Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g03549 Nelumbo nucifera HOM05D005226 ORTHO05D004666 1.1e-75 286.6 151 100.0
Nn5g29365 Nelumbo nucifera HOM05D005226 ORTHO05D004666 3.7e-34 148.7 109 71.6
TAR624G0719 Trochodendron aralioides HOM05D005226 ORTHO05D004666 1.1e-33 147.1 107 71.0
TAR627G0695 Trochodendron aralioides HOM05D005226 ORTHO05D004666 1.3e-31 140.2 104 70.2
Duzib235G0113 Durio zibethinus HOM05D005226 ORTHO05D004666 1.4e-30 136.7 111 66.7
Aqoxy1G03603 Aquilegia oxysepala HOM05D005226 ORTHO05D004666 1.8e-28 129.8 110 61.8
COL.COLO4_31758 Corchorus olitorius HOM05D005226 ORTHO05D004666 3.9e-28 128.6 111 62.2
Dinv20040 Davidia involucrata HOM05D005226 ORTHO05D004666 8.8e-28 127.5 106 66.0
Prupe.4G022200 Prunus persica HOM05D005226 ORTHO05D004666 9.7e-27 124.0 107 63.6
Thecc.06G219100 Theobroma cacao HOM05D005226 ORTHO05D004666 2.2e-26 122.9 101 66.3
Medtr2g022960 Medicago truncatula HOM05D005226 ORTHO05D004666 2.8e-26 122.5 107 57.9
Thecc.06G087600 Theobroma cacao HOM05D005226 ORTHO05D004666 4.8e-26 121.7 105 64.8
Ciclev10017536m.g Citrus clementina HOM05D005226 ORTHO05D004666 8.2e-26 120.9 109 56.9
Glyma.15G107000 Glycine max HOM05D005226 ORTHO05D004666 1.4e-25 120.2 109 58.7
Cfa021903 Carpinus fangiana HOM05D005226 ORTHO05D004666 1.8e-25 119.8 109 60.6
Glyma.13G205400 Glycine max HOM05D005226 ORTHO05D004666 4.1e-25 118.6 112 58.0
Duzib160G0401 Durio zibethinus HOM05D005226 ORTHO05D004666 6.9e-25 117.9 111 60.4
CiPaw.09G090600 Carya illinoinensis HOM05D005226 ORTHO05D004666 9.1e-25 117.5 111 56.8
Gohir.A05G169600 Gossypium hirsutum HOM05D005226 ORTHO05D004666 2.0e-24 116.3 113 59.3
Gorai.009G178000 Gossypium raimondii HOM05D005226 ORTHO05D004666 2.0e-24 116.3 113 59.3
TPR.G7637 Trifolium pratense HOM05D005226 ORTHO05D004666 3.4e-24 115.5 107 55.1
CAN.G569.14 Capsicum annuum HOM05D005226 ORTHO05D004666 4.5e-24 115.2 109 55.0
Duzib192G0836 Durio zibethinus HOM05D005226 ORTHO05D004666 5.9e-24 114.8 110 59.1
Gohir.D05G172800 Gossypium hirsutum HOM05D005226 ORTHO05D004666 1.7e-23 113.2 113 58.4
Manes.16G008100 Manihot esculenta HOM05D005226 ORTHO05D004666 1.7e-23 113.2 152 49.3
Cfa000235 Carpinus fangiana HOM05D005226 ORTHO05D004666 2.9e-23 112.5 105 57.1
Nitab4.5_0000005g0440 Nicotiana tabacum HOM05D005226 ORTHO05D004666 3.8e-23 112.1 105 57.1
Lalb_Chr18g0056301 Lupinus albus HOM05D005226 ORTHO05D004666 6.5e-23 111.3 107 53.3
Solyc02g080450.1 Solanum lycopersicum HOM05D005226 ORTHO05D004666 6.5e-23 111.3 106 56.6
Sopen02g025140 Solanum pennellii HOM05D005226 ORTHO05D004666 6.5e-23 111.3 106 56.6
Haze_06787 Corylus avellana HOM05D005226 ORTHO05D004666 1.4e-22 110.2 111 59.5
Lalb_Chr15g0087551 Lupinus albus HOM05D005226 ORTHO05D004666 1.4e-22 110.2 107 52.3
Gohir.D10G013300 Gossypium hirsutum HOM05D005226 ORTHO05D004666 1.9e-22 109.8 97 59.8
Gorai.011G015000 Gossypium raimondii HOM05D005226 ORTHO05D004666 1.9e-22 109.8 97 59.8
Nitab4.5_0003254g0050 Nicotiana tabacum HOM05D005226 ORTHO05D004666 1.9e-22 109.8 104 56.7
Phvul.006G150300 Phaseolus vulgaris HOM05D005226 ORTHO05D004666 2.5e-22 109.4 112 54.5
Gohir.A10G013400 Gossypium hirsutum HOM05D005226 ORTHO05D004666 4.2e-22 108.6 94 57.4
TWI38G0534 Tripterygium wilfordii HOM05D005226 ORTHO05D004666 4.2e-22 108.6 105 59.0
Nitab4.5_0006137g0040 Nicotiana tabacum HOM05D005226 ORTHO05D004666 5.5e-22 108.2 98 59.2
Potri.004G016800 Populus trichocarpa HOM05D005226 ORTHO05D004666 5.5e-22 108.2 103 58.3
QL05p073519 Quercus lobata HOM05D005226 ORTHO05D004666 5.5e-22 108.2 108 53.7
QL05p073756 Quercus lobata HOM05D005226 ORTHO05D004666 5.5e-22 108.2 108 53.7
VMungo0540G0286 Vigna mungo HOM05D005226 ORTHO05D004666 5.5e-22 108.2 109 54.1
Aqoxy4G01362 Aquilegia oxysepala HOM05D005226 ORTHO05D004666 7.2e-22 107.8 93 60.2
MD05G1344200 Malus domestica HOM05D005226 ORTHO05D004666 7.2e-22 107.8 112 56.2
Rhsim02G0108700 Rhododendron simsii HOM05D005226 ORTHO05D004666 7.2e-22 107.8 99 60.6
Lj6g0027274 Lotus japonicus HOM05D005226 ORTHO05D004666 1.2e-21 107.1 107 53.3
CiPaw.10G070100 Carya illinoinensis HOM05D005226 ORTHO05D004666 1.6e-21 106.7 101 57.4
Haze_09878 Corylus avellana HOM05D005226 ORTHO05D004666 1.6e-21 106.7 110 56.4
Rhsim02G0108200 Rhododendron simsii HOM05D005226 ORTHO05D004666 1.6e-21 106.7 100 61.0
Rhsim02G0109500 Rhododendron simsii HOM05D005226 ORTHO05D004666 2.1e-21 106.3 98 60.2
Atru.chr10.2207 Acer truncatum HOM05D005226 ORTHO05D004666 1.0e-20 104.0 116 51.7
Potri.011G002100 Populus trichocarpa HOM05D005226 ORTHO05D004666 1.0e-20 104.0 103 56.3
Sabra04G0009100 Salix brachista HOM05D005226 ORTHO05D004666 1.0e-20 104.0 103 56.3
CANSAT56G2875 Cannabis sativa HOM05D005226 ORTHO05D004666 1.8e-20 103.2 107 56.1
PGSC0003DMG400016491 Solanum tuberosum HOM05D005226 ORTHO05D004666 1.1e-19 100.5 101 53.5
FAN25G2807 Fragaria x ananassa HOM05D005226 ORTHO05D004666 3.3e-19 99.0 87 58.6
Cc09_g01800 Coffea canephora HOM05D005226 ORTHO05D004666 4.4e-19 98.6 110 50.9
MD00G1206700 Malus domestica HOM05D005226 ORTHO05D004666 7.4e-19 97.8 109 56.0
MD10G1320200 Malus domestica HOM05D005226 ORTHO05D004666 7.4e-19 97.8 109 56.0
RcHm_v2.0_Chr5g0003391 Rosa chinensis HOM05D005226 ORTHO05D004666 9.7e-19 97.4 97 54.6
Eucgr.E04074 Eucalyptus grandis HOM05D005226 ORTHO05D004666 1.3e-18 97.1 106 50.0
FvH4_3g02270 Fragaria vesca HOM05D005226 ORTHO05D004666 2.2e-18 96.3 87 57.5
PGR042G2779 Punica granatum HOM05D005226 ORTHO05D004666 2.2e-18 96.3 109 54.1
Hma1.2p1_1142F.1_g260990 Hydrangea macrophylla HOM05D005226 ORTHO05D004666 8.2e-18 94.4 93 55.9
MBI18_g02740_MAGBIO Magnolia biondii HOM05D005226 ORTHO05D004666 1.4e-17 93.6 98 50.0
Eucgr.E04072 Eucalyptus grandis HOM05D005226 ORTHO05D004666 1.8e-17 93.2 88 55.7
Rhsim02G0109000 Rhododendron simsii HOM05D005226 ORTHO05D004666 2.4e-17 92.8 89 57.3
PSO832G1518 Papaver somniferum HOM05D005226 ORTHO05D004666 4.1e-17 92.0 103 44.7
Oeu051213.1 Olea europaea HOM05D005226 ORTHO05D004666 7.0e-17 91.3 90 52.2
DCAR_004212 Daucus carota HOM05D005226 ORTHO05D004666 9.1e-17 90.9 94 55.3
Eucgr.L02166 Eucalyptus grandis HOM05D005226 ORTHO05D004666 9.1e-17 90.9 87 58.6
Eucgr.E04071 Eucalyptus grandis HOM05D005226 ORTHO05D004666 2.6e-16 89.4 88 54.5
Eucgr.D01311 Eucalyptus grandis HOM05D005226 ORTHO05D004666 3.5e-16 89.0 87 57.5
Gohir.A06G148050 Gossypium hirsutum HOM05D005226 ORTHO05D004666 4.5e-16 88.6 92 55.4
Oeu033894.1 Olea europaea HOM05D005226 ORTHO05D004666 4.5e-16 88.6 101 49.5
ClCG01G022050 Citrullus lanatus HOM05D005226 ORTHO05D004666 1.3e-15 87.0 95 48.4
Peaxi162Scf00262g00094 Petunia axillaris HOM05D005226 ORTHO05D004666 1.3e-15 87.0 96 50.0
MELO3C007384.2 Cucumis melo HOM05D005226 ORTHO05D004666 1.7e-15 86.7 97 48.5
DCAR_008143 Daucus carota HOM05D005226 ORTHO05D004666 2.2e-15 86.3 95 49.5
Gohir.D06G153975 Gossypium hirsutum HOM05D005226 ORTHO05D004666 2.2e-15 86.3 92 55.4
Gorai.010G180000 Gossypium raimondii HOM05D005226 ORTHO05D004666 2.2e-15 86.3 92 54.3
PSO210G5560 Papaver somniferum HOM05D005226 ORTHO05D004666 2.2e-15 86.3 103 42.7
Eucgr.D01314 Eucalyptus grandis HOM05D005226 ORTHO05D004666 3.8e-15 85.5 86 53.5
Nitab4.5_0000389g0060 Nicotiana tabacum HOM05D005226 ORTHO05D004666 6.5e-15 84.7 91 50.5
CsaV3_6G049110 Cucumis sativus L. HOM05D005226 ORTHO05D004666 8.5e-15 84.3 97 48.5
SGA_v2.0_scaffold4G01918 Striga asiatica HOM05D005226 ORTHO05D004666 1.1e-14 84.0 110 46.4
PGR004G1778 Punica granatum HOM05D005226 ORTHO05D004666 2.5e-14 82.8 103 46.6
arahy.Tifrunner.gnm1.ann1.0GES1T Arachis hypogaea HOM05D005226 ORTHO05D004666 3.2e-14 82.4 102 52.0
SGA_v2.0_scaffold89G27461 Striga asiatica HOM05D005226 ORTHO05D004666 3.2e-14 82.4 107 43.9
Glyma.18G063800 Glycine max HOM05D005226 ORTHO05D004666 9.4e-14 80.9 67 59.7
Sed0005209 Sechium edule HOM05D005226 ORTHO05D004666 1.6e-13 80.1 103 47.6
Sed0027353 Sechium edule HOM05D005226 ORTHO05D004666 2.1e-13 79.7 80 53.8
PGSC0003DMG400004522 Solanum tuberosum HOM05D005226 ORTHO05D004666 2.1e-13 79.7 90 47.8
arahy.Tifrunner.gnm1.ann1.1P1WAU Arachis hypogaea HOM05D005226 ORTHO05D004666 2.7e-13 79.3 63 68.3
Lsat_1_v5_gn_4_59601 Lactuca sativa HOM05D005226 ORTHO05D004666 4.7e-13 78.6 113 45.1
AT4G04745 Arabidopsis thaliana HOM05D009543 ORTHO05D004666 6.1e-13 78.2 118 44.9
Migut.M01309 Erythranthe guttata HOM05D005226 ORTHO05D004666 1.4e-12 77.0 109 43.1
ClCG03G004790 Citrullus lanatus HOM05D005226 ORTHO05D004666 2.3e-12 76.3 80 50.0
MSTRG.13145 Avicennia marina HOM05D005226 ORTHO05D004666 5.2e-12 75.1 86 54.7
Sed0011520 Sechium edule HOM05D005226 ORTHO05D004666 5.2e-12 75.1 112 38.4
C03p36430 Brassica napus HOM05D009543 ORTHO05D004666 8.8e-12 74.3 115 40.0
BolC3t15955H Brassica oleracea HOM05D009543 ORTHO05D004666 8.8e-12 74.3 115 40.0
BcaB01g02575 Brassica carinata HOM05D009543 ORTHO05D004666 1.2e-11 73.9 115 40.9
A03p30180 Brassica napus HOM05D009543 ORTHO05D004666 1.2e-11 73.9 115 39.1
BraA03t12202Z Brassica rapa HOM05D009543 ORTHO05D004666 1.2e-11 73.9 115 39.1
Peaxi162Scf00565g00021 Petunia axillaris HOM05D005226 ORTHO05D004666 1.2e-11 73.9 79 51.9
ECA234G1355 Erigeron canadensis HOM05D005226 ORTHO05D004666 1.5e-11 73.6 108 40.7
HanXRQChr16g0515991 Helianthus annuus HOM05D005226 ORTHO05D004666 2.0e-11 73.2 106 43.4
MELO3C002462.2 Cucumis melo HOM05D005226 ORTHO05D004666 2.6e-11 72.8 81 46.9
Peaxi162Scf00565g00036 Petunia axillaris HOM05D005226 ORTHO05D004666 2.6e-11 72.8 92 48.9
CsaV3_1G010830 Cucumis sativus L. HOM05D005226 ORTHO05D004666 4.4e-11 72.0 80 47.5
Thhalv10029169m.g Eutrema salsugineum HOM05D009543 ORTHO05D004666 7.5e-11 71.2 120 37.5
C08p14770 Brassica napus HOM05D005226 ORTHO05D004666 9.7e-11 70.9 116 43.1
AL6G48230 Arabidopsis lyrata HOM05D009543 ORTHO05D004666 1.3e-10 70.5 118 39.0
Medtr3g463740 Medicago truncatula HOM05D005226 ORTHO05D004666 1.3e-10 70.5 67 55.2
A08p33360 Brassica napus HOM05D005226 ORTHO05D004666 1.7e-10 70.1 114 44.7
Carub.0001s1129 Capsella rubella HOM05D005226 ORTHO05D004666 1.7e-10 70.1 115 46.1
BolC8t49112H Brassica oleracea HOM05D005226 ORTHO05D004666 2.8e-10 69.3 115 42.6
AT1G11655 Arabidopsis thaliana HOM05D005226 ORTHO05D004666 8.2e-10 67.8 113 43.4
BcaC07g38677 Brassica carinata HOM05D005226 ORTHO05D004666 8.2e-10 67.8 114 42.1
AL1G22790 Arabidopsis lyrata HOM05D005226 ORTHO05D004666 1.1e-09 67.4 113 45.1
BraA08t35253Z Brassica rapa HOM05D005226 ORTHO05D004666 1.1e-09 67.4 114 43.9
BcaNung04807 Brassica carinata HOM05D005226 ORTHO05D004666 1.4e-09 67.0 113 41.6
A09p64400 Brassica napus HOM05D005226 ORTHO05D004666 1.4e-09 67.0 113 39.8
C08p48100 Brassica napus HOM05D005226 ORTHO05D004666 1.4e-09 67.0 113 38.9
BraA09t41784Z Brassica rapa HOM05D005226 ORTHO05D004666 1.4e-09 67.0 113 39.8
Aa31LG1G3110 Aethionema arabicum HOM05D005226 ORTHO05D004666 1.8e-09 66.6 112 39.3
Thhalv10009573m.g Eutrema salsugineum HOM05D005226 ORTHO05D004666 1.8e-09 66.6 113 40.7
TPR.G21187 Trifolium pratense HOM05D005226 ORTHO05D004666 1.8e-09 66.6 66 50.0
Carub.0006s3264 Capsella rubella HOM05D009543 ORTHO05D004666 3.1e-09 65.9 129 34.9
CARHR252810 Cardamine hirsuta HOM05D009543 ORTHO05D004666 3.1e-09 65.9 120 39.2
SalBow8G4932 Salvia bowleyana HOM05D005226 ORTHO05D004666 3.1e-09 65.9 97 44.3
Sp6g04195 Schrenkiella parvula HOM05D009543 ORTHO05D004666 3.1e-09 65.9 123 35.0
CARHR011960 Cardamine hirsuta HOM05D005226 ORTHO05D004666 4.1e-09 65.5 114 42.1
ATR0752G088 Amborella trichopoda HOM05D005226 ORTHO05D004666 7.0e-09 64.7 104 37.5
BolC5t29718H Brassica oleracea HOM05D005226 ORTHO05D004666 7.0e-09 64.7 113 41.6
THA.LOC104806304 Tarenaya hassleriana HOM05D005226 ORTHO05D004666 1.2e-08 63.9 91 41.8
BcaC07g41768 Brassica carinata HOM05D005226 ORTHO05D004666 1.6e-08 63.5 77 48.1
A06p08210 Brassica napus HOM05D005226 ORTHO05D004666 2.0e-08 63.2 112 39.3
A09p26130 Brassica napus HOM05D009543 ORTHO05D004666 2.0e-08 63.2 116 37.9
BraA06t24021Z Brassica rapa HOM05D005226 ORTHO05D004666 2.0e-08 63.2 112 39.3
BraA09t38180Z Brassica rapa HOM05D009543 ORTHO05D004666 2.0e-08 63.2 116 37.9
THA.LOC104818840 Tarenaya hassleriana HOM05D005226 ORTHO05D004666 2.0e-08 63.2 74 51.4
BcaC04g21321 Brassica carinata HOM05D009543 ORTHO05D004666 2.7e-08 62.8 121 35.5
C09p33170 Brassica napus HOM05D009543 ORTHO05D004666 2.7e-08 62.8 121 35.5
BolC9t56151H Brassica oleracea HOM05D009543 ORTHO05D004666 2.7e-08 62.8 121 35.5
arahy.Tifrunner.gnm1.ann1.89FC4C Arachis hypogaea HOM05D005226 ORTHO05D004666 7.7e-08 61.2 67 49.3
BcaC05g25032 Brassica carinata HOM05D005226 ORTHO05D004666 7.7e-08 61.2 112 39.3
C05p09770 Brassica napus HOM05D005226 ORTHO05D004666 1.0e-07 60.8 113 38.9
BcaB01g01831 Brassica carinata HOM05D009543 ORTHO05D004666 1.3e-07 60.5 121 35.5
BcaB03g13244 Brassica carinata HOM05D005226 ORTHO05D004666 1.3e-07 60.5 79 45.6
BcaB08g37410 Brassica carinata HOM05D005226 ORTHO05D004666 2.2e-07 59.7 77 46.8
BraA01t01269Z Brassica rapa HOM05D009543 ORTHO05D004666 2.9e-07 59.3 76 44.7
BcaC09g51183 Brassica carinata HOM05D009543 ORTHO05D004666 3.8e-07 58.9 76 44.7
C01p15970 Brassica napus HOM05D009543 ORTHO05D004666 3.8e-07 58.9 76 44.7
BolC1t01557H Brassica oleracea HOM05D009543 ORTHO05D004666 3.8e-07 58.9 76 44.7
Cfa017341 Carpinus fangiana HOM05D005226 ORTHO05D004666 3.8e-07 58.9 67 50.7
EL10Ac8g20036 Beta vulgaris HOM05D005226 ORTHO05D004666 1.1e-06 57.4 70 44.3
AL7G31950 Arabidopsis lyrata HOM05D009543 ORTHO05D004666 2.5e-06 56.2 76 43.4
Thhalv10026583m.g Eutrema salsugineum HOM05D009543 ORTHO05D004666 4.2e-06 55.5 67 47.8
BcaNung02262 Brassica carinata HOM05D009543 ORTHO05D004666 5.5e-06 55.1 76 40.8
CARHR228690 Cardamine hirsuta HOM05D009543 ORTHO05D004666 7.2e-06 54.7 76 40.8
unitig_26.g9388 Utricularia gibba HOM05D005226 ORTHO05D004666 9.4e-06 54.3 81 49.4


User provided reference genes

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