Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g03425 Nelumbo nucifera HOM05D007725 ORTHO05D009774 2.3e-162 576.2 484 100.0
Nn1g03245 Nelumbo nucifera HOM05D007725 ORTHO05D009774 2.3e-114 416.8 453 82.8
TAR624G0507 Trochodendron aralioides HOM05D007725 ORTHO05D009774 6.8e-74 282.3 456 73.2
Nn1g07446 Nelumbo nucifera HOM05D007725 ORTHO05D009774 4.1e-71 273.1 453 58.3
Dinv10315 Davidia involucrata HOM05D007725 ORTHO05D009774 7.1e-71 272.3 446 72.9
Cfa020227 Carpinus fangiana HOM05D007725 ORTHO05D009774 1.9e-68 264.2 437 70.5
Haze_09790 Corylus avellana HOM05D007725 ORTHO05D009774 3.6e-67 260.0 438 73.1
COL.COLO4_09791 Corchorus olitorius HOM05D007725 ORTHO05D009774 1.9e-63 247.7 438 62.1
Lj1P886T16 Lonicera japonica HOM05D007725 ORTHO05D009774 1.9e-63 247.7 463 62.9
Nitab4.5_0002517g0030 Nicotiana tabacum HOM05D007725 ORTHO05D009774 1.2e-62 245.0 454 57.5
Hma1.2p1_2796F.1_g328670 Hydrangea macrophylla HOM05D007725 ORTHO05D009774 1.6e-62 244.6 448 69.2
Glyma.08G326100 Glycine max HOM05D007725 ORTHO05D009774 1.0e-61 241.9 453 61.4
CSS0027076 Camellia sinensis var. sinensis HOM05D007725 ORTHO05D009774 1.7e-61 241.1 449 55.5
ClCG09G021110 Citrullus lanatus HOM05D007725 ORTHO05D009774 3.9e-61 240.0 452 63.3
Peaxi162Scf00955g00014 Petunia axillaris HOM05D007725 ORTHO05D009774 3.9e-61 240.0 468 56.0
VMungo0540G1375 Vigna mungo HOM05D007725 ORTHO05D009774 6.6e-61 239.2 452 60.2
PSO478G1598 Papaver somniferum HOM05D007725 ORTHO05D009774 2.5e-60 237.3 464 62.9
Duzib170G0716 Durio zibethinus HOM05D007725 ORTHO05D009774 9.6e-60 235.3 449 54.3
PGSC0003DMG402029798 Solanum tuberosum HOM05D007725 ORTHO05D009774 6.2e-59 232.6 473 55.6
Sopen12g007550 Solanum pennellii HOM05D007725 ORTHO05D009774 3.1e-58 230.3 473 55.0
GSVIVG01037783001 Vitis vinifera HOM05D007725 ORTHO05D009774 2.6e-57 227.3 338 61.8
Solyc12g015650.3 Solanum lycopersicum HOM05D007725 ORTHO05D009774 9.9e-57 225.3 473 54.5
GSVIVG01037784001 Vitis vinifera HOM05D007725 ORTHO05D009774 1.3e-56 224.9 452 59.3
Gohir.A11G277300 Gossypium hirsutum HOM05D007725 ORTHO05D009774 2.2e-56 224.2 455 47.5
Nitab4.5_0000163g0300 Nicotiana tabacum HOM05D007725 ORTHO05D009774 2.2e-56 224.2 453 61.8
Ciclev10008214m.g Citrus clementina HOM05D007725 ORTHO05D009774 2.9e-56 223.8 444 64.0
MELO3C024908.2 Cucumis melo HOM05D007725 ORTHO05D009774 4.9e-56 223.0 435 61.1
Cc05_g14730 Coffea canephora HOM05D007725 ORTHO05D009774 8.4e-56 222.2 444 63.5
Cpa.g.sc12.189 Carica papaya HOM05D007725 ORTHO05D009774 1.4e-55 221.5 449 65.5
Gorai.007G311000 Gossypium raimondii HOM05D007725 ORTHO05D009774 9.3e-55 218.8 455 44.0
Manes.03G138100 Manihot esculenta HOM05D007725 ORTHO05D009774 3.9e-53 213.4 449 67.0
CsaV3_7G018510 Cucumis sativus L. HOM05D007725 ORTHO05D009774 9.6e-52 208.8 442 62.2
ATR1149G149 Amborella trichopoda HOM05D007725 ORTHO05D009774 8.1e-51 205.7 438 67.6
Gohir.D11G287700 Gossypium hirsutum HOM05D007725 ORTHO05D009774 1.2e-49 201.8 445 40.9
Medtr3g056580 Medicago truncatula HOM05D007725 ORTHO05D009774 1.5e-49 201.4 440 43.6
MSTRG.15782 Avicennia marina HOM05D007725 ORTHO05D009774 2.0e-49 201.1 436 59.2
DCAR_022605 Daucus carota HOM05D007725 ORTHO05D009774 2.6e-49 200.7 449 46.1
arahy.Tifrunner.gnm1.ann1.TWJV4J Arachis hypogaea HOM05D007725 ORTHO05D009774 3.8e-48 196.8 447 57.5
QL08p005480 Quercus lobata HOM05D007725 ORTHO05D009774 1.1e-47 195.3 438 61.2
Sed0002917 Sechium edule HOM05D007725 ORTHO05D009774 1.1e-47 195.3 448 57.8
HanXRQChr11g0333971 Helianthus annuus HOM05D007725 ORTHO05D009774 2.4e-47 194.1 341 57.5
arahy.Tifrunner.gnm1.ann1.LCTM2T Arachis hypogaea HOM05D007725 ORTHO05D009774 5.4e-47 193.0 447 57.9
SEGI_22467 Sequoiadendron giganteum HOM05D007725 ORTHO05D009774 7.9e-46 189.1 442 58.6
Ca_26464_v3 Cicer arietinum L. HOM05D007725 ORTHO05D009774 1.3e-45 188.3 450 49.3
Migut.M01753 Erythranthe guttata HOM05D007725 ORTHO05D009774 1.8e-45 188.0 461 56.2
AUR62040655 Chenopodium quinoa HOM05D007725 ORTHO05D009774 1.1e-44 185.3 338 63.6
AUR62017062 Chenopodium quinoa HOM05D007725 ORTHO05D009774 3.3e-44 183.7 338 63.0
arahy.Tifrunner.gnm1.ann1.Q8DMES Arachis hypogaea HOM05D007725 ORTHO05D009774 4.3e-44 183.3 447 58.4
AL3G33870 Arabidopsis lyrata HOM05D007725 ORTHO05D009774 1.6e-43 181.4 444 57.2
CARHR095760 Cardamine hirsuta HOM05D007725 ORTHO05D009774 1.6e-43 181.4 445 58.2
AT3G20170 Arabidopsis thaliana HOM05D007725 ORTHO05D009774 2.8e-43 180.6 443 58.2
Psat5g175640 Pisum sativum HOM05D007725 ORTHO05D009774 2.8e-43 180.6 457 57.8
Aa31LG8G7000 Aethionema arabicum HOM05D007725 ORTHO05D009774 1.4e-42 178.3 446 58.7
C03p50970 Brassica napus HOM05D007725 ORTHO05D009774 1.2e-41 175.3 453 55.4
BolC3t17381H Brassica oleracea HOM05D007725 ORTHO05D009774 1.2e-41 175.3 453 55.6
Sp3g18200 Schrenkiella parvula HOM05D007725 ORTHO05D009774 1.2e-41 175.3 443 57.1
EL10Ac4g07611 Beta vulgaris HOM05D007725 ORTHO05D009774 3.4e-41 173.7 338 55.3
A03p41610 Brassica napus HOM05D007725 ORTHO05D009774 7.6e-41 172.6 443 56.7
BraA03t13314Z Brassica rapa HOM05D007725 ORTHO05D009774 7.6e-41 172.6 443 56.7
BcaB04g19094 Brassica carinata HOM05D007725 ORTHO05D009774 4.9e-40 169.9 444 58.3
Carub.0003s2010 Capsella rubella HOM05D007725 ORTHO05D009774 4.9e-40 169.9 444 57.4
Oeu005490.1 Olea europaea HOM05D007725 ORTHO05D009774 4.2e-39 166.8 185 48.1
Thhalv10020642m.g Eutrema salsugineum HOM05D007725 ORTHO05D009774 1.2e-38 165.2 458 56.1
SalBow8G2031 Salvia bowleyana HOM05D007725 ORTHO05D009774 1.0e-37 162.2 411 60.8
TPR.G1953 Trifolium pratense HOM05D007725 ORTHO05D009774 3.0e-37 160.6 453 30.2
PGR031G2940 Punica granatum HOM05D007725 ORTHO05D009774 9.6e-36 155.6 359 50.4
A05p28800 Brassica napus HOM05D007725 ORTHO05D009774 1.3e-35 155.2 442 54.3
BolC5t33143H Brassica oleracea HOM05D007725 ORTHO05D009774 2.8e-35 154.1 445 54.4
C05p44210 Brassica napus HOM05D007725 ORTHO05D009774 3.7e-35 153.7 445 54.4
Thecc.07G022000 Theobroma cacao HOM05D007725 ORTHO05D009774 2.4e-34 151.0 173 44.5
Phvul.006G053700 Phaseolus vulgaris HOM05D007725 ORTHO05D009774 3.1e-34 150.6 355 63.7
SGA_v2.0_scaffold168G38532 Striga asiatica HOM05D007725 ORTHO05D009774 5.3e-34 149.8 338 32.5
Lj6g0016094 Lotus japonicus HOM05D007725 ORTHO05D009774 1.0e-29 135.6 458 51.1
Lj6g0003901 Lotus japonicus HOM05D007725 ORTHO05D009774 1.8e-29 134.8 344 48.8
Lj2g0017250 Lotus japonicus HOM05D007725 ORTHO05D009774 1.9e-28 131.3 342 30.4
COL.COLO4_09793 Corchorus olitorius HOM05D007725 ORTHO05D009774 3.1e-26 124.0 174 44.3
Lj6g0024671 Lotus japonicus HOM05D007725 ORTHO05D009774 1.5e-25 121.7 453 50.1
HPP92_006089 Vanilla planifolia HOM05D007725 ORTHO05D009774 5.5e-23 113.2 343 52.8
BraA05t21757Z Brassica rapa HOM05D007725 ORTHO05D009774 1.2e-22 112.1 176 38.6
BcaC01g03576 Brassica carinata HOM05D007725 ORTHO05D009774 7.4e-20 102.8 157 38.9
TPR.G1910 Trifolium pratense HOM05D007725 ORTHO05D009774 6.7e-13 79.7 73 58.9
BcaC02g11617 Brassica carinata HOM05D007725 ORTHO05D009774 2.9e-08 64.3 50 66.0


User provided reference genes

Program Settings