Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g03358 Nelumbo nucifera HOM05D000172 ORTHO05D008216 2.5e-107 392.1 197 100.0
TAR624G1331 Trochodendron aralioides HOM05D000172 ORTHO05D008216 1.1e-86 323.6 197 81.2
MBI16_g26181_MAGBIO Magnolia biondii HOM05D000172 ORTHO05D008216 2.2e-71 272.7 197 70.6
CSS0028035 Camellia sinensis var. sinensis HOM05D000172 ORTHO05D000781 1.9e-70 269.6 177 74.0
Actinidia13731 Actinidia chinensis HOM05D000172 ORTHO05D008216 1.1e-67 260.4 165 73.9
Atru.chr6.3270 Acer truncatum HOM05D000172 ORTHO05D008216 2.8e-66 255.8 208 63.5
Ciclev10016727m.g Citrus clementina HOM05D000172 ORTHO05D008216 4.8e-66 255.0 208 63.5
Manes.13G066180 Manihot esculenta HOM05D000172 ORTHO05D008216 1.4e-65 253.4 208 61.1
Hma1.2p1_2406F.1_g321460 Hydrangea macrophylla HOM05D000172 ORTHO05D008216 2.4e-65 252.7 198 64.1
Peaxi162Scf01333g00137 Petunia axillaris HOM05D000172 ORTHO05D008216 2.4e-65 252.7 179 68.7
Cfa014307 Carpinus fangiana HOM05D000172 ORTHO05D008216 4.0e-65 251.9 198 64.1
Thecc.01G183500 Theobroma cacao HOM05D000172 ORTHO05D008216 1.5e-64 250.0 208 60.1
Eucgr.K00733 Eucalyptus grandis HOM05D000172 ORTHO05D008216 7.6e-64 247.7 207 60.9
Hma1.2p1_0405F.1_g145530 Hydrangea macrophylla HOM05D000172 ORTHO05D008216 7.6e-64 247.7 192 65.1
Nitab4.5_0000130g0110 Nicotiana tabacum HOM05D000172 ORTHO05D008216 7.6e-64 247.7 181 67.4
Aqoxy1G04174 Aquilegia oxysepala HOM05D000172 ORTHO05D008216 2.9e-63 245.7 185 65.4
PGSC0003DMG400000660 Solanum tuberosum HOM05D000172 ORTHO05D008216 4.9e-63 245.0 186 65.1
Nitab4.5_0010117g0030 Nicotiana tabacum HOM05D000172 ORTHO05D008216 1.1e-62 243.8 179 66.5
Sopen07g024820 Solanum pennellii HOM05D000172 ORTHO05D008216 1.4e-62 243.4 186 65.1
CAN.G784.10 Capsicum annuum HOM05D000172 ORTHO05D008216 1.9e-62 243.0 182 67.0
GSVIVG01030516001 Vitis vinifera HOM05D000172 ORTHO05D008216 4.2e-62 241.9 161 72.0
Duzib138G0791 Durio zibethinus HOM05D000172 ORTHO05D000781 2.1e-61 239.6 155 70.3
MSTRG.14128 Avicennia marina HOM05D000172 ORTHO05D008216 2.7e-61 239.2 174 69.5
Atru.chr6.3269 Acer truncatum HOM05D000172 ORTHO05D008216 3.5e-61 238.8 155 72.9
MD09G1115500 Malus domestica HOM05D000172 ORTHO05D000781 4.6e-61 238.4 196 60.2
Gohir.A07G168450 Gossypium hirsutum HOM05D000172 ORTHO05D008216 1.3e-60 236.9 207 60.4
MD17G1107300 Malus domestica HOM05D000172 ORTHO05D008216 1.7e-60 236.5 188 61.7
Rhsim06G0168800 Rhododendron simsii HOM05D000172 ORTHO05D008216 1.7e-60 236.5 190 62.6
CANSAT78G2170 Cannabis sativa HOM05D000172 ORTHO05D000781 2.3e-60 236.1 155 70.3
Prupe.3G209000 Prunus persica HOM05D000172 ORTHO05D008216 2.3e-60 236.1 184 62.0
TWI36G0853 Tripterygium wilfordii HOM05D000172 ORTHO05D000781 3.9e-60 235.3 155 72.3
Cpa.g.sc132.32 Carica papaya HOM05D000172 ORTHO05D008216 1.9e-59 233.0 155 70.3
Gohir.D07G174800 Gossypium hirsutum HOM05D000172 ORTHO05D008216 1.9e-59 233.0 205 58.5
Potri.014G159600 Populus trichocarpa HOM05D000172 ORTHO05D008216 1.9e-59 233.0 190 60.5
Sabra14G0121300 Salix brachista HOM05D000172 ORTHO05D008216 5.6e-59 231.5 190 58.9
arahy.Tifrunner.gnm1.ann1.EDY71B Arachis hypogaea HOM05D000172 ORTHO05D008216 9.6e-59 230.7 190 60.5
CDE04G1581 Ceratophyllum demersum HOM05D000172 ORTHO05D008216 9.6e-59 230.7 164 67.1
SGA_v2.0_scaffold49G18358 Striga asiatica HOM05D000172 ORTHO05D008216 1.6e-58 229.9 170 67.1
Gorai.001G195500 Gossypium raimondii HOM05D000172 ORTHO05D008216 3.6e-58 228.8 205 57.6
COL.COLO4_06741 Corchorus olitorius HOM05D000172 ORTHO05D008216 4.8e-58 228.4 194 59.8
Sc12g0002040 Simmondsia chinensis HOM05D000172 ORTHO05D008216 8.1e-58 227.6 200 56.0
HanXRQChr04g0126831 Helianthus annuus HOM05D000172 ORTHO05D008216 4.0e-57 225.3 172 60.5
EL10Ac9g22821 Beta vulgaris HOM05D000172 ORTHO05D008216 9.0e-57 224.2 180 59.4
PGR142G2841 Punica granatum HOM05D000172 ORTHO05D008216 1.2e-56 223.8 209 55.5
RcHm_v2.0_Chr2g0157891 Rosa chinensis HOM05D000172 ORTHO05D008216 5.8e-56 221.5 193 55.4
Sed0000051 Sechium edule HOM05D000172 ORTHO05D008216 1.3e-55 220.3 188 60.1
FAN14G3302 Fragaria x ananassa HOM05D000172 ORTHO05D008216 2.2e-55 219.5 213 53.1
FAN14G3681 Fragaria x ananassa HOM05D000172 ORTHO05D008216 2.2e-55 219.5 213 53.1
VMungo0647G0578 Vigna mungo HOM05D000172 ORTHO05D008216 4.9e-55 218.4 198 58.6
FvH4_6g41990 Fragaria vesca HOM05D000172 ORTHO05D008216 1.1e-54 217.2 201 53.7
ClCG02G018130 Citrullus lanatus HOM05D000172 ORTHO05D008216 1.9e-54 216.5 152 67.8
SEGI_13182 Sequoiadendron giganteum HOM05D000172 ORTHO05D008216 1.9e-54 216.5 172 61.6
PSO210G7646 Papaver somniferum HOM05D000172 ORTHO05D008216 2.4e-54 216.1 194 57.2
FAN09G4057 Fragaria x ananassa HOM05D000172 ORTHO05D000781 7.1e-54 214.5 178 56.7
Sed0027341 Sechium edule HOM05D000172 ORTHO05D008216 7.1e-54 214.5 185 57.3
Lalb_Chr17g0347191 Lupinus albus HOM05D000172 ORTHO05D008216 1.2e-53 213.8 189 56.1
PSO832G3827 Papaver somniferum HOM05D000172 ORTHO05D008216 1.2e-53 213.8 191 56.5
FAN05G3852 Fragaria x ananassa HOM05D000172 ORTHO05D008216 1.6e-53 213.4 193 53.9
FAN02G3472 Fragaria x ananassa HOM05D000172 ORTHO05D008216 4.6e-53 211.8 201 52.2
Glyma.02G267200 Glycine max HOM05D000172 ORTHO05D008216 6.0e-53 211.5 197 56.3
LjContig00029g0008644 Lotus japonicus HOM05D000172 ORTHO05D008216 6.0e-53 211.5 200 53.0
THA.LOC104826130 Tarenaya hassleriana HOM05D000172 ORTHO05D008216 7.9e-53 211.1 192 52.6
SalBow1G7277 Salvia bowleyana HOM05D000172 ORTHO05D008216 1.3e-52 210.3 205 54.6
Cc05_g02620 Coffea canephora HOM05D000172 ORTHO05D008216 1.8e-52 209.9 164 61.6
MELO3C019724.2 Cucumis melo HOM05D000172 ORTHO05D008216 2.3e-52 209.5 162 61.7
Carub.0001s0423 Capsella rubella HOM05D000172 ORTHO05D008216 8.7e-52 207.6 181 56.4
Migut.H01248 Erythranthe guttata HOM05D000172 ORTHO05D008216 8.7e-52 207.6 172 62.8
AL1G14720 Arabidopsis lyrata HOM05D000172 ORTHO05D008216 1.1e-51 207.2 181 56.4
Phvul.008G214900 Phaseolus vulgaris HOM05D000172 ORTHO05D008216 1.1e-51 207.2 190 57.4
CsaV3_6G015520 Cucumis sativus L. HOM05D000172 ORTHO05D008216 1.5e-51 206.8 162 61.7
HPP92_000210 Vanilla planifolia HOM05D000172 ORTHO05D008216 2.5e-51 206.1 169 62.1
Sp1g03860 Schrenkiella parvula HOM05D000172 ORTHO05D008216 4.3e-51 205.3 197 54.3
HPP92_000219 Vanilla planifolia HOM05D000172 ORTHO05D008216 4.3e-51 205.3 169 62.1
Psat2g026560 Pisum sativum HOM05D000172 ORTHO05D008216 1.3e-50 203.8 199 53.8
Lsat_1_v5_gn_7_94941 Lactuca sativa HOM05D000172 ORTHO05D008216 2.8e-50 202.6 172 55.2
TPR.G25655 Trifolium pratense HOM05D000172 ORTHO05D008216 1.1e-49 200.7 205 51.7
Thhalv10008833m.g Eutrema salsugineum HOM05D000172 ORTHO05D008216 2.4e-49 199.5 191 52.9
BcaB03g13463 Brassica carinata HOM05D000172 ORTHO05D008216 1.2e-48 197.2 190 52.1
BcaC07g36869 Brassica carinata HOM05D001534 ORTHO05D003503 2.0e-48 196.4 189 52.4
A08p36620 Brassica napus HOM05D001534 ORTHO05D003503 2.6e-48 196.1 189 52.4
BraA08t35564Z Brassica rapa HOM05D001534 ORTHO05D003503 2.6e-48 196.1 182 53.3
Medtr5g084980 Medicago truncatula HOM05D000172 ORTHO05D008216 2.6e-48 196.1 155 61.3
Solyc07g049470.4 Solanum lycopersicum HOM05D000172 ORTHO05D008216 7.6e-48 194.5 140 69.3
Dinv39759 Davidia involucrata HOM05D000172 ORTHO05D008216 1.0e-47 194.1 123 75.6
C08p01620 Brassica napus HOM05D001534 ORTHO05D003503 2.9e-47 192.6 155 58.1
BolC8t46965H Brassica oleracea HOM05D001534 ORTHO05D003503 2.9e-47 192.6 155 58.1
CARHR004400 Cardamine hirsuta HOM05D000172 ORTHO05D008216 6.5e-47 191.4 191 52.9
unitig_578.g16772 Utricularia gibba HOM05D000172 ORTHO05D008216 1.1e-46 190.7 174 54.6
ECA236G1458 Erigeron canadensis HOM05D000002 ORTHO05D000001 5.5e-46 188.3 170 52.4
Os04g0669100 Oryza sativa ssp. japonica HOM05D000172 ORTHO05D008216 5.5e-46 188.3 154 57.8
Zm00001eb066900 Zea mays HOM05D000172 ORTHO05D008216 2.7e-45 186.0 184 51.6
Zm00001eb433230 Zea mays HOM05D000172 ORTHO05D008216 4.3e-43 178.7 167 50.9
ATR1128G110 Amborella trichopoda HOM05D000172 ORTHO05D008216 2.1e-42 176.4 122 68.9
SalBow1G5012 Salvia bowleyana HOM05D000172 ORTHO05D008216 7.6e-40 167.9 197 49.2
QL08p030202 Quercus lobata HOM05D000172 ORTHO05D008216 1.3e-39 167.2 124 63.7
QL93p0185_0050 Quercus lobata HOM05D000172 ORTHO05D008216 2.5e-38 162.9 124 62.9
vmacro12154 Vaccinium macrocarpon HOM05D000172 ORTHO05D008216 2.1e-37 159.8 122 66.4
AUR62015120 Chenopodium quinoa HOM05D000172 ORTHO05D008216 3.9e-36 155.6 122 60.7
Aa31LG1G19790 Aethionema arabicum HOM05D000172 ORTHO05D008216 9.7e-35 151.0 202 42.6
DCAR_019254 Daucus carota HOM05D000172 ORTHO05D008216 1.1e-33 147.5 122 59.0
Glyma.14G050300 Glycine max HOM05D000172 ORTHO05D008216 2.9e-31 139.4 127 55.1
arahy.Tifrunner.gnm1.ann1.YBUA9J Arachis hypogaea HOM05D000172 ORTHO05D008216 2.5e-30 136.3 97 66.0
CiPaw.03G154000 Carya illinoinensis HOM05D000172 ORTHO05D008216 6.1e-29 131.7 151 47.7
arahy.Tifrunner.gnm1.ann1.Z24BKS Arachis hypogaea HOM05D000172 ORTHO05D008216 7.9e-29 131.3 102 62.7
arahy.Tifrunner.gnm1.ann1.2252MW Arachis hypogaea HOM05D000172 ORTHO05D008216 1.4e-28 130.6 101 62.4
Aqoxy1G04172 Aquilegia oxysepala HOM05D000172 ORTHO05D008216 3.3e-27 125.9 100 61.0
DCAR_021132 Daucus carota HOM05D000172 ORTHO05D008216 1.3e-26 124.0 112 55.4
AT1G04985 Arabidopsis thaliana HOM05D000172 ORTHO05D008216 2.8e-26 122.9 127 50.4
Pp3c2_22540 Physcomitrium patens HOM05D000172 ORTHO05D008216 2.8e-26 122.9 134 46.3
CDE07G1564 Ceratophyllum demersum HOM05D000172 ORTHO05D008216 8.2e-26 121.3 122 53.3
AagrBONN_evm.TU.Sc2ySwM_228.5805 Anthoceros agrestis HOM05D000172 ORTHO05D008216 1.8e-25 120.2 119 49.6
DCAR_021133 Daucus carota HOM05D000172 ORTHO05D008216 4.1e-25 119.0 87 64.4
Haze_12755 Corylus avellana HOM05D000172 ORTHO05D008216 5.3e-25 118.6 203 37.4
arahy.Tifrunner.gnm1.ann1.YE9ADV Arachis hypogaea HOM05D000172 ORTHO05D008216 6.9e-25 118.2 83 67.5
arahy.Tifrunner.gnm1.ann1.R9GX0H Arachis hypogaea HOM05D000172 ORTHO05D008216 1.9e-22 110.2 82 63.4
arahy.Tifrunner.gnm1.ann1.J9YZDG Arachis hypogaea HOM05D000172 ORTHO05D008216 4.4e-19 99.0 87 57.5
SMO111G0036 Selaginella moellendorffii HOM05D000172 ORTHO05D008216 1.3e-18 97.4 128 39.8
SMO358G0556 Selaginella moellendorffii HOM05D000172 ORTHO05D008216 1.3e-18 97.4 128 39.8
CBR_g23765 Chara braunii HOM05D000172 ORTHO05D008216 8.2e-18 94.7 106 46.2
Oeu003064.1 Olea europaea HOM05D000172 ORTHO05D008216 3.1e-17 92.8 68 64.7
SEGI_22849 Sequoiadendron giganteum HOM05D000172 ORTHO05D008216 1.3e-15 87.4 62 61.3
vmacro12152 Vaccinium macrocarpon HOM05D000172 ORTHO05D008216 1.2e-13 80.9 42 81.0
arahy.Tifrunner.gnm1.ann1.UD09X1 Arachis hypogaea HOM05D000172 ORTHO05D008216 4.7e-13 79.0 108 43.5
arahy.Tifrunner.gnm1.ann1.971VLJ Arachis hypogaea HOM05D000172 ORTHO05D008216 6.1e-13 78.6 135 38.5
arahy.Tifrunner.gnm1.ann1.7XK0ZA Arachis hypogaea HOM05D000172 ORTHO05D008216 8.0e-13 78.2 68 55.9
arahy.Tifrunner.gnm1.ann1.J7SF2C Arachis hypogaea HOM05D000172 ORTHO05D008216 1.8e-12 77.0 68 57.4
DCAR_021134 Daucus carota HOM05D000172 ORTHO05D008216 6.7e-12 75.1 57 61.4
arahy.Tifrunner.gnm1.ann1.XV84RB Arachis hypogaea HOM05D000172 ORTHO05D008216 7.4e-11 71.6 63 55.6
Hund04586 Selenicereus undatus HOM05D035355 ORTHO05D008216 3.1e-09 66.2 107 40.2
Hund04588 Selenicereus undatus HOM05D035355 ORTHO05D008216 3.1e-09 66.2 107 40.2
SHI10091 Sapria himalayana HOM05D000172 ORTHO05D008216 1.7e-07 60.5 62 46.8


User provided reference genes

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