Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g03613 Nelumbo nucifera HOM05D004673 ORTHO05D005596 1.3e-90 336.7 213 100.0
Nn1g04563 Nelumbo nucifera HOM05D004673 ORTHO05D005596 3.3e-20 102.8 114 53.5
Nn1g07051 Nelumbo nucifera HOM05D004673 ORTHO05D005596 2.8e-19 99.8 97 59.8
Ciclev10018053m.g Citrus clementina HOM05D004673 ORTHO05D005596 3.1e-18 96.3 152 38.8
Atru.chr1.2923 Acer truncatum HOM05D004673 ORTHO05D005596 1.5e-17 94.0 131 42.0
QL01p003771 Quercus lobata HOM05D004673 ORTHO05D005596 2.6e-17 93.2 183 37.7
Haze_22936 Corylus avellana HOM05D004673 ORTHO05D005596 5.8e-17 92.0 166 38.6
TAR623G1034 Trochodendron aralioides HOM05D004673 ORTHO05D005596 8.3e-16 88.2 162 38.3
Dinv13478 Davidia involucrata HOM05D004673 ORTHO05D005596 1.9e-15 87.0 173 35.8
Prupe.7G003900 Prunus persica HOM05D004673 ORTHO05D005596 2.4e-15 86.7 113 45.1
Sabra01G0002200 Salix brachista HOM05D004673 ORTHO05D005596 2.4e-15 86.7 162 45.7
Cc01_g00160 Coffea canephora HOM05D004673 ORTHO05D005596 4.1e-15 85.9 127 42.5
THA.LOC104821143 Tarenaya hassleriana HOM05D004673 ORTHO05D005596 4.1e-15 85.9 144 46.5
Aqoxy1G00488 Aquilegia oxysepala HOM05D004673 ORTHO05D005596 5.4e-15 85.5 160 35.6
Cfa009556 Carpinus fangiana HOM05D004673 ORTHO05D005596 5.4e-15 85.5 169 37.3
THA.LOC104816064 Tarenaya hassleriana HOM05D004673 ORTHO05D005596 7.0e-15 85.1 119 43.7
C09p23810 Brassica napus HOM05D004673 ORTHO05D005596 1.2e-14 84.3 153 35.3
BcaC04g22073 Brassica carinata HOM05D000897 ORTHO05D000716 2.0e-14 83.6 153 35.3
Ciclev10024612m.g Citrus clementina HOM05D004673 ORTHO05D005596 2.0e-14 83.6 126 42.1
CAN.G1834.13 Capsicum annuum HOM05D004673 ORTHO05D005596 2.7e-14 83.2 175 35.4
QL01p004573 Quercus lobata HOM05D004673 ORTHO05D005596 3.5e-14 82.8 133 39.1
CANSAT11G1431 Cannabis sativa HOM05D004673 ORTHO05D005596 7.8e-14 81.6 120 42.5
CARHR253250 Cardamine hirsuta HOM05D004673 ORTHO05D005596 1.7e-13 80.5 153 47.7
Peaxi162Scf00705g00063 Petunia axillaris HOM05D004673 ORTHO05D005596 1.7e-13 80.5 176 34.1
Rhsim13G0233200 Rhododendron simsii HOM05D004673 ORTHO05D005596 2.3e-13 80.1 125 42.4
GSVIVG01025485001 Vitis vinifera HOM05D004673 ORTHO05D005596 2.3e-13 80.1 131 44.3
DCAR_030118 Daucus carota HOM05D004673 ORTHO05D005596 3.0e-13 79.7 163 35.6
Thecc.05G294400 Theobroma cacao HOM05D004673 ORTHO05D005596 3.0e-13 79.7 110 45.5
QL01p003522 Quercus lobata HOM05D000182 ORTHO05D005596 3.9e-13 79.3 153 36.6
EL10Ac3g06819 Beta vulgaris HOM05D004673 ORTHO05D005596 5.0e-13 79.0 182 34.1
MBI11_g38090_MAGBIO Magnolia biondii HOM05D004673 ORTHO05D005596 6.6e-13 78.6 126 42.9
DCAR_030116 Daucus carota HOM05D004673 ORTHO05D005596 8.6e-13 78.2 173 36.4
Dinv09263 Davidia involucrata HOM05D004673 ORTHO05D005596 1.9e-12 77.0 118 39.0
Nitab4.5_0006195g0010 Nicotiana tabacum HOM05D004673 ORTHO05D005596 1.9e-12 77.0 176 34.7
DCAR_030109 Daucus carota HOM05D004673 ORTHO05D005596 3.3e-12 76.3 173 36.4
Nitab4.5_0000551g0010 Nicotiana tabacum HOM05D004673 ORTHO05D005596 3.3e-12 76.3 183 34.4
Potri.001G003200 Populus trichocarpa HOM05D004673 ORTHO05D005596 3.3e-12 76.3 160 41.9
COL.COLO4_13600 Corchorus olitorius HOM05D004673 ORTHO05D005596 4.3e-12 75.9 121 42.1
Gohir.A11G259500 Gossypium hirsutum HOM05D004673 ORTHO05D005596 4.3e-12 75.9 154 34.4
Lsat_1_v5_gn_1_25861 Lactuca sativa HOM05D004673 ORTHO05D005596 4.3e-12 75.9 170 32.9
A09p18980 Brassica napus HOM05D004673 ORTHO05D005596 5.6e-12 75.5 143 34.3
BraA09t37516Z Brassica rapa HOM05D004673 ORTHO05D005596 5.6e-12 75.5 143 34.3
Cpa.g.c34637 Carica papaya HOM05D004673 ORTHO05D005596 5.6e-12 75.5 117 39.3
GSVIVG01025482001 Vitis vinifera HOM05D004673 ORTHO05D005596 5.6e-12 75.5 163 35.0
QL02p096023 Quercus lobata HOM05D004673 ORTHO05D005596 7.3e-12 75.1 135 39.3
CSS0005892 Camellia sinensis var. sinensis HOM05D004673 ORTHO05D005596 9.5e-12 74.7 141 39.0
MBI11_g31286_MAGBIO Magnolia biondii HOM05D004673 ORTHO05D005596 9.5e-12 74.7 122 41.8
Manes.03G086903 Manihot esculenta HOM05D004673 ORTHO05D005596 9.5e-12 74.7 181 34.3
HPP92_013962 Vanilla planifolia HOM05D004673 ORTHO05D005596 1.6e-11 73.9 170 35.3
DCAR_030979 Daucus carota HOM05D004673 ORTHO05D005596 2.8e-11 73.2 175 32.0
Sed0024334 Sechium edule HOM05D004673 ORTHO05D005596 2.8e-11 73.2 116 39.7
Thhalv10027707m.g Eutrema salsugineum HOM05D004673 ORTHO05D005596 3.6e-11 72.8 171 33.9
QL02p095991 Quercus lobata HOM05D004673 ORTHO05D005596 3.6e-11 72.8 126 38.9
BcaB07g31134 Brassica carinata HOM05D004673 ORTHO05D005596 4.7e-11 72.4 143 38.5
COL.COLO4_13599 Corchorus olitorius HOM05D004673 ORTHO05D005596 4.7e-11 72.4 158 34.8
HanXRQChr13g0405711 Helianthus annuus HOM05D004673 ORTHO05D005596 4.7e-11 72.4 125 37.6
CARHR253290 Cardamine hirsuta HOM05D004673 ORTHO05D005596 6.2e-11 72.0 143 46.9
Sp3g02900 Schrenkiella parvula HOM05D004673 ORTHO05D005596 1.1e-10 71.2 131 37.4
TWI60G0809 Tripterygium wilfordii HOM05D004673 ORTHO05D005596 1.4e-10 70.9 130 37.7
Lsat_1_v5_gn_6_55380 Lactuca sativa HOM05D004673 ORTHO05D005596 1.8e-10 70.5 156 33.3
Carub.0003s0318 Capsella rubella HOM05D004673 ORTHO05D005596 2.3e-10 70.1 169 40.8
Cpa.g.sc1158.1 Carica papaya HOM05D004673 ORTHO05D005596 2.3e-10 70.1 117 39.3
DCAR_013113 Daucus carota HOM05D004673 ORTHO05D005596 2.3e-10 70.1 174 30.5
CARHR078050 Cardamine hirsuta HOM05D004673 ORTHO05D005596 3.1e-10 69.7 159 41.5
CARHR253360 Cardamine hirsuta HOM05D004673 ORTHO05D005596 4.0e-10 69.3 110 38.2
ClCG03G014570 Citrullus lanatus HOM05D004673 ORTHO05D005596 4.0e-10 69.3 112 39.3
MELO3C015571.2 Cucumis melo HOM05D004673 ORTHO05D005596 4.0e-10 69.3 176 31.8
HPP92_013963 Vanilla planifolia HOM05D004673 ORTHO05D005596 5.2e-10 68.9 162 32.7
DCAR_032195 Daucus carota HOM05D004673 ORTHO05D005596 6.8e-10 68.6 112 36.6
Hma1.2p1_0589F.1_g184830 Hydrangea macrophylla HOM05D004673 ORTHO05D005596 8.9e-10 68.2 80 46.2
QL01p004727 Quercus lobata HOM05D004673 ORTHO05D005596 8.9e-10 68.2 164 32.3
Aa31LG5G14520 Aethionema arabicum HOM05D004673 ORTHO05D005596 1.2e-09 67.8 143 33.6
Thhalv10027711m.g Eutrema salsugineum HOM05D004673 ORTHO05D005596 1.2e-09 67.8 168 38.7
HPP92_013964 Vanilla planifolia HOM05D004673 ORTHO05D005596 1.2e-09 67.8 154 34.4
HanXRQChr13g0405741 Helianthus annuus HOM05D004673 ORTHO05D005596 1.5e-09 67.4 117 36.8
QL01p016345 Quercus lobata HOM05D004673 ORTHO05D005596 1.5e-09 67.4 178 33.1
HanXRQChr07g0187121 Helianthus annuus HOM05D004673 ORTHO05D005596 2.0e-09 67.0 122 36.1
A03p33470 Brassica napus HOM05D004673 ORTHO05D005596 2.6e-09 66.6 122 35.2
BraA03t12522Z Brassica rapa HOM05D004673 ORTHO05D005596 2.6e-09 66.6 122 34.4
CsaV3_1G041610 Cucumis sativus L. HOM05D004673 ORTHO05D005596 2.6e-09 66.6 156 32.1
DCAR_030114 Daucus carota HOM05D004673 ORTHO05D005596 2.6e-09 66.6 169 33.7
C03p40670 Brassica napus HOM05D004673 ORTHO05D005596 3.4e-09 66.2 108 37.0
AUR62032055 Chenopodium quinoa HOM05D004673 ORTHO05D005596 3.4e-09 66.2 159 32.7
QL01p004463 Quercus lobata HOM05D004673 ORTHO05D005596 3.4e-09 66.2 152 32.9
QL01p004480 Quercus lobata HOM05D004673 ORTHO05D005596 3.4e-09 66.2 184 31.0
Carub.0006s3213 Capsella rubella HOM05D004673 ORTHO05D005596 4.4e-09 65.9 151 39.7
ECA233G2517 Erigeron canadensis HOM05D000002 ORTHO05D000001 4.4e-09 65.9 159 33.3
DCAR_030101 Daucus carota HOM05D004673 ORTHO05D005596 5.8e-09 65.5 164 33.5
AT4G04220 Arabidopsis thaliana HOM05D004673 ORTHO05D005596 7.5e-09 65.1 129 37.2
BolC3t16332H Brassica oleracea HOM05D004673 ORTHO05D005596 7.5e-09 65.1 122 34.4
DCAR_030125 Daucus carota HOM05D004673 ORTHO05D005596 7.5e-09 65.1 113 37.2
CARHR253220 Cardamine hirsuta HOM05D004673 ORTHO05D005596 9.8e-09 64.7 150 40.7
ECA233G4672 Erigeron canadensis HOM05D004673 ORTHO05D005596 9.8e-09 64.7 187 33.7
GSVIVG01025479001 Vitis vinifera HOM05D004673 ORTHO05D005596 1.7e-08 63.9 137 37.2
BcaC01g00553 Brassica carinata HOM05D000053 ORTHO05D000035 2.2e-08 63.5 119 37.8
C03p81400 Brassica napus HOM05D000053 ORTHO05D000035 2.2e-08 63.5 119 37.8
BolC3t20404H Brassica oleracea HOM05D000053 ORTHO05D000035 2.2e-08 63.5 119 37.8
GSVIVG01025484001 Vitis vinifera HOM05D004673 ORTHO05D005596 2.9e-08 63.2 123 34.1
Lsat_1_v5_gn_6_55460 Lactuca sativa HOM05D004673 ORTHO05D005596 3.7e-08 62.8 105 38.1
QL01p004552 Quercus lobata HOM05D004673 ORTHO05D005596 3.7e-08 62.8 169 36.1
AL6G47840 Arabidopsis lyrata HOM05D004673 ORTHO05D005596 6.4e-08 62.0 120 49.2
A08p13920 Brassica napus HOM05D000053 ORTHO05D000035 8.3e-08 61.6 106 39.6
AUR62032689 Chenopodium quinoa HOM05D000750 ORTHO05D000714 1.1e-07 61.2 164 32.9
Lsat_1_v5_gn_6_55581 Lactuca sativa HOM05D004673 ORTHO05D005596 1.1e-07 61.2 180 29.4
BcaB04g21147 Brassica carinata HOM05D000053 ORTHO05D000035 1.4e-07 60.8 110 36.4
DCAR_030113 Daucus carota HOM05D004673 ORTHO05D005596 1.4e-07 60.8 130 35.4
QL01p016358 Quercus lobata HOM05D004673 ORTHO05D005596 1.4e-07 60.8 130 35.4
Ah.02g116710 Amaranthus hybridus HOM05D000053 ORTHO05D000448 2.4e-07 60.1 117 37.6
BraA08t33377Z Brassica rapa HOM05D000053 ORTHO05D000035 2.4e-07 60.1 100 41.0
BcaC01g00554 Brassica carinata HOM05D000053 ORTHO05D000035 3.2e-07 59.7 108 38.0
BolC1t05336H Brassica oleracea HOM05D000053 ORTHO05D000035 3.2e-07 59.7 112 37.5
C03p81410 Brassica napus HOM05D000053 ORTHO05D000035 4.1e-07 59.3 106 36.8
BolC3t20405H Brassica oleracea HOM05D000053 ORTHO05D000035 4.1e-07 59.3 106 36.8
CARHR176300 Cardamine hirsuta HOM05D000053 ORTHO05D000035 9.2e-07 58.2 106 35.8
Aa31LG5G15700 Aethionema arabicum HOM05D001985 ORTHO05D002261 1.2e-06 57.8 119 32.8
ECA240G1657 Erigeron canadensis HOM05D004673 ORTHO05D005596 1.2e-06 57.8 158 29.1
AT3G11080 Arabidopsis thaliana HOM05D000053 ORTHO05D000035 1.6e-06 57.4 115 35.7
CARHR253180 Cardamine hirsuta HOM05D004673 ORTHO05D005596 1.6e-06 57.4 178 41.0
QL11p025506 Quercus lobata HOM05D000053 ORTHO05D000035 1.6e-06 57.4 183 35.0
AL1G47960 Arabidopsis lyrata HOM05D000053 ORTHO05D000035 2.1e-06 57.0 123 35.8
AL3G46870 Arabidopsis lyrata HOM05D000053 ORTHO05D000035 2.1e-06 57.0 109 34.9
AUR62002214 Chenopodium quinoa HOM05D000053 ORTHO05D000448 2.7e-06 56.6 127 35.4
vmacro23200 Vaccinium macrocarpon HOM05D005410 ORTHO05D007394 2.7e-06 56.6 96 38.5
Carub.0003s0465 Capsella rubella HOM05D000053 ORTHO05D000035 3.5e-06 56.2 121 35.5
CARHR080100 Cardamine hirsuta HOM05D000053 ORTHO05D000035 6.0e-06 55.5 109 34.9
Phvul.008G043400 Phaseolus vulgaris HOM05D000053 ORTHO05D000035 6.0e-06 55.5 105 34.3
Sp7g03130 Schrenkiella parvula HOM05D000053 ORTHO05D000035 6.0e-06 55.5 107 34.6
CARHR291280 Cardamine hirsuta HOM05D000053 ORTHO05D000035 7.8e-06 55.1 107 36.4


User provided reference genes

Program Settings