Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g03798 Nelumbo nucifera HOM05D000005 ORTHO05D280554 1.1e-47 193.0 94 100.0
Nn8g41080 Nelumbo nucifera HOM05D000005 ORTHO05D000012 5.5e-12 74.3 52 75.0
Nn1g09534 Nelumbo nucifera HOM05D000005 ORTHO05D000012 1.1e-07 60.1 52 61.5
RcHm_v2.0_Chr4g0387471 Rosa chinensis HOM05D000005 ORTHO05D000012 1.4e-07 59.7 87 42.5
PGSC0003DMG400013627 Solanum tuberosum HOM05D000005 ORTHO05D000012 1.8e-07 59.3 52 53.8
Lj2g0014678 Lotus japonicus HOM05D000005 ORTHO05D000012 2.4e-07 58.9 52 55.8
Nn3g20282 Nelumbo nucifera HOM05D000005 ORTHO05D000012 2.4e-07 58.9 52 57.7
Psat1g120400 Pisum sativum HOM05D000005 ORTHO05D012186 2.4e-07 58.9 51 58.8
QL01p010504 Quercus lobata HOM05D000005 ORTHO05D000012 2.4e-07 58.9 106 33.0
CAN.G566.9 Capsicum annuum HOM05D000005 ORTHO05D011639 4.1e-07 58.2 51 51.0
HanXRQChr15g0465971 Helianthus annuus HOM05D000005 ORTHO05D000012 4.1e-07 58.2 51 54.9
QL04p074837 Quercus lobata HOM05D000005 ORTHO05D000294 4.1e-07 58.2 51 56.9
QL04p074333 Quercus lobata HOM05D000005 ORTHO05D000012 5.3e-07 57.8 51 56.9
QL04p074877 Quercus lobata HOM05D000005 ORTHO05D000012 5.3e-07 57.8 51 56.9
CAN.G107.34 Capsicum annuum HOM05D000005 ORTHO05D011639 6.9e-07 57.4 51 52.9
Dinv17761 Davidia involucrata HOM05D000005 ORTHO05D000012 6.9e-07 57.4 52 59.6
Atru.chr10.815 Acer truncatum HOM05D000005 ORTHO05D000012 9.1e-07 57.0 51 56.9
FAN27G2806 Fragaria x ananassa HOM05D000005 ORTHO05D000012 9.1e-07 57.0 52 53.8
Nn8g40975 Nelumbo nucifera HOM05D000005 ORTHO05D000012 9.1e-07 57.0 66 50.0
Atru.chr10.819 Acer truncatum HOM05D000005 ORTHO05D000012 1.2e-06 56.6 51 54.9
Atru.chr5.3398 Acer truncatum HOM05D000005 ORTHO05D000294 1.2e-06 56.6 52 55.8
CAN.G566.10 Capsicum annuum HOM05D000005 ORTHO05D000294 1.2e-06 56.6 51 49.0
CAN.G566.8 Capsicum annuum HOM05D000005 ORTHO05D011639 1.2e-06 56.6 51 49.0
CAN.G809.22 Capsicum annuum HOM05D000005 ORTHO05D000012 1.2e-06 56.6 52 51.9
Potri.T126306 Populus trichocarpa HOM05D000009 ORTHO05D000008 1.2e-06 56.6 52 53.8
QL05p000396 Quercus lobata HOM05D000005 ORTHO05D000012 1.2e-06 56.6 104 35.6
QL05p028445 Quercus lobata HOM05D000005 ORTHO05D000294 1.2e-06 56.6 51 52.9
PGSC0003DMG400045101 Solanum tuberosum HOM05D000005 ORTHO05D000294 1.2e-06 56.6 51 49.0
Duzib268G1448 Durio zibethinus HOM05D000005 ORTHO05D000012 1.5e-06 56.2 51 54.9
QL01p010483 Quercus lobata HOM05D000005 ORTHO05D000012 1.5e-06 56.2 106 32.1
QL04p074316 Quercus lobata HOM05D000005 ORTHO05D000294 1.5e-06 56.2 50 56.0
QL05p019911 Quercus lobata HOM05D000005 ORTHO05D000294 1.5e-06 56.2 51 56.9
QL05p079585 Quercus lobata HOM05D000005 ORTHO05D000012 1.5e-06 56.2 51 56.9
Atru.chr10.830 Acer truncatum HOM05D000005 ORTHO05D000294 2.0e-06 55.8 51 54.9
CSS0011328 Camellia sinensis var. sinensis HOM05D000005 ORTHO05D000294 2.0e-06 55.8 51 56.9
CSS0014011 Camellia sinensis var. sinensis HOM05D000005 ORTHO05D000294 2.0e-06 55.8 51 56.9
CAN.G809.27 Capsicum annuum HOM05D000005 ORTHO05D000012 2.0e-06 55.8 52 50.0
COL.COLO4_36369 Corchorus olitorius HOM05D000005 ORTHO05D000012 2.0e-06 55.8 52 53.8
QL05p031759 Quercus lobata HOM05D000005 ORTHO05D000012 2.0e-06 55.8 51 52.9
RcHm_v2.0_Chr1g0319051 Rosa chinensis HOM05D000005 ORTHO05D000012 2.0e-06 55.8 87 44.8
Sc07g0002920 Simmondsia chinensis HOM05D000005 ORTHO05D000012 2.0e-06 55.8 69 44.9
PGSC0003DMG400024055 Solanum tuberosum HOM05D000005 ORTHO05D018852 2.0e-06 55.8 66 47.0
CAN.G107.21 Capsicum annuum HOM05D000005 ORTHO05D011639 2.6e-06 55.5 52 48.1
Duzib268G1112 Durio zibethinus HOM05D000005 ORTHO05D000012 2.6e-06 55.5 51 54.9
FvH4_5g38540 Fragaria vesca HOM05D000005 ORTHO05D012870 2.6e-06 55.5 52 55.8
Lalb_Chr22g0354031 Lupinus albus HOM05D000005 ORTHO05D000012 2.6e-06 55.5 66 47.0
PGR031G3491 Punica granatum HOM05D000005 ORTHO05D000012 2.6e-06 55.5 52 50.0
QL01p024208 Quercus lobata HOM05D000005 ORTHO05D000012 2.6e-06 55.5 51 52.9
QL02p086771 Quercus lobata HOM05D000005 ORTHO05D000012 2.6e-06 55.5 51 54.9
QL04p087870 Quercus lobata HOM05D000005 ORTHO05D000012 2.6e-06 55.5 51 52.9
QL09p002262 Quercus lobata HOM05D000005 ORTHO05D000012 2.6e-06 55.5 51 54.9
PGSC0003DMG400010527 Solanum tuberosum HOM05D000005 ORTHO05D000012 2.6e-06 55.5 52 53.8
PGSC0003DMG400020913 Solanum tuberosum HOM05D000005 ORTHO05D000294 2.6e-06 55.5 51 51.0
Atru.chr5.3401 Acer truncatum HOM05D000005 ORTHO05D000012 3.4e-06 55.1 51 56.9
CSS0019268 Camellia sinensis var. sinensis HOM05D000005 ORTHO05D000012 3.4e-06 55.1 51 56.9
Duzib268G1757 Durio zibethinus HOM05D000005 ORTHO05D000012 3.4e-06 55.1 51 54.9
Duzib268G1802 Durio zibethinus HOM05D000005 ORTHO05D000012 3.4e-06 55.1 51 52.9
FAN04G1101 Fragaria x ananassa HOM05D000005 ORTHO05D000012 3.4e-06 55.1 69 46.4
Nn8g40974 Nelumbo nucifera HOM05D000005 ORTHO05D000012 3.4e-06 55.1 51 54.9
Potri.011G015050 Populus trichocarpa HOM05D000005 ORTHO05D000294 3.4e-06 55.1 84 35.7
Potri.013G037599 Populus trichocarpa HOM05D000005 ORTHO05D000012 3.4e-06 55.1 52 53.8
QL07p005124 Quercus lobata HOM05D000005 ORTHO05D000012 3.4e-06 55.1 53 52.8
Solyc04g056570.3 Solanum lycopersicum HOM05D000005 ORTHO05D000012 3.4e-06 55.1 52 53.8
Nn1g08209 Nelumbo nucifera HOM05D000005 ORTHO05D000012 4.5e-06 54.7 52 57.7
Nn8g41086 Nelumbo nucifera HOM05D000005 ORTHO05D000294 4.5e-06 54.7 40 67.5
Potri.019G017082 Populus trichocarpa HOM05D000005 ORTHO05D000012 4.5e-06 54.7 51 52.9
QL05p015996 Quercus lobata HOM05D000005 ORTHO05D000012 4.5e-06 54.7 51 52.9
QL09p052702 Quercus lobata HOM05D000005 ORTHO05D000012 4.5e-06 54.7 103 35.9
Atru.chr11.83 Acer truncatum HOM05D000005 ORTHO05D000012 5.9e-06 54.3 52 53.8
arahy.Tifrunner.gnm1.ann1.F56ZG1 Arachis hypogaea HOM05D000005 ORTHO05D000012 5.9e-06 54.3 52 51.9
arahy.Tifrunner.gnm1.ann1.RYL35A Arachis hypogaea HOM05D000005 ORTHO05D000012 5.9e-06 54.3 52 51.9
CANSAT78G1585 Cannabis sativa HOM05D000005 ORTHO05D000012 5.9e-06 54.3 52 51.9
Eucgr.J00352 Eucalyptus grandis HOM05D000005 ORTHO05D000294 5.9e-06 54.3 67 46.3
QL05p082988 Quercus lobata HOM05D000005 ORTHO05D000012 5.9e-06 54.3 51 52.9
QL11p007191 Quercus lobata HOM05D000005 ORTHO05D000012 5.9e-06 54.3 51 56.9
QL11p010050 Quercus lobata HOM05D000005 ORTHO05D000012 5.9e-06 54.3 53 52.8
RcHm_v2.0_Chr4g0386831 Rosa chinensis HOM05D000005 ORTHO05D000012 5.9e-06 54.3 51 54.9
CSS0006587 Camellia sinensis var. sinensis HOM05D000005 ORTHO05D000294 7.7e-06 53.9 53 52.8
CSS0012393 Camellia sinensis var. sinensis HOM05D000005 ORTHO05D000294 7.7e-06 53.9 51 56.9
CAN.G107.12 Capsicum annuum HOM05D000005 ORTHO05D000294 7.7e-06 53.9 41 56.1
CiPaw.14G075500 Carya illinoinensis HOM05D000005 ORTHO05D000012 7.7e-06 53.9 52 55.8
Duzib212G0049 Durio zibethinus HOM05D000005 ORTHO05D000012 7.7e-06 53.9 52 55.8
HanXRQChr16g0521501 Helianthus annuus HOM05D000005 ORTHO05D000012 7.7e-06 53.9 51 51.0
HanXRQChr16g0521531 Helianthus annuus HOM05D000005 ORTHO05D000012 7.7e-06 53.9 51 52.9
MD02G1031900 Malus domestica HOM05D000005 ORTHO05D000294 7.7e-06 53.9 52 53.8
MD12G1125200 Malus domestica HOM05D000005 ORTHO05D000012 7.7e-06 53.9 66 43.9
Potri.012G135700 Populus trichocarpa HOM05D000005 ORTHO05D000012 7.7e-06 53.9 52 53.8
Potri.T002200 Populus trichocarpa HOM05D000005 ORTHO05D000012 7.7e-06 53.9 51 52.9
QL07p047299 Quercus lobata HOM05D000005 ORTHO05D000012 7.7e-06 53.9 51 52.9
QL09p000406 Quercus lobata HOM05D000005 ORTHO05D000012 7.7e-06 53.9 51 52.9
QL09p002978 Quercus lobata HOM05D000005 ORTHO05D000294 7.7e-06 53.9 106 31.1
QL11p053977 Quercus lobata HOM05D000005 ORTHO05D000012 7.7e-06 53.9 53 50.9
RcHm_v2.0_Chr4g0387161 Rosa chinensis HOM05D000005 ORTHO05D000294 7.7e-06 53.9 52 55.8
Solyc12g096900.2 Solanum lycopersicum HOM05D000248 ORTHO05D000294 7.7e-06 53.9 51 51.0
Sopen12g032720 Solanum pennellii HOM05D000248 ORTHO05D000294 7.7e-06 53.9 51 51.0
PGSC0003DMG400029415 Solanum tuberosum HOM05D000005 ORTHO05D000012 7.7e-06 53.9 51 49.0


User provided reference genes

Program Settings