Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g03547 Nelumbo nucifera HOM05D006489 ORTHO05D007556 5.1e-301 1036.9 526 100.0
TAR627G0165 Trochodendron aralioides HOM05D006489 ORTHO05D007556 5.2e-120 435.6 475 51.4
Dinv22265 Davidia involucrata HOM05D006489 ORTHO05D007556 5.5e-101 372.5 472 46.2
Actinidia35341 Actinidia chinensis HOM05D006489 ORTHO05D007556 6.9e-88 328.9 479 43.4
MBI02_g07154_MAGBIO Magnolia biondii HOM05D006489 ORTHO05D007556 9.0e-88 328.6 445 45.8
vmacro09717 Vaccinium macrocarpon HOM05D006489 ORTHO05D007556 5.0e-86 322.8 477 44.0
MBI18_g45561_MAGBIO Magnolia biondii HOM05D006489 ORTHO05D007556 7.2e-85 318.9 491 44.8
Hma1.2p1_1162F.1_g262610 Hydrangea macrophylla HOM05D006489 ORTHO05D007556 1.2e-79 301.6 478 41.0
CSS0036232 Camellia sinensis var. sinensis HOM05D006489 ORTHO05D007556 6.5e-78 295.8 518 39.0
CSS0017234 Camellia sinensis var. sinensis HOM05D006489 ORTHO05D007556 3.2e-77 293.5 518 38.8
Hma1.2p1_1162F.1_g262600 Hydrangea macrophylla HOM05D006489 ORTHO05D007556 9.4e-77 292.0 453 41.7
Aqoxy1G03602 Aquilegia oxysepala HOM05D006489 ORTHO05D007556 1.7e-73 281.2 488 40.6
QL08p010454 Quercus lobata HOM05D006489 ORTHO05D007556 1.1e-72 278.5 510 38.2
CiPaw.12G129400 Carya illinoinensis HOM05D006489 ORTHO05D007556 4.5e-71 273.1 528 35.8
Haze_09673 Corylus avellana HOM05D006489 ORTHO05D007556 2.5e-69 267.3 525 38.1
Nitab4.5_0011175g0010 Nicotiana tabacum HOM05D006489 ORTHO05D007556 7.9e-68 262.3 477 39.0
TWI15G0832 Tripterygium wilfordii HOM05D006489 ORTHO05D007556 1.0e-67 261.9 485 40.4
Sabra11G0125100 Salix brachista HOM05D006489 ORTHO05D007556 6.7e-67 259.2 494 40.1
Peaxi162Scf00964g00023 Petunia axillaris HOM05D006489 ORTHO05D007556 3.3e-66 256.9 473 38.7
Ciclev10008166m.g Citrus clementina HOM05D006489 ORTHO05D007556 2.2e-65 254.2 483 38.3
RhsimUnG0250900 Rhododendron simsii HOM05D006489 ORTHO05D007556 2.2e-65 254.2 612 33.3
Nitab4.5_0001913g0140 Nicotiana tabacum HOM05D006489 ORTHO05D007556 2.8e-65 253.8 478 37.2
Cpa.g.sc97.9 Carica papaya HOM05D006489 ORTHO05D007556 2.6e-63 247.3 471 39.1
Potri.011G139200 Populus trichocarpa HOM05D006489 ORTHO05D007556 5.9e-63 246.1 492 38.2
PSO541G0970 Papaver somniferum HOM05D006489 ORTHO05D007556 1.3e-62 245.0 476 39.7
Solyc07g064570.3 Solanum lycopersicum HOM05D006489 ORTHO05D007556 3.8e-62 243.4 485 37.1
Manes.03G129000 Manihot esculenta HOM05D006489 ORTHO05D007556 1.1e-61 241.9 486 38.9
PGSC0003DMG400022321 Solanum tuberosum HOM05D006489 ORTHO05D007556 2.5e-61 240.7 487 37.0
Sopen07g032750 Solanum pennellii HOM05D006489 ORTHO05D007556 3.6e-60 236.9 485 36.7
ATR0752G219 Amborella trichopoda HOM05D006489 ORTHO05D007556 4.7e-60 236.5 515 35.3
Cfa020351 Carpinus fangiana HOM05D006489 ORTHO05D007556 2.3e-59 234.2 557 35.4
Duzib213G0414 Durio zibethinus HOM05D006489 ORTHO05D007556 2.3e-59 234.2 475 35.8
Cc09_g09720 Coffea canephora HOM05D006489 ORTHO05D007556 8.8e-59 232.3 487 35.1
DCAR_022559 Daucus carota HOM05D006489 ORTHO05D007556 1.1e-58 231.9 483 36.2
Gohir.D08G030200 Gossypium hirsutum HOM05D006489 ORTHO05D007556 9.7e-58 228.8 477 36.3
Gorai.004G027700 Gossypium raimondii HOM05D006489 ORTHO05D007556 2.8e-57 227.3 475 35.6
CDE02G1695 Ceratophyllum demersum HOM05D006489 ORTHO05D007556 3.7e-57 226.9 509 35.2
GSVIVG01037644001 Vitis vinifera HOM05D006489 ORTHO05D007556 4.1e-56 223.4 475 34.9
CAN.G337.129 Capsicum annuum HOM05D006489 ORTHO05D007556 3.5e-55 220.3 539 33.0
Oeu062694.1 Olea europaea HOM05D006489 ORTHO05D007556 6.5e-54 216.1 471 35.7
Prupe.4G212300 Prunus persica HOM05D006489 ORTHO05D007556 1.1e-53 215.3 521 33.8
COL.COLO4_19762 Corchorus olitorius HOM05D006489 ORTHO05D007556 4.2e-53 213.4 409 35.7
CDE05G3553 Ceratophyllum demersum HOM05D006489 ORTHO05D007556 1.6e-52 211.5 509 35.0
Lj1A872T56 Lonicera japonica HOM05D006489 ORTHO05D007556 1.8e-51 208.0 356 38.8
RcHm_v2.0_Chr5g0039401 Rosa chinensis HOM05D006489 ORTHO05D007556 1.8e-51 208.0 499 34.1
MELO3C013233.2 Cucumis melo HOM05D006489 ORTHO05D007556 2.3e-51 207.6 531 34.3
Sed0018772 Sechium edule HOM05D006489 ORTHO05D007556 5.2e-51 206.5 524 34.5
Lsat_1_v5_gn_9_94040 Lactuca sativa HOM05D006489 ORTHO05D007556 6.8e-51 206.1 478 35.1
HPP92_013323 Vanilla planifolia HOM05D006489 ORTHO05D007556 7.5e-50 202.6 505 34.1
Gohir.A08G019600 Gossypium hirsutum HOM05D006489 ORTHO05D007556 2.2e-49 201.1 477 34.2
Sc03g0008610 Simmondsia chinensis HOM05D006489 ORTHO05D007556 1.4e-48 198.4 362 38.1
ECA240G0124 Erigeron canadensis HOM05D006489 ORTHO05D007556 3.1e-48 197.2 496 35.1
Migut.M01768 Erythranthe guttata HOM05D006489 ORTHO05D007556 3.1e-48 197.2 477 34.2
AT3G20490 Arabidopsis thaliana HOM05D006489 ORTHO05D007556 4.1e-48 196.8 479 35.9
Carub.0003s2045 Capsella rubella HOM05D006489 ORTHO05D007556 1.6e-47 194.9 483 36.0
CsaV3_7G021220 Cucumis sativus L. HOM05D006489 ORTHO05D007556 1.6e-47 194.9 521 34.9
ClCG05G014300 Citrullus lanatus HOM05D006489 ORTHO05D007556 2.0e-47 194.5 522 32.6
PGR083G1541 Punica granatum HOM05D006489 ORTHO05D007556 2.0e-47 194.5 469 34.1
HanXRQChr03g0076541 Helianthus annuus HOM05D006489 ORTHO05D007556 2.7e-47 194.1 483 35.6
HanXRQChr08g0220561 Helianthus annuus HOM05D006489 ORTHO05D007556 7.7e-47 192.6 497 35.0
AUR62020449 Chenopodium quinoa HOM05D006489 ORTHO05D007556 1.0e-46 192.2 567 30.0
CARHR096250 Cardamine hirsuta HOM05D006489 ORTHO05D007556 3.8e-46 190.3 490 35.5
MD03G1201600 Malus domestica HOM05D006489 ORTHO05D007556 6.5e-46 189.5 527 32.4
AL3G34270 Arabidopsis lyrata HOM05D006489 ORTHO05D007556 1.1e-45 188.7 474 35.4
FAN21G0022 Fragaria x ananassa HOM05D006489 ORTHO05D007556 2.5e-45 187.6 445 34.6
LjContig00272g0011286 Lotus japonicus HOM05D006489 ORTHO05D007556 2.5e-45 187.6 528 32.0
TPR.G1166 Trifolium pratense HOM05D006489 ORTHO05D007556 3.2e-45 187.2 531 31.1
VMungo0647G1504 Vigna mungo HOM05D006489 ORTHO05D007556 3.2e-45 187.2 569 31.5
FvH4_3g22630 Fragaria vesca HOM05D006489 ORTHO05D007556 5.5e-45 186.4 446 34.5
FAN25G3282 Fragaria x ananassa HOM05D006489 ORTHO05D007556 5.5e-45 186.4 399 35.3
PSO675G7358 Papaver somniferum HOM05D006489 ORTHO05D007556 1.2e-44 185.3 330 40.0
arahy.Tifrunner.gnm1.ann1.I0Q6ZZ Arachis hypogaea HOM05D006489 ORTHO05D007556 1.6e-44 184.9 526 32.9
Glyma.02G290600 Glycine max HOM05D006489 ORTHO05D007556 2.1e-44 184.5 569 31.8
Atru.chr2.3342 Acer truncatum HOM05D006489 ORTHO05D007556 2.7e-44 184.1 310 39.0
Phvul.008G267300 Phaseolus vulgaris HOM05D006489 ORTHO05D007556 4.0e-43 180.3 571 30.5
AUR62015766 Chenopodium quinoa HOM05D006489 ORTHO05D007556 6.8e-43 179.5 567 29.3
CANSAT11G2482 Cannabis sativa HOM05D006489 ORTHO05D007556 3.4e-42 177.2 548 32.3
Eucgr.F00766 Eucalyptus grandis HOM05D006489 ORTHO05D007556 1.7e-41 174.9 356 36.5
EL10Ac4g07823 Beta vulgaris HOM05D006489 ORTHO05D007556 6.3e-41 172.9 555 28.5
Ca_06317_v3 Cicer arietinum L. HOM05D006489 ORTHO05D007556 6.3e-41 172.9 528 31.2
THA.LOC104817868 Tarenaya hassleriana HOM05D006489 ORTHO05D007556 1.1e-40 172.2 483 32.7
Thecc.07G037900 Theobroma cacao HOM05D006489 ORTHO05D007556 1.8e-40 171.4 395 36.2
arahy.Tifrunner.gnm1.ann1.X6VDEX Arachis hypogaea HOM05D006489 ORTHO05D007556 2.4e-40 171.0 529 31.0
Aa31LG8G7280 Aethionema arabicum HOM05D006489 ORTHO05D007556 1.2e-39 168.7 479 33.0
Hund23251 Selenicereus undatus HOM05D006489 ORTHO05D007556 3.5e-39 167.2 431 32.9
SGA_v2.0_scaffold80G25948 Striga asiatica HOM05D006489 ORTHO05D007556 3.6e-36 157.1 489 30.9
Medtr5g092580 Medicago truncatula HOM05D006489 ORTHO05D007556 1.4e-35 155.2 603 29.9
Ca_25386_v3 Cicer arietinum L. HOM05D006489 ORTHO05D007556 1.8e-35 154.8 521 31.3
Lalb_Chr17g0348451 Lupinus albus HOM05D006489 ORTHO05D007556 5.7e-34 149.8 569 29.2
BraA04t16706Z Brassica rapa HOM05D006489 ORTHO05D007556 9.8e-34 149.1 485 32.4
Sed0021471 Sechium edule HOM05D006489 ORTHO05D007556 9.8e-34 149.1 405 30.4
Psat2g011040 Pisum sativum HOM05D006489 ORTHO05D007556 1.3e-33 148.7 530 31.3
BcaB06g27045 Brassica carinata HOM05D006489 ORTHO05D007556 2.2e-33 147.9 526 30.8
Atru.BG.151.p Acer truncatum HOM05D006489 ORTHO05D007556 3.7e-33 147.1 360 31.7
unitig_62.g23281 Utricularia gibba HOM05D008272 ORTHO05D010429 3.7e-33 147.1 470 31.7
FAN16G1490 Fragaria x ananassa HOM05D006489 ORTHO05D007556 2.0e-31 141.4 277 38.3
TPR.G36685 Trifolium pratense HOM05D006489 ORTHO05D007556 2.7e-31 141.0 520 29.4
Medtr6g033325 Medicago truncatula HOM05D006489 ORTHO05D007556 4.3e-29 133.7 561 28.2
Thhalv10028177m.g Eutrema salsugineum HOM05D006489 ORTHO05D007556 7.3e-29 132.9 497 30.8
Lalb_Chr10g0106941 Lupinus albus HOM05D006489 ORTHO05D007556 2.1e-28 131.3 372 29.6
C04p43850 Brassica napus HOM05D006489 ORTHO05D007556 5.2e-27 126.7 581 28.1
A04p10340 Brassica napus HOM05D006489 ORTHO05D007556 1.1e-24 119.0 584 28.1
Zm00001eb431300 Zea mays HOM05D006489 ORTHO05D007556 1.4e-24 118.6 491 29.7
BcaC02g09533 Brassica carinata HOM05D006489 ORTHO05D007556 2.4e-24 117.9 584 27.2
BolC4t25966H Brassica oleracea HOM05D006489 ORTHO05D007556 2.4e-24 117.9 584 27.2
Glyma.14G024100 Glycine max HOM05D006489 ORTHO05D007556 2.4e-24 117.9 379 28.2
Os04g0625100 Oryza sativa ssp. japonica HOM05D006489 ORTHO05D007556 1.1e-21 109.0 432 27.1
Lsat_1_v5_gn_7_108561 Lactuca sativa HOM05D006489 ORTHO05D007556 8.1e-20 102.8 486 26.5
Actinidia10733 Actinidia chinensis HOM05D006489 ORTHO05D007556 1.8e-19 101.7 127 44.9
Psat1g097920 Pisum sativum HOM05D006489 ORTHO05D007556 2.2e-17 94.7 636 25.9
Sp7g05570 Schrenkiella parvula HOM05D006489 ORTHO05D007556 1.1e-16 92.4 634 24.6
HanXRQChr11g0337701 Helianthus annuus HOM05D006489 ORTHO05D007556 1.4e-16 92.0 489 26.2
ECA236G1547 Erigeron canadensis HOM05D006489 ORTHO05D007556 9.2e-16 89.4 130 41.5
SEGI_05401 Sequoiadendron giganteum HOM05D006489 ORTHO05D007556 2.1e-15 88.2 520 26.0
Rhsim02G0082000 Rhododendron simsii HOM05D000432 ORTHO05D000320 7.1e-08 63.2 121 39.7
Rhsim04G0033600 Rhododendron simsii HOM05D000945 ORTHO05D007556 2.7e-07 61.2 77 48.1
AUR62041984 Chenopodium quinoa HOM05D006489 ORTHO05D007556 6.0e-07 60.1 90 41.1
RhsimUnG0174200 Rhododendron simsii HOM05D000945 ORTHO05D007556 5.1e-06 57.0 77 45.5


User provided reference genes

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