Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g03421 Nelumbo nucifera HOM05D004072 ORTHO05D019491 1.4e-30 135.6 65 100.0
Nn3g20249 Nelumbo nucifera HOM05D004072 ORTHO05D005933 3.8e-20 100.9 53 88.7
Glyma.15G192700 Glycine max HOM05D004072 ORTHO05D005933 7.9e-18 93.2 51 80.4
Glyma.09G084300 Glycine max HOM05D004072 ORTHO05D005933 3.0e-17 91.3 51 80.4
TAR627G0650 Trochodendron aralioides HOM05D004072 ORTHO05D005933 3.0e-17 91.3 53 75.5
Atru.chr10.895 Acer truncatum HOM05D004072 ORTHO05D005933 6.7e-17 90.1 51 78.4
CiPaw.10G086200 Carya illinoinensis HOM05D004072 ORTHO05D005933 8.7e-17 89.7 51 76.5
Duzib132G0425 Durio zibethinus HOM05D004072 ORTHO05D005933 1.1e-16 89.4 51 76.5
Thecc.02G012200 Theobroma cacao HOM05D004072 ORTHO05D005933 1.1e-16 89.4 51 76.5
TAR626G0585 Trochodendron aralioides HOM05D004072 ORTHO05D005933 1.1e-16 89.4 51 76.5
DCAR_003864 Daucus carota HOM05D004072 ORTHO05D005933 1.5e-16 89.0 51 74.5
arahy.Tifrunner.gnm1.ann1.WCP5HM Arachis hypogaea HOM05D004072 ORTHO05D005933 1.9e-16 88.6 51 74.5
CANSAT35G1345 Cannabis sativa HOM05D004072 ORTHO05D005933 1.9e-16 88.6 51 78.4
Manes.06G055700 Manihot esculenta HOM05D004072 ORTHO05D005933 2.5e-16 88.2 51 76.5
Peaxi162Scf00670g00114 Petunia axillaris HOM05D004072 ORTHO05D005933 2.5e-16 88.2 51 74.5
Manes.14G122228 Manihot esculenta HOM05D004072 ORTHO05D005933 3.3e-16 87.8 49 77.6
Medtr2g048210 Medicago truncatula HOM05D004072 ORTHO05D005933 3.3e-16 87.8 51 74.5
TPR.G28615 Trifolium pratense HOM05D004072 ORTHO05D005933 3.3e-16 87.8 51 74.5
VMungo1309G2749 Vigna mungo HOM05D004072 ORTHO05D005933 3.3e-16 87.8 51 76.5
Duzib052G1035 Durio zibethinus HOM05D004072 ORTHO05D005933 4.3e-16 87.4 55 69.1
Sed0022754 Sechium edule HOM05D004072 ORTHO05D005933 4.3e-16 87.4 51 74.5
ClCG01G025080 Citrullus lanatus HOM05D004072 ORTHO05D005933 5.7e-16 87.0 51 74.5
Lj6g0006190 Lotus japonicus HOM05D004072 ORTHO05D005933 5.7e-16 87.0 51 72.5
Potri.001G357700 Populus trichocarpa HOM05D004072 ORTHO05D005933 5.7e-16 87.0 51 72.5
Sabra16G0235400 Salix brachista HOM05D004072 ORTHO05D005933 5.7e-16 87.0 51 72.5
Cc09_g08230 Coffea canephora HOM05D004072 ORTHO05D005933 7.4e-16 86.7 51 74.5
Potri.011G090200 Populus trichocarpa HOM05D004072 ORTHO05D005933 7.4e-16 86.7 51 74.5
TWI73G0101 Tripterygium wilfordii HOM05D004072 ORTHO05D005933 7.4e-16 86.7 51 72.5
HPP92_000967 Vanilla planifolia HOM05D004072 ORTHO05D005933 7.4e-16 86.7 53 69.8
HPP92_001000 Vanilla planifolia HOM05D004072 ORTHO05D005933 7.4e-16 86.7 53 69.8
MELO3C007083.2 Cucumis melo HOM05D004072 ORTHO05D005933 9.6e-16 86.3 51 74.5
CsaV3_6G052280 Cucumis sativus L. HOM05D004072 ORTHO05D005933 9.6e-16 86.3 51 74.5
Lalb_Chr08g0233191 Lupinus albus HOM05D004072 ORTHO05D005933 9.6e-16 86.3 51 74.5
Hund21569 Selenicereus undatus HOM05D004072 ORTHO05D005933 9.6e-16 86.3 51 76.5
CAN.G660.42 Capsicum annuum HOM05D004072 ORTHO05D005933 1.3e-15 85.9 51 72.5
COL.COLO4_17682 Corchorus olitorius HOM05D004072 ORTHO05D005933 1.3e-15 85.9 51 74.5
Dinv32181 Davidia involucrata HOM05D004072 ORTHO05D005933 1.3e-15 85.9 51 72.5
Nitab4.5_0008398g0020 Nicotiana tabacum HOM05D004072 ORTHO05D005933 1.3e-15 85.9 51 72.5
Psat1g019120 Pisum sativum HOM05D004072 ORTHO05D005933 1.3e-15 85.9 51 72.5
Actinidia07470 Actinidia chinensis HOM05D004072 ORTHO05D005933 1.6e-15 85.5 55 67.3
CiPaw.09G116100 Carya illinoinensis HOM05D004072 ORTHO05D005933 1.6e-15 85.5 51 74.5
Ca_02513_v3 Cicer arietinum L. HOM05D004072 ORTHO05D005933 2.1e-15 85.1 49 73.5
Phvul.009G217700 Phaseolus vulgaris HOM05D004072 ORTHO05D005933 2.1e-15 85.1 51 72.5
Sc24g0001460 Simmondsia chinensis HOM05D004072 ORTHO05D005933 2.1e-15 85.1 51 74.5
Gohir.D01G131100 Gossypium hirsutum HOM05D004072 ORTHO05D005933 2.8e-15 84.7 51 70.6
Gorai.002G162800 Gossypium raimondii HOM05D004072 ORTHO05D005933 2.8e-15 84.7 51 70.6
PSO541G2055 Papaver somniferum HOM05D004072 ORTHO05D005933 2.8e-15 84.7 53 69.8
PSO675G3632 Papaver somniferum HOM05D004072 ORTHO05D005933 2.8e-15 84.7 53 69.8
Solyc02g070260.4 Solanum lycopersicum HOM05D004072 ORTHO05D005933 2.8e-15 84.7 51 70.6
Sopen02g019350 Solanum pennellii HOM05D004072 ORTHO05D005933 2.8e-15 84.7 51 70.6
SGA_v2.0_scaffold223G42858 Striga asiatica HOM05D004072 ORTHO05D005933 2.8e-15 84.7 51 74.5
Lj1A1163T37 Lonicera japonica HOM05D004072 ORTHO05D019491 3.7e-15 84.3 51 72.5
Nitab4.5_0001181g0040 Nicotiana tabacum HOM05D004072 ORTHO05D005933 3.7e-15 84.3 49 73.5
CSS0029738 Camellia sinensis var. sinensis HOM05D004072 ORTHO05D005933 4.8e-15 84.0 51 72.5
Migut.M01885 Erythranthe guttata HOM05D004072 ORTHO05D005933 4.8e-15 84.0 55 63.6
ATR0165G006 Amborella trichopoda HOM05D004072 ORTHO05D005933 6.3e-15 83.6 53 71.7
A03p19230 Brassica napus HOM05D004072 ORTHO05D005933 8.2e-15 83.2 51 68.6
BraA03t11178Z Brassica rapa HOM05D004072 ORTHO05D005933 8.2e-15 83.2 51 68.6
Sp4g16960 Schrenkiella parvula HOM05D004072 ORTHO05D005933 8.2e-15 83.2 51 70.6
BcaC01g05784 Brassica carinata HOM05D004072 ORTHO05D005933 1.1e-14 82.8 51 68.6
Carub.0004s1637 Capsella rubella HOM05D004072 ORTHO05D005933 1.1e-14 82.8 51 70.6
CARHR128800 Cardamine hirsuta HOM05D004072 ORTHO05D005933 1.1e-14 82.8 51 70.6
Ciclev10014084m.g Citrus clementina HOM05D004072 ORTHO05D005933 1.1e-14 82.8 51 72.5
THA.LOC104813323 Tarenaya hassleriana HOM05D004072 ORTHO05D005933 1.1e-14 82.8 51 72.5
AL4G30670 Arabidopsis lyrata HOM05D004072 ORTHO05D005933 1.4e-14 82.4 51 68.6
AT2G34680 Arabidopsis thaliana HOM05D004072 ORTHO05D005933 1.4e-14 82.4 51 68.6
CDE02G4494 Ceratophyllum demersum HOM05D004072 ORTHO05D005933 1.8e-14 82.0 53 66.0
MD05G1274500 Malus domestica HOM05D004072 ORTHO05D005933 1.8e-14 82.0 51 68.6
MD10G1254200 Malus domestica HOM05D004072 ORTHO05D005933 1.8e-14 82.0 51 68.6
PGR031G0553 Punica granatum HOM05D004072 ORTHO05D005933 1.8e-14 82.0 51 68.6
Aqoxy1G01646_Aqoxy1G01645 Aquilegia oxysepala HOM05D004072 ORTHO05D005933 2.4e-14 81.6 53 69.8
C03p22430 Brassica napus HOM05D004072 ORTHO05D005933 2.4e-14 81.6 51 68.6
BolC3t14626H Brassica oleracea HOM05D004072 ORTHO05D005933 2.4e-14 81.6 51 68.6
Thhalv10016130m.g Eutrema salsugineum HOM05D004072 ORTHO05D005933 2.4e-14 81.6 51 68.6
Gohir.A01G139400 Gossypium hirsutum HOM05D004072 ORTHO05D005933 2.4e-14 81.6 51 70.6
THA.LOC104798608 Tarenaya hassleriana HOM05D004072 ORTHO05D005933 2.4e-14 81.6 51 68.6
Cpa.g.sc17.85 Carica papaya HOM05D004072 ORTHO05D005933 3.1e-14 81.3 47 76.6
arahy.Tifrunner.gnm1.ann1.39P5NE Arachis hypogaea HOM05D004072 ORTHO05D005933 4.1e-14 80.9 45 75.6
EL10Ac8g19581 Beta vulgaris HOM05D004072 ORTHO05D005933 4.1e-14 80.9 49 71.4
Prupe.4G089200 Prunus persica HOM05D004072 ORTHO05D005933 4.1e-14 80.9 51 66.7
AUR62038603 Chenopodium quinoa HOM05D004072 ORTHO05D005933 5.3e-14 80.5 49 67.3
AUR62042015 Chenopodium quinoa HOM05D004072 ORTHO05D005933 5.3e-14 80.5 49 67.3
GSVIVG01021613001 Vitis vinifera HOM05D004072 ORTHO05D005933 5.3e-14 80.5 51 68.6
ECA236G2867 Erigeron canadensis HOM05D004072 ORTHO05D005933 9.0e-14 79.7 51 64.7
FvH4_3g09950 Fragaria vesca HOM05D004072 ORTHO05D005933 1.2e-13 79.3 51 68.6
FAN11G0415 Fragaria x ananassa HOM05D004072 ORTHO05D005933 1.2e-13 79.3 51 68.6
RcHm_v2.0_Chr5g0015701 Rosa chinensis HOM05D004072 ORTHO05D005933 1.2e-13 79.3 51 64.7
FAN16G0609 Fragaria x ananassa HOM05D004072 ORTHO05D005933 1.5e-13 79.0 51 66.7
FAN21G2972 Fragaria x ananassa HOM05D004072 ORTHO05D005933 1.5e-13 79.0 51 66.7
FAN25G0515 Fragaria x ananassa HOM05D004072 ORTHO05D005933 1.5e-13 79.0 51 66.7
HanXRQChr04g0119071 Helianthus annuus HOM05D004072 ORTHO05D005933 1.5e-13 79.0 51 66.7
QL05p053312 Quercus lobata HOM05D004072 ORTHO05D005933 1.5e-13 79.0 51 74.5
Rhsim13G0119900 Rhododendron simsii HOM05D004072 ORTHO05D005933 1.5e-13 79.0 51 66.7
SalBow8G4752 Salvia bowleyana HOM05D004072 ORTHO05D005933 2.0e-13 78.6 51 64.7
Eucgr.E02482 Eucalyptus grandis HOM05D004072 ORTHO05D005933 2.6e-13 78.2 51 68.6
Lsat_1_v5_gn_7_29400 Lactuca sativa HOM05D004072 ORTHO05D005933 2.6e-13 78.2 51 66.7
MSTRG.16285 Avicennia marina HOM05D004072 ORTHO05D005933 4.5e-13 77.4 51 62.7
vmacro03398 Vaccinium macrocarpon HOM05D004072 ORTHO05D005933 4.5e-13 77.4 48 72.9
SEGI_16447 Sequoiadendron giganteum HOM05D004072 ORTHO05D005933 7.6e-13 76.6 53 62.3
Aa31LG10G6650 Aethionema arabicum HOM05D004072 ORTHO05D005933 3.8e-12 74.3 51 62.7
CARHR128810 Cardamine hirsuta HOM05D004072 ORTHO05D019491 8.4e-12 73.2 43 69.8
Oeu040089.1 Olea europaea HOM05D004072 ORTHO05D005933 1.9e-11 72.0 45 68.9
SMO271G0077 Selaginella moellendorffii HOM05D004072 ORTHO05D005933 2.7e-10 68.2 47 61.7
CBR_g51063 Chara braunii HOM05D004072 ORTHO05D005933 6.1e-10 67.0 51 52.9
Rhsim07G0133800 Rhododendron simsii HOM05D004072 ORTHO05D005933 1.3e-09 65.9 49 63.3
Pp3c14_11530 Physcomitrium patens HOM05D004072 ORTHO05D005933 1.8e-09 65.5 47 61.7
Pp3c17_7410 Physcomitrium patens HOM05D004072 ORTHO05D005933 3.9e-09 64.3 46 60.9
Medtr8g464200 Medicago truncatula HOM05D004072 ORTHO05D005933 6.7e-09 63.5 44 63.6
Zm00001eb299970 Zea mays HOM05D004072 ORTHO05D005933 8.7e-09 63.2 51 56.9
Mapoly0023s0068 Marchantia polymorpha HOM05D004072 ORTHO05D005933 1.1e-08 62.8 45 57.8
Actinidia04622 Actinidia chinensis HOM05D004072 ORTHO05D019491 1.5e-08 62.4 57 50.9
CSS0009233 Camellia sinensis var. sinensis HOM05D004072 ORTHO05D019491 4.8e-07 57.4 29 82.8
SMO308G0046 Selaginella moellendorffii HOM05D004072 ORTHO05D005933 8.2e-07 56.6 47 53.2


User provided reference genes

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