Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g03388 Nelumbo nucifera HOM05D004496 ORTHO05D005513 5.0e-172 607.8 339 100.0
Nn1g07279 Nelumbo nucifera HOM05D004496 ORTHO05D005513 7.3e-107 391.3 364 70.6
TAR627G0164 Trochodendron aralioides HOM05D004496 ORTHO05D005513 2.9e-95 352.8 339 65.8
TAR627G0966 Trochodendron aralioides HOM05D004496 ORTHO05D005513 3.8e-95 352.4 339 65.8
Dinv13941 Davidia involucrata HOM05D004496 ORTHO05D005513 9.0e-89 331.3 316 68.0
TAR624G0763 Trochodendron aralioides HOM05D001218 ORTHO05D003142 8.4e-87 324.7 333 62.8
Dinv20109 Davidia involucrata HOM05D004496 ORTHO05D005950 2.1e-85 320.1 312 62.5
Nn2g15240 Nelumbo nucifera HOM05D004496 ORTHO05D005513 1.0e-84 317.8 281 69.0
CiPaw.09G098400 Carya illinoinensis HOM05D004496 ORTHO05D005513 7.1e-78 295.0 349 58.5
CiPaw.10G074800 Carya illinoinensis HOM05D004496 ORTHO05D005513 4.6e-77 292.4 337 60.2
Nn3g21624 Nelumbo nucifera HOM05D004496 ORTHO05D005513 1.0e-76 291.2 297 68.4
Hma1.2p1_0298F.1_g117440 Hydrangea macrophylla HOM05D004496 ORTHO05D005513 5.1e-76 288.9 364 58.5
Ca_00696_v3 Cicer arietinum L. HOM05D004496 ORTHO05D005513 8.7e-76 288.1 331 58.6
Psat1g175480 Pisum sativum HOM05D004496 ORTHO05D005513 5.6e-75 285.4 311 60.8
Nitab4.5_0006125g0010 Nicotiana tabacum HOM05D004496 ORTHO05D005513 2.1e-74 283.5 375 52.0
MD10G1327300 Malus domestica HOM05D004496 ORTHO05D005513 1.1e-73 281.2 372 54.3
Duzib235G0420 Durio zibethinus HOM05D004496 ORTHO05D005513 1.4e-73 280.8 343 59.2
Migut.M01368 Erythranthe guttata HOM05D004496 ORTHO05D005513 2.4e-73 280.0 332 55.4
Gohir.D05G176300 Gossypium hirsutum HOM05D004496 ORTHO05D005513 1.3e-71 274.2 351 58.7
Lj2P264T22 Lonicera japonica HOM05D004496 ORTHO05D005513 8.4e-71 271.6 332 51.2
Thecc.06G228600 Theobroma cacao HOM05D004496 ORTHO05D005513 2.5e-70 270.0 341 58.7
MSTRG.7183 Avicennia marina HOM05D004496 ORTHO05D005513 4.2e-70 269.2 352 52.6
Nitab4.5_0009517g0010 Nicotiana tabacum HOM05D004496 ORTHO05D005513 5.5e-70 268.9 375 51.2
Ciclev10015792m.g Citrus clementina HOM05D004496 ORTHO05D005513 1.2e-69 267.7 350 50.0
PGSC0003DMG400016725 Solanum tuberosum HOM05D004496 ORTHO05D005513 1.2e-69 267.7 357 53.2
Glyma.15G112200 Glycine max HOM05D004496 ORTHO05D005513 3.5e-69 266.2 332 56.3
Prupe.4G014700 Prunus persica HOM05D004496 ORTHO05D005513 3.5e-69 266.2 361 52.6
Sabra11G0010200 Salix brachista HOM05D004496 ORTHO05D005513 3.5e-69 266.2 338 60.4
TWI38G0464 Tripterygium wilfordii HOM05D004496 ORTHO05D005513 3.5e-69 266.2 337 54.6
Duzib192G0344 Durio zibethinus HOM05D004496 ORTHO05D005513 4.6e-69 265.8 351 55.0
Solyc02g081150.1 Solanum lycopersicum HOM05D004496 ORTHO05D005513 7.9e-69 265.0 342 55.0
Sabra11G0008600 Salix brachista HOM05D004496 ORTHO05D005513 1.0e-68 264.6 338 60.4
Nn1g01506 Nelumbo nucifera HOM05D004496 ORTHO05D005513 1.8e-68 263.8 159 86.2
FAN25G1366 Fragaria x ananassa HOM05D004496 ORTHO05D005513 2.3e-68 263.5 330 54.8
Medtr2g024980 Medicago truncatula HOM05D004496 ORTHO05D005513 2.3e-68 263.5 336 57.4
ClCG01G021640 Citrullus lanatus HOM05D004496 ORTHO05D005513 3.9e-68 262.7 351 53.0
TAR626G0621 Trochodendron aralioides HOM05D004496 ORTHO05D005513 5.1e-68 262.3 344 54.7
CAN.G1014.49 Capsicum annuum HOM05D004496 ORTHO05D005513 6.7e-68 261.9 341 51.6
Sopen02g025790 Solanum pennellii HOM05D004496 ORTHO05D005513 1.1e-67 261.2 342 54.1
Gohir.A05G173300 Gossypium hirsutum HOM05D004496 ORTHO05D005513 2.5e-67 260.0 348 56.6
CANSAT56G2524 Cannabis sativa HOM05D004496 ORTHO05D005513 5.7e-67 258.8 397 52.4
Haze_06861 Corylus avellana HOM05D004496 ORTHO05D005513 1.6e-66 257.3 350 55.4
Lalb_Chr15g0087811 Lupinus albus HOM05D004496 ORTHO05D005513 2.8e-66 256.5 319 56.4
Lalb_Chr18g0056781 Lupinus albus HOM05D004496 ORTHO05D005513 4.1e-65 252.7 315 56.8
CSS0046352 Camellia sinensis var. sinensis HOM05D004496 ORTHO05D005513 9.0e-65 251.5 326 56.7
PSO210G3984 Papaver somniferum HOM05D004496 ORTHO05D005513 2.6e-64 250.0 413 50.8
Glyma.09G007852 Glycine max HOM05D004496 ORTHO05D005513 4.5e-64 249.2 324 55.6
GSVIVG01004818001 Vitis vinifera HOM05D004496 ORTHO05D005513 1.0e-63 248.1 248 57.3
Potri.011G015500 Populus trichocarpa HOM05D004496 ORTHO05D005513 1.7e-63 247.3 341 56.3
Cfa000158 Carpinus fangiana HOM05D004496 ORTHO05D005513 2.2e-63 246.9 356 54.2
Sabra11G0011700 Salix brachista HOM05D004496 ORTHO05D005513 2.9e-63 246.5 338 58.0
TWI38G0680 Tripterygium wilfordii HOM05D004496 ORTHO05D005513 2.9e-63 246.5 354 54.0
Aqoxy1G03511 Aquilegia oxysepala HOM05D004496 ORTHO05D005513 5.0e-63 245.7 368 50.8
MSTRG.13128 Avicennia marina HOM05D004496 ORTHO05D005513 5.0e-63 245.7 348 48.3
Phvul.006G145400 Phaseolus vulgaris HOM05D004496 ORTHO05D005513 5.0e-63 245.7 332 53.0
FvH4_3g01370 Fragaria vesca HOM05D004496 ORTHO05D005513 1.1e-62 244.6 329 55.0
Actinidia26886 Actinidia chinensis HOM05D004496 ORTHO05D005513 1.4e-62 244.2 324 55.6
Lj6g0013804 Lotus japonicus HOM05D004496 ORTHO05D005513 2.5e-62 243.4 311 57.2
MD05G1352700 Malus domestica HOM05D004496 ORTHO05D005513 2.5e-62 243.4 358 53.4
Rhsim13G0149900 Rhododendron simsii HOM05D004496 ORTHO05D005513 4.2e-62 242.7 333 52.9
Sp7g20330 Schrenkiella parvula HOM05D004496 ORTHO05D005513 9.4e-62 241.5 338 55.0
Manes.16G002700 Manihot esculenta HOM05D004496 ORTHO05D005513 2.1e-61 240.4 326 57.4
PSO832G0430 Papaver somniferum HOM05D004496 ORTHO05D005513 3.6e-61 239.6 419 49.2
SalBow8G1688 Salvia bowleyana HOM05D004496 ORTHO05D005513 3.6e-61 239.6 343 47.2
Lsat_1_v5_gn_7_14880 Lactuca sativa HOM05D004496 ORTHO05D005513 1.4e-60 237.7 325 52.6
Phvul.003G081900 Phaseolus vulgaris HOM05D004496 ORTHO05D005513 1.8e-60 237.3 331 47.7
MELO3C007420.2 Cucumis melo HOM05D004496 ORTHO05D005513 2.3e-60 236.9 330 52.1
vmacro03662 Vaccinium macrocarpon HOM05D004496 ORTHO05D005513 1.5e-59 234.2 360 50.3
Actinidia02342 Actinidia chinensis HOM05D004496 ORTHO05D005513 2.5e-59 233.4 321 54.8
CsaV3_6G048690 Cucumis sativus L. HOM05D004496 ORTHO05D005513 2.5e-59 233.4 342 50.0
THA.LOC104812981 Tarenaya hassleriana HOM05D004496 ORTHO05D005513 4.3e-59 232.6 349 53.6
BraA01t01298Z Brassica rapa HOM05D004496 ORTHO05D005513 5.7e-59 232.3 336 52.7
Atru.chr10.2286 Acer truncatum HOM05D004496 ORTHO05D005513 7.4e-59 231.9 332 53.0
A01p13560 Brassica napus HOM05D004496 ORTHO05D005513 7.4e-59 231.9 336 52.7
PGR042G2934 Punica granatum HOM05D004496 ORTHO05D005513 7.4e-59 231.9 398 48.5
THA.LOC104806318 Tarenaya hassleriana HOM05D004496 ORTHO05D005513 1.3e-58 231.1 349 53.0
Carub.0007s1912 Capsella rubella HOM05D004496 ORTHO05D005513 4.1e-57 226.1 344 50.6
BcaNung03756 Brassica carinata HOM05D004496 ORTHO05D005513 5.3e-57 225.7 335 52.5
BcaC09g51153 Brassica carinata HOM05D004496 ORTHO05D005513 1.2e-56 224.6 333 54.7
C01p16430 Brassica napus HOM05D004496 ORTHO05D005513 1.2e-56 224.6 333 54.7
BolC1t01593H Brassica oleracea HOM05D004496 ORTHO05D005513 1.2e-56 224.6 333 54.7
Cpa.g.sc3209.1 Carica papaya HOM05D004496 ORTHO05D005513 1.2e-56 224.6 338 50.6
A03p53360 Brassica napus HOM05D004496 ORTHO05D005513 1.5e-56 224.2 331 53.5
Thhalv10025698m.g Eutrema salsugineum HOM05D004496 ORTHO05D005513 2.6e-56 223.4 331 52.3
TWI63G1509 Tripterygium wilfordii HOM05D004496 ORTHO05D005513 2.6e-56 223.4 346 51.4
MBI19_g19808_MAGBIO Magnolia biondii HOM05D004496 ORTHO05D005513 5.9e-56 222.2 331 50.8
RcHm_v2.0_Chr5g0001991 Rosa chinensis HOM05D004496 ORTHO05D005513 5.9e-56 222.2 333 53.8
Potri.004G003900 Populus trichocarpa HOM05D004496 ORTHO05D005513 7.7e-56 221.9 349 52.4
Thhalv10028862m.g Eutrema salsugineum HOM05D004496 ORTHO05D005513 2.2e-55 220.3 315 47.3
BcaNung01704 Brassica carinata HOM05D004496 ORTHO05D005513 6.5e-55 218.8 332 53.3
Peaxi162Scf00708g00013 Petunia axillaris HOM05D004496 ORTHO05D005513 6.5e-55 218.8 334 52.1
Migut.H01591 Erythranthe guttata HOM05D004496 ORTHO05D005513 8.5e-55 218.4 336 48.8
Lsat_1_v5_gn_4_61701 Lactuca sativa HOM05D004496 ORTHO05D005513 1.1e-54 218.0 344 50.9
Potri.006G270100 Populus trichocarpa HOM05D004496 ORTHO05D005513 1.9e-54 217.2 316 54.7
AL7G31460 Arabidopsis lyrata HOM05D004496 ORTHO05D005513 4.2e-54 216.1 338 51.2
C07p51660 Brassica napus HOM05D004496 ORTHO05D005513 4.2e-54 216.1 330 51.2
Gorai.009G181700 Gossypium raimondii HOM05D004496 ORTHO05D005513 7.2e-54 215.3 292 57.5
Nitab4.5_0000005g0040 Nicotiana tabacum HOM05D004496 ORTHO05D005513 2.1e-53 213.8 325 47.7
CARHR229080 Cardamine hirsuta HOM05D004496 ORTHO05D005513 2.7e-53 213.4 351 50.1
arahy.Tifrunner.gnm1.ann1.SI7QTZ Arachis hypogaea HOM05D004496 ORTHO05D005513 3.6e-53 213.0 329 51.7
QL05p071740 Quercus lobata HOM05D004496 ORTHO05D005513 3.6e-53 213.0 357 48.5
Aa31LG6G4310 Aethionema arabicum HOM05D004496 ORTHO05D005513 4.7e-53 212.6 346 51.2
BcaNung00807 Brassica carinata HOM05D004496 ORTHO05D005513 7.9e-53 211.8 330 50.9
Sabra04G0002100 Salix brachista HOM05D004496 ORTHO05D005513 7.9e-53 211.8 338 49.1
VMungo1215G0904 Vigna mungo HOM05D004496 ORTHO05D005513 1.4e-52 211.1 325 46.5
arahy.Tifrunner.gnm1.ann1.EH65IB Arachis hypogaea HOM05D004496 ORTHO05D005513 1.8e-52 210.7 330 51.5
Nitab4.5_0005882g0010 Nicotiana tabacum HOM05D004496 ORTHO05D005513 1.8e-52 210.7 327 46.2
Sed0021394 Sechium edule HOM05D004496 ORTHO05D005513 3.0e-52 209.9 344 43.9
CDE04G1983 Ceratophyllum demersum HOM05D004496 ORTHO05D005513 2.6e-51 206.8 319 45.1
Nn1g06547 Nelumbo nucifera HOM05D004496 ORTHO05D005513 2.6e-51 206.8 128 81.2
Gohir.D06G157600 Gossypium hirsutum HOM05D004496 ORTHO05D005513 9.7e-51 204.9 308 50.3
Gorai.010G184200 Gossypium raimondii HOM05D004496 ORTHO05D005513 9.7e-51 204.9 308 50.3
Sc17g0007590 Simmondsia chinensis HOM05D004496 ORTHO05D005513 5.3e-49 199.1 337 48.4
EL10Ac8g20132 Beta vulgaris HOM05D004496 ORTHO05D005513 1.2e-48 198.0 295 47.1
Oeu007154.1 Olea europaea HOM05D004496 ORTHO05D005513 1.2e-48 198.0 292 52.4
Manes.17G027100 Manihot esculenta HOM05D004496 ORTHO05D005513 5.9e-48 195.7 278 53.2
Glyma.07G263700 Glycine max HOM05D004496 ORTHO05D005513 2.9e-47 193.4 314 42.4
Potri.006G282500 Populus trichocarpa HOM05D004496 ORTHO05D005513 1.4e-46 191.0 341 49.0
HanXRQChr15g0470781 Helianthus annuus HOM05D004496 ORTHO05D005513 7.2e-46 188.7 321 49.2
Potri.006G282000 Populus trichocarpa HOM05D004496 ORTHO05D005513 7.2e-46 188.7 344 49.1
Sed0016463 Sechium edule HOM05D004496 ORTHO05D005513 7.2e-46 188.7 277 50.9
THA.LOC104813445 Tarenaya hassleriana HOM05D004496 ORTHO05D005513 2.1e-45 187.2 324 49.4
SGA_v2.0_scaffold89G27486 Striga asiatica HOM05D004496 ORTHO05D005513 3.6e-45 186.4 363 48.5
PGR004G2243 Punica granatum HOM05D004496 ORTHO05D005513 2.3e-44 183.7 337 44.8
BcaNung03755 Brassica carinata HOM05D004496 ORTHO05D005513 3.0e-44 183.3 251 55.4
Lj4g0028181 Lotus japonicus HOM05D004496 ORTHO05D005513 3.3e-43 179.9 312 49.4
Peaxi162Scf00294g00097 Petunia axillaris HOM05D004496 ORTHO05D005513 1.3e-42 177.9 286 43.4
AT4G22190 Arabidopsis thaliana HOM05D004496 ORTHO05D005513 2.4e-41 173.7 357 45.9
Ah.09g234500 Amaranthus hybridus HOM05D004496 ORTHO05D005950 3.1e-41 173.3 313 45.0
ECA236G1118 Erigeron canadensis HOM05D004496 ORTHO05D005513 1.6e-40 171.0 325 39.7
COL.COLO4_31834 Corchorus olitorius HOM05D004496 ORTHO05D005513 5.9e-40 169.1 162 60.5
DCAR_002205 Daucus carota HOM05D004496 ORTHO05D005513 1.0e-39 168.3 353 39.7
HPP92_023384 Vanilla planifolia HOM05D004496 ORTHO05D005513 1.7e-39 167.5 330 42.1
Sp6g04650 Schrenkiella parvula HOM05D004496 ORTHO05D005513 6.5e-39 165.6 329 44.1
Gohir.A06G151400 Gossypium hirsutum HOM05D004496 ORTHO05D005513 8.5e-39 165.2 242 54.5
ATR0059G030 Amborella trichopoda HOM05D004496 ORTHO05D005513 3.6e-37 159.8 377 41.6
Oeu003154.1 Olea europaea HOM05D004496 ORTHO05D005513 3.6e-37 159.8 326 40.2
Aa31LG9G9910 Aethionema arabicum HOM05D004496 ORTHO05D005950 2.3e-36 157.1 208 48.1
CDE07G1551 Ceratophyllum demersum HOM05D004496 ORTHO05D005513 2.3e-36 157.1 283 42.4
Lj1P1236T60 Lonicera japonica HOM05D004496 ORTHO05D005513 8.8e-36 155.2 160 57.5
Potri.006G283300 Populus trichocarpa HOM05D004496 ORTHO05D005513 3.7e-34 149.8 305 45.9
Medtr4g132690 Medicago truncatula HOM05D004496 ORTHO05D005513 5.9e-32 142.5 326 42.3
Psat4g004280 Pisum sativum HOM05D004496 ORTHO05D005513 1.0e-31 141.7 260 48.8
Nn2g15668 Nelumbo nucifera HOM05D004496 ORTHO05D005513 1.2e-29 134.8 282 36.9
Eucgr.D01366 Eucalyptus grandis HOM05D004496 ORTHO05D005513 1.8e-28 131.0 154 52.6
unitig_26.g9398 Utricularia gibba HOM05D004496 ORTHO05D005513 1.5e-27 127.9 312 35.3
BraA03t14400Z Brassica rapa HOM05D004496 ORTHO05D005513 2.8e-26 123.6 154 50.6
SGA_v2.0_scaffold4G01894 Striga asiatica HOM05D004496 ORTHO05D005513 1.0e-23 115.2 343 31.8
TPR.G37047 Trifolium pratense HOM05D004496 ORTHO05D005513 1.2e-21 108.2 214 43.5
Ca_21060_v3 Cicer arietinum L. HOM05D004496 ORTHO05D005513 2.1e-21 107.5 254 35.4
unitig_749.g13622 Utricularia gibba HOM05D004496 ORTHO05D005513 2.8e-21 107.1 280 35.0
Zm00001eb169380 Zea mays HOM05D004496 ORTHO05D005513 6.1e-21 105.9 346 41.3
Zm00001eb112850 Zea mays HOM05D004496 ORTHO05D005513 9.8e-19 98.6 351 35.6
HPP92_008063 Vanilla planifolia HOM05D004496 ORTHO05D005513 3.7e-18 96.7 162 44.4
Os11g0497350 Oryza sativa ssp. japonica HOM05D004496 ORTHO05D005513 4.5e-16 89.7 329 38.0
unitig_748.g7579 Utricularia gibba HOM05D004496 ORTHO05D005513 1.4e-09 68.2 175 32.6


User provided reference genes

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