Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g03456 Nelumbo nucifera HOM05D004677 ORTHO05D005746 2.8e-100 368.6 187 100.0
TAR629G2143 Trochodendron aralioides HOM05D004677 ORTHO05D005746 2.8e-68 262.3 163 82.8
Dinv08753 Davidia involucrata HOM05D004677 ORTHO05D005746 1.0e-65 253.8 158 81.6
Manes.13G068200 Manihot esculenta HOM05D004677 ORTHO05D005746 4.2e-64 248.4 164 76.2
Potri.014G155200 Populus trichocarpa HOM05D004677 ORTHO05D005746 7.2e-64 247.7 157 79.6
FvH4_6g42850 Fragaria vesca HOM05D004677 ORTHO05D005746 2.7e-63 245.7 168 74.4
FAN02G0422 Fragaria x ananassa HOM05D004677 ORTHO05D005746 2.7e-63 245.7 168 74.4
FAN05G4912 Fragaria x ananassa HOM05D004677 ORTHO05D005746 2.7e-63 245.7 168 74.4
FAN09G3259 Fragaria x ananassa HOM05D004677 ORTHO05D005746 6.1e-63 244.6 168 73.2
QL08p032142 Quercus lobata HOM05D004677 ORTHO05D005746 6.1e-63 244.6 153 82.4
TWI18G0105 Tripterygium wilfordii HOM05D004677 ORTHO05D005746 1.4e-62 243.4 154 79.2
FAN14G2731 Fragaria x ananassa HOM05D004677 ORTHO05D005746 1.8e-62 243.0 168 73.2
Atru.chr6.3221 Acer truncatum HOM05D004677 ORTHO05D005746 3.0e-62 242.3 153 79.7
COL.COLO4_20015 Corchorus olitorius HOM05D004677 ORTHO05D005746 3.0e-62 242.3 154 80.5
HanXRQChr03g0073261 Helianthus annuus HOM05D004677 ORTHO05D005746 3.0e-62 242.3 165 74.5
Cfa014357 Carpinus fangiana HOM05D004677 ORTHO05D005746 5.2e-62 241.5 157 79.0
CiPaw.03G158200 Carya illinoinensis HOM05D004677 ORTHO05D005746 8.8e-62 240.7 158 78.5
Gohir.D07G176800 Gossypium hirsutum HOM05D004677 ORTHO05D005746 2.0e-61 239.6 153 80.4
Gorai.001G197600 Gossypium raimondii HOM05D004677 ORTHO05D005746 2.0e-61 239.6 153 80.4
Lsat_1_v5_gn_9_106900 Lactuca sativa HOM05D004677 ORTHO05D005746 2.0e-61 239.6 139 83.5
vmacro12188 Vaccinium macrocarpon HOM05D004677 ORTHO05D005746 2.0e-61 239.6 145 82.8
Thecc.01G176700 Theobroma cacao HOM05D004677 ORTHO05D005746 2.6e-61 239.2 161 77.6
Actinidia09726 Actinidia chinensis HOM05D004677 ORTHO05D005746 3.3e-61 238.8 167 76.0
Ciclev10016206m.g Citrus clementina HOM05D004677 ORTHO05D005746 3.3e-61 238.8 136 83.1
Sc12g0002230 Simmondsia chinensis HOM05D004677 ORTHO05D005746 1.3e-60 236.9 166 74.1
arahy.Tifrunner.gnm1.ann1.5LK61T Arachis hypogaea HOM05D004677 ORTHO05D005746 1.7e-60 236.5 165 73.9
arahy.Tifrunner.gnm1.ann1.34K6GT Arachis hypogaea HOM05D004677 ORTHO05D005746 2.2e-60 236.1 165 73.9
Duzib133G0523 Durio zibethinus HOM05D004677 ORTHO05D005746 2.2e-60 236.1 158 77.2
MBI10_g41369_MAGBIO Magnolia biondii HOM05D004677 ORTHO05D005746 2.2e-60 236.1 166 71.7
MBI10_g43118_MAGBIO Magnolia biondii HOM05D004677 ORTHO05D005746 2.2e-60 236.1 166 71.7
Rhsim06G0164500 Rhododendron simsii HOM05D004677 ORTHO05D005746 2.8e-60 235.7 156 75.0
EL10Ac9g22065 Beta vulgaris HOM05D004677 ORTHO05D005746 3.7e-60 235.3 167 73.7
Prupe.3G214600 Prunus persica HOM05D004677 ORTHO05D005746 3.7e-60 235.3 160 74.4
Solyc05g043430.4 Solanum lycopersicum HOM05D004677 ORTHO05D005746 4.8e-60 235.0 135 83.0
Sopen05g026690 Solanum pennellii HOM05D004677 ORTHO05D005746 4.8e-60 235.0 135 83.0
CSS0008737 Camellia sinensis var. sinensis HOM05D004677 ORTHO05D005746 6.3e-60 234.6 168 73.2
RcHm_v2.0_Chr2g0158791 Rosa chinensis HOM05D004677 ORTHO05D005746 6.3e-60 234.6 173 69.9
Nitab4.5_0004702g0010 Nicotiana tabacum HOM05D004677 ORTHO05D005746 8.2e-60 234.2 163 73.0
THA.LOC104800998 Tarenaya hassleriana HOM05D004677 ORTHO05D005746 1.1e-59 233.8 158 75.3
Aqoxy1G03069 Aquilegia oxysepala HOM05D004677 ORTHO05D005746 1.8e-59 233.0 167 71.9
Carub.0004s1386 Capsella rubella HOM05D004677 ORTHO05D005746 1.8e-59 233.0 168 71.4
Glyma.12G192200 Glycine max HOM05D004677 ORTHO05D005746 1.8e-59 233.0 130 85.4
Nitab4.5_0000006g0310 Nicotiana tabacum HOM05D004677 ORTHO05D005746 1.8e-59 233.0 156 75.6
Hund06461 Selenicereus undatus HOM05D004677 ORTHO05D005746 1.8e-59 233.0 126 87.3
Sed0004392 Sechium edule HOM05D004677 ORTHO05D005746 2.4e-59 232.6 142 80.3
Hma1.2p1_0895F.1_g233790 Hydrangea macrophylla HOM05D004677 ORTHO05D005746 4.1e-59 231.9 149 77.2
BcaC02g07915 Brassica carinata HOM05D004677 ORTHO05D005746 5.3e-59 231.5 157 76.4
C04p62010 Brassica napus HOM05D004677 ORTHO05D005746 5.3e-59 231.5 157 76.4
CANSAT64G2258 Cannabis sativa HOM05D004677 ORTHO05D005746 5.3e-59 231.5 138 82.6
AT2G32520 Arabidopsis thaliana HOM05D004677 ORTHO05D005746 7.0e-59 231.1 143 78.3
BolC4t27678H Brassica oleracea HOM05D004677 ORTHO05D005746 9.1e-59 230.7 157 75.8
BraA04t18010Z Brassica rapa HOM05D004677 ORTHO05D005746 9.1e-59 230.7 157 75.8
PGR142G1137 Punica granatum HOM05D004677 ORTHO05D005746 9.1e-59 230.7 170 73.5
VMungo1080G1602 Vigna mungo HOM05D004677 ORTHO05D005746 9.1e-59 230.7 130 84.6
Cc05_g03990 Coffea canephora HOM05D004677 ORTHO05D005746 1.2e-58 230.3 144 80.6
AUR62027103 Chenopodium quinoa HOM05D004677 ORTHO05D005746 1.6e-58 229.9 142 78.2
TWI36G1343 Tripterygium wilfordii HOM05D004677 ORTHO05D005746 1.6e-58 229.9 130 83.1
BraA05t20266Z Brassica rapa HOM05D004677 ORTHO05D005746 2.0e-58 229.6 168 72.6
Thhalv10017055m.g Eutrema salsugineum HOM05D004677 ORTHO05D005746 2.0e-58 229.6 165 69.7
Lalb_Chr01g0023241 Lupinus albus HOM05D004677 ORTHO05D005746 2.0e-58 229.6 126 87.3
AL4G27910 Arabidopsis lyrata HOM05D004677 ORTHO05D005746 2.6e-58 229.2 168 69.6
CsaV3_7G003450 Cucumis sativus L. HOM05D004677 ORTHO05D005746 2.6e-58 229.2 161 72.7
Migut.M00416 Erythranthe guttata HOM05D004677 ORTHO05D005746 2.6e-58 229.2 162 71.6
Peaxi162Scf00462g00089 Petunia axillaris HOM05D004677 ORTHO05D005746 2.6e-58 229.2 136 79.4
CARHR126350 Cardamine hirsuta HOM05D004677 ORTHO05D005746 3.5e-58 228.8 126 84.1
Phvul.005G116100 Phaseolus vulgaris HOM05D004677 ORTHO05D005746 4.5e-58 228.4 130 83.1
BcaB06g28600 Brassica carinata HOM05D004677 ORTHO05D005746 5.9e-58 228.0 126 84.1
A04p24990 Brassica napus HOM05D004677 ORTHO05D005746 5.9e-58 228.0 126 84.9
AUR62012879 Chenopodium quinoa HOM05D004677 ORTHO05D005746 5.9e-58 228.0 142 78.2
MELO3C018827.2 Cucumis melo HOM05D004677 ORTHO05D005746 5.9e-58 228.0 141 80.9
Oeu027244.1 Olea europaea HOM05D004677 ORTHO05D005746 5.9e-58 228.0 127 82.7
PSO675G6993 Papaver somniferum HOM05D004677 ORTHO05D005746 7.7e-58 227.6 130 81.5
A05p13260 Brassica napus HOM05D004677 ORTHO05D005746 1.3e-57 226.9 155 74.2
Eucgr.K00785 Eucalyptus grandis HOM05D004677 ORTHO05D005746 1.3e-57 226.9 120 88.3
Aa31LG5G4780 Aethionema arabicum HOM05D004677 ORTHO05D005746 1.7e-57 226.5 167 70.1
BcaC02g11313 Brassica carinata HOM05D004677 ORTHO05D005746 1.7e-57 226.5 168 72.0
MSTRG.14847 Avicennia marina HOM05D004677 ORTHO05D005746 2.9e-57 225.7 136 77.9
ClCG02G002040 Citrullus lanatus HOM05D004677 ORTHO05D005746 2.9e-57 225.7 148 76.4
Glyma.06G307800 Glycine max HOM05D004677 ORTHO05D005746 2.9e-57 225.7 137 79.6
C04p17150 Brassica napus HOM05D004677 ORTHO05D005746 3.8e-57 225.3 169 69.8
BolC4t23265H Brassica oleracea HOM05D004677 ORTHO05D005746 3.8e-57 225.3 169 69.8
Lalb_Chr01g0005771 Lupinus albus HOM05D004677 ORTHO05D005746 3.8e-57 225.3 136 80.9
MBI10_g35587_MAGBIO Magnolia biondii HOM05D004677 ORTHO05D005746 5.0e-57 224.9 130 80.0
SEGI_04984 Sequoiadendron giganteum HOM05D004677 ORTHO05D005746 5.0e-57 224.9 162 69.1
ATR0585G016 Amborella trichopoda HOM05D004677 ORTHO05D005746 6.5e-57 224.6 163 69.9
DCAR_019755 Daucus carota HOM05D004677 ORTHO05D005746 1.1e-56 223.8 125 84.0
SGA_v2.0_scaffold34G13862 Striga asiatica HOM05D004677 ORTHO05D005746 2.5e-56 222.6 168 69.0
HanXRQChr15g0490311 Helianthus annuus HOM05D004677 ORTHO05D005746 3.2e-56 222.2 126 84.1
CDE02G1429 Ceratophyllum demersum HOM05D004677 ORTHO05D005746 4.2e-56 221.9 126 83.3
Phvul.011G101800 Phaseolus vulgaris HOM05D004677 ORTHO05D005746 4.2e-56 221.9 144 77.8
MBI10_g41368_MAGBIO Magnolia biondii HOM05D004677 ORTHO05D005746 5.5e-56 221.5 130 78.5
Ca_19496_v3 Cicer arietinum L. HOM05D004677 ORTHO05D005746 7.2e-56 221.1 162 72.8
Psat7g201040 Pisum sativum HOM05D004677 ORTHO05D005746 7.2e-56 221.1 137 80.3
VMungo1127G1216 Vigna mungo HOM05D004677 ORTHO05D005746 9.4e-56 220.7 138 79.0
Hund00385 Selenicereus undatus HOM05D004677 ORTHO05D005746 1.6e-55 219.9 149 73.8
Sp4g14870 Schrenkiella parvula HOM05D004677 ORTHO05D005746 2.7e-55 219.2 126 81.0
Lj3g0003247 Lotus japonicus HOM05D004677 ORTHO05D005746 3.6e-55 218.8 126 80.2
BcaB02g10464 Brassica carinata HOM05D004677 ORTHO05D005746 4.7e-55 218.4 126 82.5
TPR.G4610 Trifolium pratense HOM05D004677 ORTHO05D005746 4.7e-55 218.4 137 79.6
Zm00001eb162930 Zea mays HOM05D004677 ORTHO05D005746 8.0e-55 217.6 151 70.9
Medtr4g049830 Medicago truncatula HOM05D004677 ORTHO05D005746 1.0e-54 217.2 137 78.8
SHI10364 Sapria himalayana HOM05D004677 ORTHO05D005746 1.4e-54 216.9 170 68.2
Lj3g0012150 Lotus japonicus HOM05D004677 ORTHO05D005746 5.2e-54 214.9 127 78.0
Sed0023389 Sechium edule HOM05D004677 ORTHO05D005746 8.8e-54 214.2 130 78.5
Os01g0531500 Oryza sativa ssp. japonica HOM05D004677 ORTHO05D005746 5.7e-53 211.5 156 67.9
Sabra14G0117500 Salix brachista HOM05D004677 ORTHO05D005746 5.7e-53 211.5 143 74.1
Lj1A770G43 Lonicera japonica HOM05D004677 ORTHO05D005746 7.5e-53 211.1 110 90.9
Haze_12810 Corylus avellana HOM05D004677 ORTHO05D005746 9.8e-53 210.7 112 87.5
ECA240G0706 Erigeron canadensis HOM05D004677 ORTHO05D005746 2.8e-52 209.1 123 79.7
HPP92_020158 Vanilla planifolia HOM05D004677 ORTHO05D005746 8.3e-52 207.6 137 70.8
SGA_v2.0_scaffold445G51724 Striga asiatica HOM05D004677 ORTHO05D005746 1.8e-51 206.5 179 62.0
Gohir.A07G174750 Gossypium hirsutum HOM05D004677 ORTHO05D005746 2.4e-51 206.1 148 70.3
Oeu036746.3 Olea europaea HOM05D004677 ORTHO05D005746 5.4e-51 204.9 125 78.4
Cpa.g.sc572.2 Carica papaya HOM05D004677 ORTHO05D005746 9.1e-51 204.1 161 65.8
SGA_v2.0_scaffold186G40184 Striga asiatica HOM05D004677 ORTHO05D005746 3.5e-50 202.2 152 67.1
Mapoly0043s0053 Marchantia polymorpha HOM05D004677 ORTHO05D005746 1.9e-48 196.4 145 69.0
Lsat_1_v5_gn_9_106880 Lactuca sativa HOM05D004677 ORTHO05D005746 1.2e-47 193.7 126 72.2
SMO351G0384 Selaginella moellendorffii HOM05D004677 ORTHO05D005746 1.6e-47 193.4 129 70.5
CDE08G0164 Ceratophyllum demersum HOM05D004677 ORTHO05D005746 5.7e-45 184.9 105 81.0
Pp3c16_5740 Physcomitrium patens HOM05D004677 ORTHO05D005746 1.8e-43 179.9 125 69.6
AagrBONN_evm.TU.Sc2ySwM_117.68 Anthoceros agrestis HOM05D004677 ORTHO05D005746 7.0e-43 177.9 167 56.9
CBR_g23740 Chara braunii HOM05D004677 ORTHO05D005746 2.7e-42 176.0 125 67.2
HPP92_020157 Vanilla planifolia HOM05D004677 ORTHO05D005746 1.2e-37 160.6 101 71.3
arahy.Tifrunner.gnm1.ann1.4D0QE2 Arachis hypogaea HOM05D004677 ORTHO05D005746 5.4e-35 151.8 144 58.3
Lj5g0020236 Lotus japonicus HOM05D004677 ORTHO05D005746 2.7e-34 149.4 164 52.4
SGA_v2.0_scaffold228G43250 Striga asiatica HOM05D004677 ORTHO05D005746 4.3e-32 142.1 87 72.4
Lj2g0012873 Lotus japonicus HOM05D004677 ORTHO05D005746 1.2e-31 140.6 136 52.9
Lj3g0025926 Lotus japonicus HOM05D004677 ORTHO05D005746 2.8e-31 139.4 77 85.7
Nn1g04350 Nelumbo nucifera HOM05D004677 ORTHO05D005746 4.7e-31 138.7 74 90.5
arahy.Tifrunner.gnm1.ann1.IJK42W Arachis hypogaea HOM05D004677 ORTHO05D005746 1.8e-30 136.7 139 54.7
Nn3g18971 Nelumbo nucifera HOM05D004677 ORTHO05D005746 6.8e-30 134.8 72 91.7
arahy.Tifrunner.gnm1.ann1.65RE86 Arachis hypogaea HOM05D004677 ORTHO05D005746 8.9e-30 134.4 72 80.6
Lj2g0026590 Lotus japonicus HOM05D004677 ORTHO05D005746 2.0e-26 123.2 125 54.4
MD17G1099200 Malus domestica HOM05D004677 ORTHO05D005746 2.7e-26 122.9 110 58.2
TAR627G1178 Trochodendron aralioides HOM05D004677 ORTHO05D005746 3.5e-26 122.5 63 93.7
MCO13G274 Micromonas commoda HOM05D004677 ORTHO05D005746 6.0e-26 121.7 110 47.3
MD09G1072400 Malus domestica HOM05D004677 ORTHO05D005746 1.1e-24 117.5 111 55.9
Cre06.g294000 Chlamydomonas reinhardtii HOM05D004677 ORTHO05D005746 1.9e-24 116.7 104 48.1
PRCOL_00005478 Prasinoderma coloniale HOM05D004677 ORTHO05D005746 6.8e-22 108.2 109 46.8
unitig_0.g733 Utricularia gibba HOM05D004677 ORTHO05D005746 6.8e-22 108.2 58 87.9
DCAR_013148 Daucus carota HOM05D004677 ORTHO05D005746 1.5e-21 107.1 85 61.2
Lj3g0001260 Lotus japonicus HOM05D004677 ORTHO05D005746 2.6e-21 106.3 90 56.7
AagrBONN_evm.TU.Sc2ySwM_117.4165 Anthoceros agrestis HOM05D004677 ORTHO05D005746 1.6e-15 87.0 86 54.7
arahy.Tifrunner.gnm1.ann1.B7RHXH Arachis hypogaea HOM05D004677 ORTHO05D005746 2.0e-13 80.1 125 45.6
Cre06.g258600 Chlamydomonas reinhardtii HOM05D004677 ORTHO05D005746 2.6e-13 79.7 133 30.8
FAN09G2974 Fragaria x ananassa HOM05D004677 ORTHO05D005746 1.1e-11 74.3 48 72.9
arahy.Tifrunner.gnm1.ann1.G1NRGV Arachis hypogaea HOM05D004677 ORTHO05D005746 8.6e-09 64.7 72 48.6
arahy.Tifrunner.gnm1.ann1.LRB7BH Arachis hypogaea HOM05D004677 ORTHO05D005746 2.8e-07 59.7 70 48.6
AagrBONN_evm.TU.Sc2ySwM_117.58 Anthoceros agrestis HOM05D004677 ORTHO05D074401 2.4e-06 56.6 70 42.9
arahy.Tifrunner.gnm1.ann1.WARH89 Arachis hypogaea HOM05D004677 ORTHO05D005746 2.4e-06 56.6 28 89.3
Ciclev10030258m.g Citrus clementina HOM05D004677 ORTHO05D005746 6.8e-06 55.1 51 58.8


User provided reference genes

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