Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g03511 Nelumbo nucifera HOM05D007398 ORTHO05D004912 2.6e-86 322.0 163 100.0
TAR629G1636 Trochodendron aralioides HOM05D007398 ORTHO05D004912 2.3e-42 176.0 126 75.4
TAR626G0532 Trochodendron aralioides HOM05D007398 ORTHO05D004912 5.2e-42 174.9 126 76.2
TAR627G0987 Trochodendron aralioides HOM05D007398 ORTHO05D004912 4.4e-41 171.8 125 76.0
Dinv39711 Davidia involucrata HOM05D007398 ORTHO05D004912 4.2e-36 155.2 122 66.4
Hma1.2p1_0328F.1_g126925 Hydrangea macrophylla HOM05D007398 ORTHO05D004912 7.2e-36 154.5 123 65.0
Hma1.2p1_0328F.1_g126930 Hydrangea macrophylla HOM05D007398 ORTHO05D004912 7.2e-36 154.5 123 65.0
CSS0017183 Camellia sinensis var. sinensis HOM05D007398 ORTHO05D004912 2.8e-32 142.5 123 65.9
TWI75G1275 Tripterygium wilfordii HOM05D007398 ORTHO05D004912 1.9e-28 129.8 124 54.8
Actinidia30523 Actinidia chinensis HOM05D007398 ORTHO05D004912 4.2e-28 128.6 124 62.1
CANSAT64G0797 Cannabis sativa HOM05D007398 ORTHO05D004912 4.7e-27 125.2 123 58.5
Actinidia03605 Actinidia chinensis HOM05D007398 ORTHO05D004912 2.3e-26 122.9 114 61.4
Prupe.3G217200 Prunus persica HOM05D007398 ORTHO05D004912 1.7e-24 116.7 126 57.1
RcHm_v2.0_Chr2g0159281 Rosa chinensis HOM05D007398 ORTHO05D004912 1.7e-24 116.7 124 56.5
Cfa014400 Carpinus fangiana HOM05D007398 ORTHO05D004912 4.9e-24 115.2 131 51.1
Haze_12865 Corylus avellana HOM05D007398 ORTHO05D004912 8.3e-24 114.4 132 50.8
CiPaw.03G160000 Carya illinoinensis HOM05D007398 ORTHO05D004912 2.4e-23 112.8 130 52.3
Atru.chr6.3184 Acer truncatum HOM05D007398 ORTHO05D004912 5.4e-23 111.7 125 51.2
TWI18G0787 Tripterygium wilfordii HOM05D007398 ORTHO05D004912 5.4e-23 111.7 122 52.5
Atru.chr6.3183 Acer truncatum HOM05D007398 ORTHO05D004912 1.2e-22 110.5 125 51.2
Ciclev10017196m.g Citrus clementina HOM05D007398 ORTHO05D004912 2.0e-22 109.8 123 49.6
FAN14G0586 Fragaria x ananassa HOM05D007398 ORTHO05D004912 2.0e-22 109.8 125 52.8
FAN05G1963 Fragaria x ananassa HOM05D007398 ORTHO05D004912 5.9e-22 108.2 125 54.4
Aqoxy1G02145 Aquilegia oxysepala HOM05D007398 ORTHO05D004912 7.8e-22 107.8 127 52.8
FvH4_6g43180 Fragaria vesca HOM05D007398 ORTHO05D004912 1.0e-21 107.5 125 53.6
FAN02G4350 Fragaria x ananassa HOM05D007398 ORTHO05D004912 1.0e-21 107.5 125 54.4
FAN09G1954 Fragaria x ananassa HOM05D007398 ORTHO05D004912 1.0e-21 107.5 125 53.6
MD17G1096900 Malus domestica HOM05D007398 ORTHO05D004912 1.7e-21 106.7 126 53.2
PSO541G0095 Papaver somniferum HOM05D007398 ORTHO05D004912 2.3e-21 106.3 133 52.6
FAN10G4171 Fragaria x ananassa HOM05D007398 ORTHO05D004912 2.9e-21 105.9 125 51.2
Thecc.02G314700 Theobroma cacao HOM05D007398 ORTHO05D004912 6.6e-21 104.8 126 51.6
TPR.G4189 Trifolium pratense HOM05D007398 ORTHO05D004912 8.6e-21 104.4 108 53.7
QL08p033081 Quercus lobata HOM05D007398 ORTHO05D004912 1.9e-20 103.2 133 50.4
Ca_01601_v3 Cicer arietinum L. HOM05D007398 ORTHO05D004912 5.6e-20 101.7 104 55.8
Psat5g264000 Pisum sativum HOM05D007398 ORTHO05D004912 5.6e-20 101.7 108 52.8
Lsat_1_v5_gn_7_92201 Lactuca sativa HOM05D007398 ORTHO05D004912 7.3e-20 101.3 136 45.6
MD09G1108900 Malus domestica HOM05D007398 ORTHO05D004912 7.3e-20 101.3 125 52.0
Duzib251G0280 Durio zibethinus HOM05D007398 ORTHO05D004912 8.0e-19 97.8 126 49.2
Lsat_1_v5_gn_9_106500 Lactuca sativa HOM05D007398 ORTHO05D004912 8.0e-19 97.8 132 46.2
ClCG00G003290 Citrullus lanatus HOM05D007398 ORTHO05D004912 1.4e-18 97.1 127 48.0
ClCG02G001930 Citrullus lanatus HOM05D007398 ORTHO05D004912 1.4e-18 97.1 127 48.0
QL07p015665 Quercus lobata HOM05D007398 ORTHO05D004912 1.8e-18 96.7 139 48.9
Sed0010410 Sechium edule HOM05D007398 ORTHO05D004912 1.8e-18 96.7 127 46.5
Duzib248G0799 Durio zibethinus HOM05D007398 ORTHO05D004912 2.3e-18 96.3 126 47.6
Gohir.A12G157600 Gossypium hirsutum HOM05D007398 ORTHO05D004912 5.2e-18 95.1 126 48.4
Gorai.008G173500 Gossypium raimondii HOM05D007398 ORTHO05D004912 8.9e-18 94.4 126 48.4
Phvul.005G115200 Phaseolus vulgaris HOM05D007398 ORTHO05D004912 8.9e-18 94.4 128 51.6
Gohir.D12G159800 Gossypium hirsutum HOM05D007398 ORTHO05D004912 2.6e-17 92.8 126 48.4
arahy.Tifrunner.gnm1.ann1.TIC55L Arachis hypogaea HOM05D007398 ORTHO05D004912 3.4e-17 92.4 129 48.8
COL.COLO4_27711 Corchorus olitorius HOM05D007398 ORTHO05D004912 4.4e-17 92.0 127 45.7
Rhsim06G0162600 Rhododendron simsii HOM05D007398 ORTHO05D004912 4.4e-17 92.0 124 46.0
VMungo1080G0246 Vigna mungo HOM05D007398 ORTHO05D004912 4.4e-17 92.0 127 51.2
Manes.13G070200 Manihot esculenta HOM05D007398 ORTHO05D004912 5.8e-17 91.7 89 53.9
Sed0017095 Sechium edule HOM05D007398 ORTHO05D004912 9.8e-17 90.9 130 47.7
MELO3C018817.2 Cucumis melo HOM05D007398 ORTHO05D004912 1.7e-16 90.1 127 45.7
ECA236G3422 Erigeron canadensis HOM05D007398 ORTHO05D004912 1.7e-16 90.1 131 45.0
Glyma.13G308800 Glycine max HOM05D007398 ORTHO05D004912 1.7e-16 90.1 127 49.6
Gohir.A04G144600 Gossypium hirsutum HOM05D007398 ORTHO05D004912 2.9e-16 89.4 126 43.7
Medtr2g088320 Medicago truncatula HOM05D007398 ORTHO05D004912 4.9e-16 88.6 100 48.0
MBI02_g21879_MAGBIO Magnolia biondii HOM05D007398 ORTHO05D004912 8.3e-16 87.8 117 46.2
Cpa.g.sc12.298 Carica papaya HOM05D007398 ORTHO05D004912 1.1e-15 87.4 113 45.1
ClCG02G008700 Citrullus lanatus HOM05D007398 ORTHO05D004912 1.4e-15 87.0 124 42.7
CsaV3_7G003580 Cucumis sativus L. HOM05D007398 ORTHO05D004912 1.4e-15 87.0 127 45.7
arahy.Tifrunner.gnm1.ann1.X0QM4L Arachis hypogaea HOM05D007398 ORTHO05D004912 2.4e-15 86.3 129 48.1
Lalb_Chr19g0135871 Lupinus albus HOM05D007398 ORTHO05D004912 5.4e-15 85.1 123 42.3
Gohir.D04G189100 Gossypium hirsutum HOM05D007398 ORTHO05D004912 9.2e-15 84.3 126 42.9
Manes.15G071300 Manihot esculenta HOM05D007398 ORTHO05D004912 2.7e-14 82.8 113 43.4
Gorai.012G184400 Gossypium raimondii HOM05D007398 ORTHO05D004912 6.0e-14 81.6 126 42.1
Eucgr.K00797 Eucalyptus grandis HOM05D007398 ORTHO05D004912 7.8e-14 81.3 128 43.0
HanXRQChr16g0504931 Helianthus annuus HOM05D007398 ORTHO05D004912 7.8e-14 81.3 108 48.1
Cc05_g04620 Coffea canephora HOM05D007398 ORTHO05D004912 1.0e-13 80.9 127 45.7
Glyma.12G193700 Glycine max HOM05D007398 ORTHO05D004912 1.0e-13 80.9 127 46.5
Sed0017131 Sechium edule HOM05D007398 ORTHO05D004912 1.0e-13 80.9 125 42.4
Sed0025347 Sechium edule HOM05D007398 ORTHO05D004912 1.0e-13 80.9 124 41.1
Oeu041920.1 Olea europaea HOM05D007398 ORTHO05D004912 1.7e-13 80.1 134 44.8
HanXRQChr03g0069481 Helianthus annuus HOM05D007398 ORTHO05D004912 1.5e-12 77.0 127 43.3
Manes.03G130000 Manihot esculenta HOM05D007398 ORTHO05D004912 1.9e-12 76.6 110 42.7
CDE01G0169 Ceratophyllum demersum HOM05D001264 ORTHO05D001167 9.5e-12 74.3 108 50.0
Haze_06802 Corylus avellana HOM05D061810 ORTHO05D004912 1.2e-11 73.9 110 43.6
Lalb_Chr24g0393181 Lupinus albus HOM05D007398 ORTHO05D004912 1.2e-11 73.9 118 44.9
QL05p073125 Quercus lobata HOM05D007398 ORTHO05D004912 2.8e-11 72.8 101 46.5
THA.LOC104813425 Tarenaya hassleriana HOM05D009587 ORTHO05D004912 2.8e-11 72.8 107 43.9
Migut.M01320 Erythranthe guttata HOM05D011575 ORTHO05D004912 8.0e-11 71.2 104 40.4
Migut.H01572 Erythranthe guttata HOM05D011575 ORTHO05D004912 1.1e-10 70.9 107 43.0
Thhalv10015018m.g Eutrema salsugineum HOM05D009587 ORTHO05D004912 1.4e-10 70.5 113 41.6
AT5G54970 Arabidopsis thaliana HOM05D009587 ORTHO05D004912 1.8e-10 70.1 124 37.9
THA.LOC104817668 Tarenaya hassleriana HOM05D009587 ORTHO05D004912 2.3e-10 69.7 109 44.0
Lj4g0016348 Lotus japonicus HOM05D007398 ORTHO05D004912 3.1e-10 69.3 96 40.6
QL05p073115 Quercus lobata HOM05D007398 ORTHO05D004912 4.0e-10 68.9 100 45.0
Carub.0008s1526 Capsella rubella HOM05D009587 ORTHO05D004912 5.2e-10 68.6 126 37.3
AL8G30440 Arabidopsis lyrata HOM05D009587 ORTHO05D004912 6.8e-10 68.2 119 37.0
Oeu002741.1 Olea europaea HOM05D011575 ORTHO05D004912 6.8e-10 68.2 105 39.0
MSTRG.7209 Avicennia marina HOM05D011575 ORTHO05D004912 1.5e-09 67.0 104 40.4
Potri.006G052300 Populus trichocarpa HOM05D007398 ORTHO05D004912 1.5e-09 67.0 114 41.2
CARHR268310 Cardamine hirsuta HOM05D009587 ORTHO05D004912 2.6e-09 66.2 113 36.3
Gohir.A01G080300 Gossypium hirsutum HOM05D007398 ORTHO05D004912 2.6e-09 66.2 113 43.4
BcaC01g06332 Brassica carinata HOM05D009587 ORTHO05D004912 3.4e-09 65.9 109 43.1
Gohir.D01G067500 Gossypium hirsutum HOM05D007398 ORTHO05D004912 3.4e-09 65.9 114 42.1
Gorai.002G089400 Gossypium raimondii HOM05D007398 ORTHO05D004912 3.4e-09 65.9 114 42.1
PGR083G1220 Punica granatum HOM05D007398 ORTHO05D004912 4.4e-09 65.5 112 43.8
Sp6g16920 Schrenkiella parvula HOM05D009587 ORTHO05D004912 4.4e-09 65.5 120 37.5
ECA240G1365 Erigeron canadensis HOM05D007398 ORTHO05D004912 7.5e-09 64.7 104 44.2
BcaB01g04338 Brassica carinata HOM05D009587 ORTHO05D004912 9.8e-09 64.3 113 37.2
BraA03t10733Z Brassica rapa HOM05D009587 ORTHO05D004912 9.8e-09 64.3 115 38.3
PGSC0003DMG400016452 Solanum tuberosum HOM05D011575 ORTHO05D004912 9.8e-09 64.3 117 40.2
Aa31LG3G10880 Aethionema arabicum HOM05D009587 ORTHO05D004912 1.3e-08 63.9 124 33.9
SGA_v2.0_scaffold4G01914 Striga asiatica HOM05D011575 ORTHO05D004912 1.7e-08 63.5 105 39.0
Duzib213G1052 Durio zibethinus HOM05D007398 ORTHO05D004912 2.2e-08 63.2 103 41.7
SalBow8G3401 Salvia bowleyana HOM05D011575 ORTHO05D004912 2.2e-08 63.2 90 41.1
RcHm_v2.0_Chr5g0002951 Rosa chinensis HOM05D011727 ORTHO05D004912 3.7e-08 62.4 110 42.7
Thecc.07G035100 Theobroma cacao HOM05D007398 ORTHO05D004912 3.7e-08 62.4 115 39.1
SGA_v2.0_scaffold7G03838 Striga asiatica HOM05D011575 ORTHO05D004912 4.9e-08 62.0 95 41.1
Sc16g0005970 Simmondsia chinensis HOM05D007398 ORTHO05D004912 8.3e-08 61.2 119 40.3
C03p16740 Brassica napus HOM05D009587 ORTHO05D004912 2.4e-07 59.7 117 37.6
ClCG03G014620 Citrullus lanatus HOM05D032147 ORTHO05D034646 3.2e-07 59.3 116 38.8
Sopen02g025250 Solanum pennellii HOM05D011575 ORTHO05D004912 3.2e-07 59.3 108 39.8
A03p14360 Brassica napus HOM05D009587 ORTHO05D004912 4.1e-07 58.9 114 36.8
BolC3t14094H Brassica oleracea HOM05D009587 ORTHO05D004912 4.1e-07 58.9 117 36.8
Carub.0007s1391 Capsella rubella HOM05D009587 ORTHO05D004912 4.1e-07 58.9 98 37.8
AL7G25880 Arabidopsis lyrata HOM05D009587 ORTHO05D004912 5.4e-07 58.5 106 37.7
FvH4_3g02050 Fragaria vesca HOM05D011727 ORTHO05D004912 5.4e-07 58.5 99 44.4
SEGI_01426 Sequoiadendron giganteum HOM05D007398 ORTHO05D004912 7.1e-07 58.2 132 37.1
FAN21G2105 Fragaria x ananassa HOM05D011727 ORTHO05D004912 9.2e-07 57.8 98 40.8
CARHR234560 Cardamine hirsuta HOM05D009587 ORTHO05D004912 1.6e-06 57.0 108 38.9
ATR0794G061 Amborella trichopoda HOM05D007398 ORTHO05D004912 2.1e-06 56.6 128 34.4
AUR62020433 Chenopodium quinoa HOM05D007398 ORTHO05D004912 2.1e-06 56.6 117 40.2
unitig_744.g24521 Utricularia gibba HOM05D011575 ORTHO05D004912 2.1e-06 56.6 94 37.2
FAN25G2989 Fragaria x ananassa HOM05D011727 ORTHO05D004912 2.7e-06 56.2 98 38.8
Solyc02g080550.1 Solanum lycopersicum HOM05D011575 ORTHO05D004912 2.7e-06 56.2 98 35.7
BcaB03g12516 Brassica carinata HOM05D009587 ORTHO05D004912 3.5e-06 55.8 108 32.4
BcaC07g38259 Brassica carinata HOM05D009587 ORTHO05D004912 3.5e-06 55.8 108 38.0
C08p10050 Brassica napus HOM05D009587 ORTHO05D004912 4.6e-06 55.5 124 34.7
BolC8t48684H Brassica oleracea HOM05D009587 ORTHO05D004912 4.6e-06 55.5 124 34.7
PGSC0003DMG400016451 Solanum tuberosum HOM05D011575 ORTHO05D004912 4.6e-06 55.5 102 41.2
AT4G26960 Arabidopsis thaliana HOM05D009587 ORTHO05D004912 6.0e-06 55.1 120 31.7


User provided reference genes

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