 74 40.5
AL6G34350 Arabidopsis lyrata HOM05D006433 ORTHO05D005382 1.8e-06 57.8 84 38.1
Haze_09551 Corylus avellana HOM05D023808 ORTHO05D020383 1.8e-06 57.8 272 29.8
Carub.0006s0712 Capsella rubella HOM05D006433 ORTHO05D005382 2.4e-06 57.4 121 34.7
Duzib268G1412 Durio zibethinus HOM05D013385 ORTHO05D005382 2.4e-06 57.4 89 42.7
AT5G23160 Arabidopsis thaliana HOM05D006433 ORTHO05D005382 3.1e-06 57.0 84 38.1
Aa31LG11G2650 Aethionema arabicum HOM05D006433 ORTHO05D005382 4.1e-06 56.6 76 35.5
AL6G18640 Arabidopsis lyrata HOM05D006433 ORTHO05D005382 5.3e-06 56.2 76 38.2
BcaB08g37272 Brassica carinata HOM05D006433 ORTHO05D005382 5.3e-06 56.2 62 41.9
CANSAT56G2818 Cannabis sativa HOM05D006433 ORTHO05D005382 5.3e-06 56.2 78 46.2
Gohir.D01G056900 Gossypium hirsutum HOM05D013385 ORTHO05D005382 7.0e-06 55.8 73 45.2
Cpa.g.sc12.19 Carica papaya HOM05D013385 ORTHO05D005382 9.1e-06 55.5 267 33.3
Dinv22350 Davidia involucrata HOM05D012187 ORTHO05D021147 9.1e-06 55.5 98 36.7


User provided reference genes

Program Settings