Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g03300 Nelumbo nucifera HOM05D000040 ORTHO05D276455 2.8e-58 228.4 115 100.0
Nn3g17707 Nelumbo nucifera HOM05D000040 ORTHO05D009156 3.8e-23 111.7 153 45.1
Nn4g23716 Nelumbo nucifera HOM05D000040 ORTHO05D009156 1.0e-20 103.6 160 41.9
TAR371G0796 Trochodendron aralioides HOM05D000040 ORTHO05D009156 1.1e-17 93.6 152 39.5
Nn3g18042 Nelumbo nucifera HOM05D000040 ORTHO05D018336 1.8e-17 92.8 61 75.4
TAR629G2122 Trochodendron aralioides HOM05D000040 ORTHO05D009156 9.0e-17 90.5 154 37.0
Cfa018634 Carpinus fangiana HOM05D000040 ORTHO05D009156 2.9e-15 85.5 152 34.9
Ciclev10031705m.g Citrus clementina HOM05D000040 ORTHO05D009156 6.5e-15 84.3 161 32.3
Haze_17435 Corylus avellana HOM05D000040 ORTHO05D009156 8.5e-15 84.0 152 33.6
Dinv16510 Davidia involucrata HOM05D000040 ORTHO05D009156 1.4e-14 83.2 155 34.2
Sabra08G0087800 Salix brachista HOM05D000040 ORTHO05D009156 1.4e-14 83.2 161 32.3
Migut.E00295 Erythranthe guttata HOM05D000040 ORTHO05D009156 1.9e-14 82.8 157 34.4
Hma1.2p1_0406F.1_g146000 Hydrangea macrophylla HOM05D000040 ORTHO05D009156 3.2e-14 82.0 144 36.8
Potri.008G115900 Populus trichocarpa HOM05D000040 ORTHO05D009156 5.5e-14 81.3 161 34.8
Cfa004681 Carpinus fangiana HOM05D000040 ORTHO05D009156 7.2e-14 80.9 150 34.7
PGR119G2497 Punica granatum HOM05D000040 ORTHO05D009156 1.6e-13 79.7 156 32.1
DCAR_026714 Daucus carota HOM05D000040 ORTHO05D009156 2.1e-13 79.3 147 35.4
Sed0009686 Sechium edule HOM05D000040 ORTHO05D009156 2.1e-13 79.3 157 31.2
Actinidia38398 Actinidia chinensis HOM05D000040 ORTHO05D009156 2.7e-13 79.0 160 33.1
FAN22G0023 Fragaria x ananassa HOM05D000040 ORTHO05D009156 3.6e-13 78.6 150 34.0
PSO017G4494 Papaver somniferum HOM05D000040 ORTHO05D009156 4.6e-13 78.2 148 34.5
PSO478G4404 Papaver somniferum HOM05D000040 ORTHO05D009156 4.6e-13 78.2 148 34.5
EL10Ac6g14505 Beta vulgaris HOM05D000040 ORTHO05D009156 6.1e-13 77.8 152 33.6
Cfa020830 Carpinus fangiana HOM05D000040 ORTHO05D009156 6.1e-13 77.8 148 33.1
ECA233G6238 Erigeron canadensis HOM05D000040 ORTHO05D009156 6.1e-13 77.8 156 30.8
Thecc.04G139800 Theobroma cacao HOM05D000040 ORTHO05D009156 6.1e-13 77.8 158 32.3
CiPaw.15G003000 Carya illinoinensis HOM05D000040 ORTHO05D009156 1.0e-12 77.0 149 32.9
COL.COLO4_16203 Corchorus olitorius HOM05D000040 ORTHO05D009156 1.0e-12 77.0 158 32.3
Phvul.003G026700 Phaseolus vulgaris HOM05D000040 ORTHO05D009156 1.0e-12 77.0 152 33.6
MELO3C005359.2 Cucumis melo HOM05D000040 ORTHO05D009156 1.4e-12 76.6 162 32.1
Prupe.1G304800 Prunus persica HOM05D000040 ORTHO05D009156 1.4e-12 76.6 151 33.1
CsaV3_5G005980 Cucumis sativus L. HOM05D000040 ORTHO05D009156 1.8e-12 76.3 162 32.1
Thhalv10004188m.g Eutrema salsugineum HOM05D000040 ORTHO05D009156 1.8e-12 76.3 156 32.1
FAN17G2402 Fragaria x ananassa HOM05D000040 ORTHO05D009156 1.8e-12 76.3 150 33.3
Manes.06G072700 Manihot esculenta HOM05D000040 ORTHO05D009156 1.8e-12 76.3 152 30.9
AT3G25700 Arabidopsis thaliana HOM05D000040 ORTHO05D009156 2.3e-12 75.9 151 33.1
CARHR288560 Cardamine hirsuta HOM05D000040 ORTHO05D009156 2.3e-12 75.9 155 32.9
Cpa.g.sc1.229 Carica papaya HOM05D000040 ORTHO05D009156 3.9e-12 75.1 150 33.3
Lj6P766T28 Lonicera japonica HOM05D000040 ORTHO05D009156 3.9e-12 75.1 151 32.5
RcHm_v2.0_Chr4g0435911 Rosa chinensis HOM05D000040 ORTHO05D009156 3.9e-12 75.1 150 34.7
unitig_27.g25236 Utricularia gibba HOM05D000040 ORTHO05D009156 3.9e-12 75.1 156 33.3
Aqoxy3G00390 Aquilegia oxysepala HOM05D000040 ORTHO05D009156 5.1e-12 74.7 161 32.3
CANSAT64G0703 Cannabis sativa HOM05D000040 ORTHO05D009156 5.1e-12 74.7 162 30.2
Sp2g14960 Schrenkiella parvula HOM05D000040 ORTHO05D009156 5.1e-12 74.7 165 33.3
VMungo1215G1579 Vigna mungo HOM05D000040 ORTHO05D009156 5.1e-12 74.7 152 33.6
BcaB07g30257 Brassica carinata HOM05D000040 ORTHO05D009156 6.7e-12 74.3 153 32.7
arahy.Tifrunner.gnm1.ann1.69L8JH Arachis hypogaea HOM05D000040 ORTHO05D009156 8.8e-12 73.9 160 30.0
BcaB07g30258 Brassica carinata HOM05D000040 ORTHO05D009156 8.8e-12 73.9 154 32.5
AUR62035287 Chenopodium quinoa HOM05D000040 ORTHO05D009156 8.8e-12 73.9 148 35.1
BcaC06g33968 Brassica carinata HOM05D000040 ORTHO05D009156 1.1e-11 73.6 162 30.9
C07p34560 Brassica napus HOM05D000040 ORTHO05D009156 1.1e-11 73.6 162 30.9
BolC7t43988H Brassica oleracea HOM05D000040 ORTHO05D009156 1.1e-11 73.6 162 30.9
BraA02t08422Z Brassica rapa HOM05D000040 ORTHO05D009156 1.1e-11 73.6 154 32.5
CSS0001469 Camellia sinensis var. sinensis HOM05D000040 ORTHO05D009156 1.1e-11 73.6 149 32.9
CSS0038303 Camellia sinensis var. sinensis HOM05D000040 ORTHO05D009156 1.1e-11 73.6 149 32.9
AL5G14240 Arabidopsis lyrata HOM05D000040 ORTHO05D009156 1.5e-11 73.2 151 33.1
BcaC03g17285 Brassica carinata HOM05D000040 ORTHO05D009156 1.5e-11 73.2 152 32.2
BcaC03g17286 Brassica carinata HOM05D000040 ORTHO05D009156 1.5e-11 73.2 147 31.3
A02p34000 Brassica napus HOM05D000040 ORTHO05D009156 1.5e-11 73.2 154 32.5
C02p52320 Brassica napus HOM05D000040 ORTHO05D009156 1.5e-11 73.2 152 32.2
BolC2t11313H Brassica oleracea HOM05D000040 ORTHO05D009156 1.5e-11 73.2 152 32.2
HanXRQChr08g0214291 Helianthus annuus HOM05D000040 ORTHO05D009156 1.5e-11 73.2 158 31.0
MSTRG.2264 Avicennia marina HOM05D000040 ORTHO05D009156 2.0e-11 72.8 162 30.2
MBI12_g43773_MAGBIO Magnolia biondii HOM05D000040 ORTHO05D009156 2.0e-11 72.8 159 35.2
SEGI_01666 Sequoiadendron giganteum HOM05D000040 ORTHO05D009156 2.0e-11 72.8 161 30.4
Lalb_Chr10g0099671 Lupinus albus HOM05D000040 ORTHO05D009156 2.5e-11 72.4 154 31.8
FvH4_4g28140 Fragaria vesca HOM05D000040 ORTHO05D009156 4.3e-11 71.6 150 32.0
FAN12G1499 Fragaria x ananassa HOM05D000040 ORTHO05D009156 4.3e-11 71.6 150 32.0
PGSC0003DMG400000807 Solanum tuberosum HOM05D000040 ORTHO05D009156 4.3e-11 71.6 155 33.5
TWI79G0797 Tripterygium wilfordii HOM05D000040 ORTHO05D009156 4.3e-11 71.6 150 31.3
Aa31LG2G6610 Aethionema arabicum HOM05D000040 ORTHO05D009156 5.7e-11 71.2 155 32.9
Carub.0005s0352 Capsella rubella HOM05D000040 ORTHO05D009156 5.7e-11 71.2 154 31.8
Nitab4.5_0006098g0030 Nicotiana tabacum HOM05D000040 ORTHO05D009156 5.7e-11 71.2 154 32.5
Peaxi162Scf00367g00092 Petunia axillaris HOM05D000040 ORTHO05D009156 5.7e-11 71.2 151 33.1
Solyc05g009890.1 Solanum lycopersicum HOM05D000040 ORTHO05D009156 5.7e-11 71.2 155 32.9
Sopen05g005690 Solanum pennellii HOM05D000040 ORTHO05D009156 5.7e-11 71.2 155 32.9
Nitab4.5_0004838g0020 Nicotiana tabacum HOM05D000040 ORTHO05D009156 7.4e-11 70.9 154 33.1
A06p42590 Brassica napus HOM05D000040 ORTHO05D009156 9.7e-11 70.5 162 30.2
BraA06t27174Z Brassica rapa HOM05D000040 ORTHO05D009156 9.7e-11 70.5 162 30.2
Lsat_1_v5_gn_8_38360 Lactuca sativa HOM05D000040 ORTHO05D009156 9.7e-11 70.5 156 30.1
Atru.chr11.1361 Acer truncatum HOM05D000040 ORTHO05D009156 1.3e-10 70.1 162 31.5
MD16G1048900 Malus domestica HOM05D000040 ORTHO05D009156 1.3e-10 70.1 153 32.0
BcaC06g31123 Brassica carinata HOM05D000040 ORTHO05D009156 1.7e-10 69.7 152 30.3
FAN07G1954 Fragaria x ananassa HOM05D000040 ORTHO05D009156 2.2e-10 69.3 150 33.3
Oeu044630.1 Olea europaea HOM05D000040 ORTHO05D009156 2.2e-10 69.3 145 35.2
CAN.G184.86 Capsicum annuum HOM05D000040 ORTHO05D009156 2.8e-10 68.9 157 31.8
SEGI_06415 Sequoiadendron giganteum HOM05D000040 ORTHO05D018336 6.3e-10 67.8 116 37.1
CDE05G2534 Ceratophyllum demersum HOM05D004216 ORTHO05D004926 8.2e-10 67.4 161 28.6
MBI12_g33240_MAGBIO Magnolia biondii HOM05D000040 ORTHO05D009156 8.2e-10 67.4 61 54.1
ATR0564G475 Amborella trichopoda HOM05D000040 ORTHO05D009156 1.1e-09 67.0 145 31.0
SEGI_17670 Sequoiadendron giganteum HOM05D000040 ORTHO05D018336 1.4e-09 66.6 66 48.5
SEGI_36342 Sequoiadendron giganteum HOM05D000001 ORTHO05D018336 1.4e-09 66.6 119 34.5
Rhsim12G0081000 Rhododendron simsii HOM05D000040 ORTHO05D009156 1.8e-09 66.2 160 30.0
Cc11_g10660 Coffea canephora HOM05D000040 ORTHO05D009156 2.4e-09 65.9 156 29.5
QL01p001099 Quercus lobata HOM05D000040 ORTHO05D009156 2.4e-09 65.9 61 49.2
SEGI_20572 Sequoiadendron giganteum HOM05D000001 ORTHO05D018336 3.1e-09 65.5 131 32.1
Oeu024093.1 Olea europaea HOM05D000040 ORTHO05D009156 4.5e-08 61.6 54 53.7
Glyma.02G100800 Glycine max HOM05D000040 ORTHO05D009156 1.3e-07 60.1 61 45.9
SEGI_21814 Sequoiadendron giganteum HOM05D000001 ORTHO05D018336 1.7e-07 59.7 169 26.6
SEGI_09581 Sequoiadendron giganteum HOM05D000040 ORTHO05D009156 5.0e-07 58.2 53 49.1


User provided reference genes

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