Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g03357 Nelumbo nucifera HOM05D005176 ORTHO05D006482 6.1e-202 707.2 346 100.0
Cpa.g.sc152.62 Carica papaya HOM05D005176 ORTHO05D006482 3.3e-139 498.8 326 76.1
Oeu002752.3 Olea europaea HOM05D005176 ORTHO05D006482 1.1e-137 493.8 325 73.2
QL03p008214 Quercus lobata HOM05D005176 ORTHO05D006482 2.4e-137 492.7 304 78.6
Hma1.2p1_0660F.1_g197450 Hydrangea macrophylla HOM05D005176 ORTHO05D006482 3.1e-137 492.3 304 78.3
QL05p070074 Quercus lobata HOM05D005176 ORTHO05D006482 5.3e-137 491.5 304 78.6
TAR626G1813 Trochodendron aralioides HOM05D005176 ORTHO05D006482 5.3e-137 491.5 302 79.1
PGR042G2916 Punica granatum HOM05D005176 ORTHO05D006482 6.9e-137 491.1 311 76.5
Eucgr.E03960 Eucalyptus grandis HOM05D005176 ORTHO05D006482 9.0e-137 490.7 304 78.0
CANSAT56G2407 Cannabis sativa HOM05D005176 ORTHO05D006482 1.2e-136 490.3 304 78.3
Sabra11G0011400 Salix brachista HOM05D005176 ORTHO05D006482 4.5e-136 488.4 309 78.0
Sabra11G0013200 Salix brachista HOM05D005176 ORTHO05D006482 4.5e-136 488.4 309 78.0
Solyc11g011990.2 Solanum lycopersicum HOM05D005176 ORTHO05D006482 4.5e-136 488.4 308 76.0
PGSC0003DMG400013335 Solanum tuberosum HOM05D005176 ORTHO05D006482 7.6e-136 487.6 308 76.0
Sopen11g006800 Solanum pennellii HOM05D005176 ORTHO05D006482 1.3e-135 486.9 308 75.6
TWI63G1683 Tripterygium wilfordii HOM05D005176 ORTHO05D006482 2.9e-135 485.7 306 75.8
Dinv20117 Davidia involucrata HOM05D005176 ORTHO05D006482 6.5e-135 484.6 288 82.3
MD10G1328600 Malus domestica HOM05D005176 ORTHO05D006482 2.5e-134 482.6 307 74.6
Potri.011G021800 Populus trichocarpa HOM05D005176 ORTHO05D006482 2.5e-134 482.6 310 78.4
Rhsim13G0148600 Rhododendron simsii HOM05D005176 ORTHO05D006482 5.5e-134 481.5 307 75.2
CAN.G1186.9 Capsicum annuum HOM05D005176 ORTHO05D006482 1.2e-133 480.3 309 75.4
Prupe.4G013400 Prunus persica HOM05D005176 ORTHO05D006482 1.2e-133 480.3 311 75.6
CSS0003829 Camellia sinensis var. sinensis HOM05D005176 ORTHO05D006482 1.6e-133 479.9 294 79.3
SalBow8G4341 Salvia bowleyana HOM05D005176 ORTHO05D006482 2.1e-133 479.6 303 77.6
TWI38G1933 Tripterygium wilfordii HOM05D005176 ORTHO05D006482 2.7e-133 479.2 303 76.6
Gohir.A05G173800 Gossypium hirsutum HOM05D005176 ORTHO05D006482 4.6e-133 478.4 304 77.3
FvH4_3g01250 Fragaria vesca HOM05D005176 ORTHO05D006482 6.1e-133 478.0 298 77.5
Haze_06890 Corylus avellana HOM05D005176 ORTHO05D006482 1.0e-132 477.2 307 76.2
PSO832G1336 Papaver somniferum HOM05D005176 ORTHO05D006482 1.8e-132 476.5 334 71.9
Aqoxy1G04164 Aquilegia oxysepala HOM05D005176 ORTHO05D006482 2.3e-132 476.1 315 73.3
Thecc.06G230100 Theobroma cacao HOM05D005176 ORTHO05D006482 3.0e-132 475.7 307 75.9
COL.COLO4_31852 Corchorus olitorius HOM05D005176 ORTHO05D006482 8.8e-132 474.2 309 75.4
MELO3C021713.2 Cucumis melo HOM05D005176 ORTHO05D006482 8.8e-132 474.2 312 73.7
Migut.M01360 Erythranthe guttata HOM05D005176 ORTHO05D006482 8.8e-132 474.2 310 75.2
Gorai.009G182200 Gossypium raimondii HOM05D005176 ORTHO05D006482 8.8e-132 474.2 304 76.6
Lj1A1237T47 Lonicera japonica HOM05D005176 ORTHO05D006482 1.9e-131 473.0 316 73.4
FAN25G2381 Fragaria x ananassa HOM05D005176 ORTHO05D006482 3.3e-131 472.2 306 76.1
MSTRG.16005 Avicennia marina HOM05D005176 ORTHO05D006482 4.3e-131 471.9 312 73.4
arahy.Tifrunner.gnm1.ann1.E5J967 Arachis hypogaea HOM05D005176 ORTHO05D006482 5.7e-131 471.5 313 75.4
arahy.Tifrunner.gnm1.ann1.8PRB68 Arachis hypogaea HOM05D005176 ORTHO05D006482 1.3e-130 470.3 313 75.1
DCAR_004870 Daucus carota HOM05D005176 ORTHO05D006482 2.8e-130 469.2 334 70.4
Sc05g0009510 Simmondsia chinensis HOM05D005176 ORTHO05D006482 6.3e-130 468.0 325 73.2
RcHm_v2.0_Chr5g0001781 Rosa chinensis HOM05D005176 ORTHO05D006482 8.2e-130 467.6 316 72.8
Phvul.006G144800 Phaseolus vulgaris HOM05D005176 ORTHO05D006482 1.4e-129 466.8 307 75.2
vmacro03656 Vaccinium macrocarpon HOM05D005176 ORTHO05D006482 1.4e-129 466.8 318 72.3
EL10Ac8g20147 Beta vulgaris HOM05D005176 ORTHO05D006482 9.1e-129 464.2 313 74.1
Lsat_1_v5_gn_7_14460 Lactuca sativa HOM05D005176 ORTHO05D006482 9.1e-129 464.2 309 72.8
Ciclev10015546m.g Citrus clementina HOM05D005176 ORTHO05D006482 1.2e-128 463.8 313 73.8
CiPaw.09G100100 Carya illinoinensis HOM05D005176 ORTHO05D006482 2.6e-128 462.6 298 76.5
Glyma.09G008500 Glycine max HOM05D005176 ORTHO05D006482 3.4e-128 462.2 307 74.3
Glyma.15G112900 Glycine max HOM05D005176 ORTHO05D006482 5.9e-128 461.5 307 74.3
Lj6g0018145 Lotus japonicus HOM05D005176 ORTHO05D006482 7.7e-128 461.1 311 73.3
CsaV3_1G045890 Cucumis sativus L. HOM05D005176 ORTHO05D006482 1.0e-127 460.7 318 71.4
Thhalv10025624m.g Eutrema salsugineum HOM05D005176 ORTHO05D006482 3.8e-127 458.8 299 74.2
THA.LOC104812984 Tarenaya hassleriana HOM05D005176 ORTHO05D006482 5.0e-127 458.4 309 71.5
AL7G31370 Arabidopsis lyrata HOM05D005176 ORTHO05D006482 6.5e-127 458.0 300 75.0
Sp7g20380 Schrenkiella parvula HOM05D005176 ORTHO05D006482 6.5e-127 458.0 299 73.6
AUR62012769 Chenopodium quinoa HOM05D005176 ORTHO05D006482 1.1e-126 457.2 299 75.9
Psat1g177440 Pisum sativum HOM05D005176 ORTHO05D006482 1.1e-126 457.2 310 72.9
VMungo0540G1825 Vigna mungo HOM05D005176 ORTHO05D006482 2.5e-126 456.1 296 74.3
Manes.16G002000 Manihot esculenta HOM05D005176 ORTHO05D006482 3.2e-126 455.7 301 76.1
CARHR229150 Cardamine hirsuta HOM05D005176 ORTHO05D006482 4.2e-126 455.3 301 74.4
Gohir.D05G176800 Gossypium hirsutum HOM05D005176 ORTHO05D006482 4.2e-126 455.3 301 75.1
Hund21443 Selenicereus undatus HOM05D005176 ORTHO05D006482 4.2e-126 455.3 307 73.6
TPR.G13024 Trifolium pratense HOM05D005176 ORTHO05D006482 5.5e-126 454.9 299 73.6
BcaNung03749 Brassica carinata HOM05D005176 ORTHO05D006482 9.4e-126 454.1 300 74.7
Lalb_Chr15g0087861 Lupinus albus HOM05D005176 ORTHO05D006482 1.6e-125 453.4 306 71.9
Sabra04G0001100 Salix brachista HOM05D005176 ORTHO05D006482 1.6e-125 453.4 309 71.2
Medtr2g025140 Medicago truncatula HOM05D005176 ORTHO05D006482 6.1e-125 451.4 304 71.7
Cfa000134 Carpinus fangiana HOM05D005176 ORTHO05D006482 1.4e-124 450.3 274 79.9
Potri.004G002600 Populus trichocarpa HOM05D005176 ORTHO05D006482 1.4e-124 450.3 314 71.3
BcaC09g51146 Brassica carinata HOM05D005176 ORTHO05D006482 5.1e-124 448.4 300 73.3
BolC1t01601H Brassica oleracea HOM05D005176 ORTHO05D006482 6.7e-124 448.0 300 73.7
Carub.0007s1906 Capsella rubella HOM05D005176 ORTHO05D006482 6.7e-124 448.0 299 72.9
BraA01t01306Z Brassica rapa HOM05D005176 ORTHO05D006482 1.5e-123 446.8 300 73.3
Ca_00707_v3 Cicer arietinum L. HOM05D005176 ORTHO05D006482 4.4e-123 445.3 314 71.7
Cc09_g01070 Coffea canephora HOM05D005176 ORTHO05D006482 1.3e-122 443.7 286 76.6
HanXRQChr05g0129171 Helianthus annuus HOM05D005176 ORTHO05D006482 1.3e-122 443.7 303 69.6
unitig_748.g7945 Utricularia gibba HOM05D005176 ORTHO05D006482 1.3e-122 443.7 317 72.6
Actinidia26877 Actinidia chinensis HOM05D005176 ORTHO05D006482 4.8e-122 441.8 276 77.5
Sed0020812 Sechium edule HOM05D005176 ORTHO05D006482 4.8e-122 441.8 310 69.7
AT4G22260 Arabidopsis thaliana HOM05D005176 ORTHO05D006482 4.1e-121 438.7 261 78.9
Nitab4.5_0000143g0540 Nicotiana tabacum HOM05D005176 ORTHO05D006482 4.1e-121 438.7 308 69.8
Aa31LG6G4370 Aethionema arabicum HOM05D005176 ORTHO05D006482 1.2e-120 437.2 334 66.2
ATR1128G104 Amborella trichopoda HOM05D005176 ORTHO05D006482 2.0e-120 436.4 337 68.0
SGA_v2.0_scaffold7G03794 Striga asiatica HOM05D005176 ORTHO05D006482 2.6e-120 436.0 325 68.6
PSO210G5061 Papaver somniferum HOM05D005176 ORTHO05D006482 1.7e-119 433.3 317 69.1
C01p16510 Brassica napus HOM05D005176 ORTHO05D006482 3.8e-119 432.2 291 73.2
A01p13630 Brassica napus HOM05D005176 ORTHO05D006482 8.5e-119 431.0 291 73.2
Atru.chr10.2310 Acer truncatum HOM05D005176 ORTHO05D006482 9.4e-118 427.6 276 74.6
Os04g0668900 Oryza sativa ssp. japonica HOM05D005176 ORTHO05D006482 8.0e-117 424.5 254 78.3
Ah.09g234400 Amaranthus hybridus HOM05D005176 ORTHO05D006482 1.0e-116 424.1 311 68.8
TAR624G0457 Trochodendron aralioides HOM05D005176 ORTHO05D006482 3.3e-115 419.1 226 86.7
Eucgr.E03967 Eucalyptus grandis HOM05D005176 ORTHO05D006482 9.7e-115 417.5 304 70.4
Peaxi162Scf00063g00213 Petunia axillaris HOM05D005176 ORTHO05D006482 1.0e-111 407.5 315 65.1
MBI16_g26179_MAGBIO Magnolia biondii HOM05D005176 ORTHO05D006482 1.3e-111 407.1 344 61.9
Zm00001eb066910 Zea mays HOM05D005176 ORTHO05D006482 1.1e-110 404.1 338 60.1
CDE04G3552 Ceratophyllum demersum HOM05D005176 ORTHO05D006482 1.5e-110 403.7 317 64.4
MELO3C021708.2 Cucumis melo HOM05D005176 ORTHO05D006482 2.3e-108 396.4 357 58.8
MD05G1354300 Malus domestica HOM05D005176 ORTHO05D006482 3.7e-106 389.0 307 64.2
GSVIVG01006689001 Vitis vinifera HOM05D005176 ORTHO05D006482 2.0e-104 383.3 248 76.2
Nitab4.5_0001198g0240 Nicotiana tabacum HOM05D005176 ORTHO05D006482 2.7e-104 382.9 245 74.7
Pp3c1_30120 Physcomitrium patens HOM05D005176 ORTHO05D006482 4.5e-104 382.1 311 62.1
FAN21G2852 Fragaria x ananassa HOM05D005176 ORTHO05D006482 2.5e-102 376.3 295 65.8
SMO200G0146 Selaginella moellendorffii HOM05D005176 ORTHO05D006482 2.7e-101 372.9 270 65.6
Mapoly0050s0020 Marchantia polymorpha HOM05D005176 ORTHO05D006482 4.7e-101 372.1 259 68.3
Pp3c2_11230 Physcomitrium patens HOM05D005176 ORTHO05D006482 9.1e-97 357.8 225 75.6
CBR_g16017 Chara braunii HOM05D005176 ORTHO05D006482 4.0e-92 342.4 220 73.6
PSO675G3403 Papaver somniferum HOM05D005176 ORTHO05D006482 2.7e-88 329.7 246 67.5
ClCG01G009770 Citrullus lanatus HOM05D005176 ORTHO05D006482 5.9e-88 328.6 275 60.7
Zm00001eb066920 Zea mays HOM05D005176 ORTHO05D006482 7.3e-86 321.6 342 52.9
Hma1.2p1_2753F.1_g327930 Hydrangea macrophylla HOM05D005176 ORTHO05D006482 2.3e-76 290.0 221 67.4
Duzib160G0919 Durio zibethinus HOM05D005176 ORTHO05D006482 4.0e-76 289.3 304 53.0
Dinv13952 Davidia involucrata HOM05D005176 ORTHO05D006482 3.5e-72 276.2 182 75.3
FAN21G2340 Fragaria x ananassa HOM05D005176 ORTHO05D006482 1.2e-69 267.7 175 76.0
MCO02G133 Micromonas commoda HOM05D005176 ORTHO05D006482 2.1e-69 266.9 214 60.7
PRCOL_00003826 Prasinoderma coloniale HOM05D005176 ORTHO05D006482 2.1e-69 266.9 274 50.7
HPP92_004745 Vanilla planifolia HOM05D005176 ORTHO05D006482 8.1e-69 265.0 190 68.4
SMO147G0375 Selaginella moellendorffii HOM05D005176 ORTHO05D006482 8.6e-63 245.0 205 56.6
Pp3c27_6780 Physcomitrium patens HOM05D005176 ORTHO05D006482 7.3e-62 241.9 207 56.0
AagrBONN_evm.TU.Sc2ySwM_362.2521 Anthoceros agrestis HOM05D005176 ORTHO05D006482 5.8e-59 232.3 200 55.5
Cre07.g350750 Chlamydomonas reinhardtii HOM05D005176 ORTHO05D006482 1.7e-58 230.7 210 53.8
Mapoly0003s0157 Marchantia polymorpha HOM05D005176 ORTHO05D006482 1.9e-57 227.3 190 57.9
Cre03.g172500 Chlamydomonas reinhardtii HOM05D005176 ORTHO05D006482 2.7e-56 223.4 195 56.4
MCO02G403 Micromonas commoda HOM05D005176 ORTHO05D006482 2.9e-50 203.4 190 53.7
GSVIVG01007272001 Vitis vinifera HOM05D005176 ORTHO05D006482 3.8e-50 203.0 297 46.1
AUR62021889 Chenopodium quinoa HOM05D005176 ORTHO05D006482 3.5e-48 196.4 304 43.8
Duzib235G1273 Durio zibethinus HOM05D005176 ORTHO05D006482 3.3e-46 189.9 120 75.0
Hma1.2p1_0298F.1_g117340 Hydrangea macrophylla HOM05D005176 ORTHO05D006482 1.8e-39 167.5 116 73.3
PRCOL_00006497 Prasinoderma coloniale HOM05D005176 ORTHO05D006482 7.4e-38 162.2 145 53.1
AagrBONN_evm.TU.Sc2ySwM_344.415 Anthoceros agrestis HOM05D005176 ORTHO05D006482 1.6e-37 161.0 129 59.7
HPP92_004744 Vanilla planifolia HOM05D005176 ORTHO05D006482 2.8e-37 160.2 101 72.3
SEGI_26802 Sequoiadendron giganteum HOM05D005176 ORTHO05D006482 1.2e-35 154.8 107 65.4
QL03p008204 Quercus lobata HOM05D005176 ORTHO05D006482 2.1e-32 144.1 109 67.0
SEGI_01990 Sequoiadendron giganteum HOM05D005176 ORTHO05D006482 5.6e-30 136.0 70 88.6
A03p53390 Brassica napus HOM05D005176 ORTHO05D006482 2.3e-23 114.0 115 53.0
BraA03t14406Z Brassica rapa HOM05D005176 ORTHO05D006482 3.8e-18 96.7 100 54.0
arahy.Tifrunner.gnm1.ann1.E0HWS1 Arachis hypogaea HOM05D005176 ORTHO05D038931 6.5e-18 95.9 94 60.6
CBR_g12323 Chara braunii HOM05D005176 ORTHO05D006482 3.6e-16 90.1 65 63.1
Os03g0847500 Oryza sativa ssp. japonica HOM05D005176 ORTHO05D038931 2.3e-15 87.4 131 43.5
Eucgr.E03965 Eucalyptus grandis HOM05D005176 ORTHO05D006482 3.0e-15 87.0 50 78.0
Lj3g0010948 Lotus japonicus HOM05D005176 ORTHO05D006482 1.3e-13 81.6 54 75.9
CBR_g12320 Chara braunii HOM05D000019 ORTHO05D009492 3.4e-11 73.6 81 45.7
PSO447G0350 Papaver somniferum HOM05D001659 ORTHO05D001659 5.9e-11 72.8 191 28.8
FAN07G0088 Fragaria x ananassa HOM05D001659 ORTHO05D001659 7.7e-11 72.4 180 31.1
Gohir.D02G197300 Gossypium hirsutum HOM05D001659 ORTHO05D001659 1.7e-10 71.2 191 27.7
FvH4_4g05930 Fragaria vesca HOM05D001659 ORTHO05D001659 2.2e-10 70.9 191 30.4
FAN12G0150 Fragaria x ananassa HOM05D001659 ORTHO05D001659 2.2e-10 70.9 191 30.4
FAN17G3134 Fragaria x ananassa HOM05D001659 ORTHO05D001659 2.2e-10 70.9 191 30.4
RcHm_v2.0_Chr4g0397111 Rosa chinensis HOM05D001659 ORTHO05D001659 3.8e-10 70.1 201 29.4
Manes.06G012700 Manihot esculenta HOM05D001659 ORTHO05D001659 5.0e-10 69.7 191 26.7
Mapoly0009s0095 Marchantia polymorpha HOM05D001659 ORTHO05D001659 6.5e-10 69.3 182 28.0
Hund06382 Selenicereus undatus HOM05D001659 ORTHO05D001659 8.5e-10 68.9 210 26.2
BolC7t45661H Brassica oleracea HOM05D005176 ORTHO05D006482 1.1e-09 68.6 71 54.9
vmacro00077 Vaccinium macrocarpon HOM05D001659 ORTHO05D001659 1.1e-09 68.6 199 27.6
Pp3c2_12680 Physcomitrium patens HOM05D001659 ORTHO05D001659 3.2e-09 67.0 196 27.6
Cfa025176 Carpinus fangiana HOM05D002996 ORTHO05D003536 1.6e-08 64.7 183 30.1
Aa31LG2G13660 Aethionema arabicum HOM05D001659 ORTHO05D001659 4.7e-08 63.2 191 26.7
CDE04G3729 Ceratophyllum demersum HOM05D001659 ORTHO05D001659 1.4e-07 61.6 199 25.1
Lj7A163T40 Lonicera japonica HOM05D001659 ORTHO05D001659 1.8e-07 61.2 193 28.0
Cc08_g05330 Coffea canephora HOM05D001659 ORTHO05D001659 6.7e-07 59.3 180 28.3
Actinidia14737 Actinidia chinensis HOM05D001659 ORTHO05D001659 1.5e-06 58.2 179 26.8
HanXRQChr03g0081111 Helianthus annuus HOM05D001659 ORTHO05D001659 1.5e-06 58.2 191 24.6
HanXRQChr03g0081321 Helianthus annuus HOM05D001659 ORTHO05D001659 1.5e-06 58.2 191 24.6
PRCOL_00006496 Prasinoderma coloniale HOM05D005176 ORTHO05D006482 3.3e-06 57.0 53 56.6
HanXRQChr13g0411111 Helianthus annuus HOM05D001659 ORTHO05D001659 5.7e-06 56.2 196 25.5


User provided reference genes

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