Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g03279 Nelumbo nucifera HOM05D004336 ORTHO05D005367 0.0e+00 1100.9 556 100.0
Nn1g03281 Nelumbo nucifera HOM05D004336 ORTHO05D005367 0.0e+00 1100.9 556 100.0
TAR627G0502 Trochodendron aralioides HOM05D004336 ORTHO05D005367 5.5e-245 850.9 528 78.4
Dinv40824 Davidia involucrata HOM05D004336 ORTHO05D005367 3.4e-226 788.5 529 72.4
Aqoxy1G04042 Aquilegia oxysepala HOM05D004336 ORTHO05D005367 3.1e-219 765.4 533 70.2
Solyc07g065140.4 Solanum lycopersicum HOM05D004336 ORTHO05D005367 2.6e-218 762.3 539 68.5
PGSC0003DMG400022194 Solanum tuberosum HOM05D004336 ORTHO05D005367 7.5e-218 760.8 530 69.6
Sopen07g033360 Solanum pennellii HOM05D004336 ORTHO05D005367 2.2e-217 759.2 532 69.0
Nitab4.5_0001160g0150 Nicotiana tabacum HOM05D004336 ORTHO05D005367 1.6e-215 753.1 530 69.2
Nitab4.5_0010102g0040 Nicotiana tabacum HOM05D004336 ORTHO05D005367 1.6e-215 753.1 529 68.2
Aqoxy4G01189 Aquilegia oxysepala HOM05D004336 ORTHO05D005367 7.8e-215 750.7 529 71.8
Peaxi162Scf00285g00932 Petunia axillaris HOM05D004336 ORTHO05D005367 3.9e-214 748.4 528 68.4
CAN.G337.39 Capsicum annuum HOM05D004336 ORTHO05D005367 1.5e-213 746.5 540 67.4
CSS0041250 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 4.7e-212 741.5 529 68.8
CSS0047700 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 4.7e-212 741.5 529 68.8
CSS0014417 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 5.2e-211 738.0 529 68.4
CSS0044060 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 5.2e-211 738.0 529 68.4
Actinidia05042 Actinidia chinensis HOM05D004336 ORTHO05D005367 9.8e-210 733.8 528 66.9
CSS0013990 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 7.8e-207 724.2 530 67.4
CSS0031037 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 3.0e-206 722.2 530 67.2
Oeu057077.1 Olea europaea HOM05D004336 ORTHO05D005367 6.6e-206 721.1 549 64.8
Oeu057079.1 Olea europaea HOM05D004336 ORTHO05D005367 6.6e-206 721.1 549 64.8
Migut.H01779 Erythranthe guttata HOM05D004336 ORTHO05D005367 4.7e-204 714.9 520 67.7
MD03G1190200 Malus domestica HOM05D004336 ORTHO05D005367 6.2e-204 714.5 528 66.1
PSO302G0308 Papaver somniferum HOM05D004336 ORTHO05D005367 6.2e-204 714.5 530 67.9
Prupe.4G229800 Prunus persica HOM05D004336 ORTHO05D005367 1.8e-203 713.0 529 66.2
COL.COLO4_09762 Corchorus olitorius HOM05D004336 ORTHO05D005367 2.3e-203 712.6 531 68.2
TWI38G0059 Tripterygium wilfordii HOM05D004336 ORTHO05D005367 2.3e-203 712.6 528 67.2
Lj1A883T40 Lonicera japonica HOM05D004336 ORTHO05D005367 5.2e-203 711.4 520 65.8
Duzib170G1061 Durio zibethinus HOM05D004336 ORTHO05D005367 6.8e-203 711.1 538 66.2
TWI38G0192 Tripterygium wilfordii HOM05D004336 ORTHO05D005367 4.4e-202 708.4 528 66.1
Gorai.002G095200 Gossypium raimondii HOM05D004336 ORTHO05D005367 1.3e-201 706.8 534 68.0
Lj6g0007567 Lotus japonicus HOM05D004336 ORTHO05D005367 2.9e-201 705.7 530 67.0
SGA_v2.0_scaffold478G52227 Striga asiatica HOM05D004336 ORTHO05D005367 3.8e-201 705.3 522 66.7
Gohir.A01G085900 Gossypium hirsutum HOM05D004336 ORTHO05D005367 4.9e-201 704.9 534 67.4
MSTRG.13007 Avicennia marina HOM05D004336 ORTHO05D005367 6.4e-201 704.5 525 65.5
Actinidia00105 Actinidia chinensis HOM05D004336 ORTHO05D005367 1.9e-200 703.0 520 66.0
Thecc.07G024300 Theobroma cacao HOM05D004336 ORTHO05D005367 1.9e-200 703.0 528 66.3
Cfa020245 Carpinus fangiana HOM05D004336 ORTHO05D005367 3.2e-200 702.2 533 65.9
PGR083G2301 Punica granatum HOM05D004336 ORTHO05D005367 4.1e-200 701.8 533 64.0
HanXRQChr17g0546171 Helianthus annuus HOM05D004336 ORTHO05D005367 7.1e-200 701.0 529 63.7
Lsat_1_v5_gn_7_114040 Lactuca sativa HOM05D004336 ORTHO05D005367 9.2e-200 700.7 524 64.7
RcHm_v2.0_Chr5g0041971 Rosa chinensis HOM05D004336 ORTHO05D005367 9.2e-200 700.7 525 64.4
Atru.chr2.3600_Atru.chr2.3601 Acer truncatum HOM05D004336 ORTHO05D005367 2.7e-199 699.1 534 68.2
Haze_09771 Corylus avellana HOM05D004336 ORTHO05D005367 4.6e-199 698.4 530 65.8
PSO210G4424 Papaver somniferum HOM05D004336 ORTHO05D005367 4.6e-199 698.4 535 65.6
ClCG09G020990 Citrullus lanatus HOM05D004336 ORTHO05D005367 1.3e-198 696.8 528 65.7
arahy.Tifrunner.gnm1.ann1.KR0ZCF Arachis hypogaea HOM05D004336 ORTHO05D005367 1.9e-197 693.0 532 63.7
CiPaw.11G199400 Carya illinoinensis HOM05D004336 ORTHO05D005367 1.6e-196 689.9 527 63.9
CsaV3_7G018720 Cucumis sativus L. HOM05D004336 ORTHO05D005367 1.6e-196 689.9 528 64.6
arahy.Tifrunner.gnm1.ann1.K6BPDT Arachis hypogaea HOM05D004336 ORTHO05D005367 4.7e-196 688.3 538 63.2
FvH4_3g23790 Fragaria vesca HOM05D004336 ORTHO05D005367 4.7e-196 688.3 525 64.0
FAN11G0890 Fragaria x ananassa HOM05D004336 ORTHO05D005367 4.7e-196 688.3 525 64.2
FAN25G1677 Fragaria x ananassa HOM05D004336 ORTHO05D005367 4.7e-196 688.3 525 64.0
Lj8A175T74 Lonicera japonica HOM05D004336 ORTHO05D005367 1.8e-195 686.4 502 66.5
MBI19_g06156_MAGBIO Magnolia biondii HOM05D004336 ORTHO05D005367 1.8e-195 686.4 532 65.8
Glyma.18G085100 Glycine max HOM05D004336 ORTHO05D005367 2.4e-195 686.0 529 64.1
Potri.001G360600 Populus trichocarpa HOM05D004336 ORTHO05D005367 6.9e-195 684.5 531 66.3
vmacro11570 Vaccinium macrocarpon HOM05D004336 ORTHO05D005367 6.9e-195 684.5 509 66.4
Manes.15G064500 Manihot esculenta HOM05D004336 ORTHO05D005367 2.6e-194 682.6 543 61.1
Cpa.g.sc12.209 Carica papaya HOM05D004336 ORTHO05D005367 7.6e-194 681.0 536 65.1
Phvul.006G051000 Phaseolus vulgaris HOM05D004336 ORTHO05D005367 4.9e-193 678.3 529 65.0
Lalb_Chr18g0050361 Lupinus albus HOM05D004336 ORTHO05D005367 2.4e-192 676.0 534 65.5
Ca_14783_v3 Cicer arietinum L. HOM05D004336 ORTHO05D005367 1.2e-191 673.7 523 63.9
FAN21G2219 Fragaria x ananassa HOM05D004336 ORTHO05D005367 1.6e-191 673.3 538 62.1
Sed0027079 Sechium edule HOM05D004336 ORTHO05D005367 3.5e-191 672.2 528 63.3
Glyma.08G324900 Glycine max HOM05D004336 ORTHO05D005367 4.6e-191 671.8 532 63.3
Gohir.D01G072200 Gossypium hirsutum HOM05D004336 ORTHO05D005367 1.0e-190 670.6 534 65.9
Glyma.08G324800 Glycine max HOM05D004336 ORTHO05D005367 1.7e-190 669.8 528 61.7
Glyma.18G085200 Glycine max HOM05D004336 ORTHO05D005367 4.3e-189 665.2 528 61.4
Medtr3g055690 Medicago truncatula HOM05D004336 ORTHO05D005367 9.6e-189 664.1 526 62.2
VMungo0540G2288 Vigna mungo HOM05D004336 ORTHO05D005367 1.3e-188 663.7 561 62.0
Sed0018719 Sechium edule HOM05D004336 ORTHO05D005367 2.1e-188 662.9 525 63.8
DCAR_016633 Daucus carota HOM05D004336 ORTHO05D005367 8.1e-188 661.0 520 61.9
Eucgr.F00628 Eucalyptus grandis HOM05D004336 ORTHO05D005367 5.3e-187 658.3 541 59.5
Eucgr.F03516 Eucalyptus grandis HOM05D004336 ORTHO05D005367 1.2e-186 657.1 518 63.5
Psat5g171920 Pisum sativum HOM05D004336 ORTHO05D005367 2.6e-186 656.0 529 63.1
Sp6g17380 Schrenkiella parvula HOM05D004336 ORTHO05D005367 3.4e-186 655.6 559 60.1
Aa31LG3G11440 Aethionema arabicum HOM05D004336 ORTHO05D005367 2.2e-185 652.9 550 60.2
Thhalv10013238m.g Eutrema salsugineum HOM05D004336 ORTHO05D005367 2.4e-184 649.4 559 59.2
AT5G55500 Arabidopsis thaliana HOM05D004336 ORTHO05D005367 3.2e-184 649.0 561 59.4
AL8G31030 Arabidopsis lyrata HOM05D004336 ORTHO05D005367 1.2e-183 647.1 566 58.3
A03p14020 Brassica napus HOM05D004336 ORTHO05D005367 4.6e-183 645.2 557 59.8
Carub.0008s1585 Capsella rubella HOM05D004336 ORTHO05D005367 7.9e-183 644.4 565 60.5
CARHR268810 Cardamine hirsuta HOM05D004336 ORTHO05D005367 1.3e-182 643.7 569 58.5
BolC3t14066H Brassica oleracea HOM05D004336 ORTHO05D005367 3.0e-182 642.5 558 58.6
Gohir.A04G010200 Gossypium hirsutum HOM05D004336 ORTHO05D005367 3.9e-182 642.1 534 60.1
BraA03t10701Z Brassica rapa HOM05D004336 ORTHO05D005367 6.7e-182 641.3 555 59.1
Gorai.009G445600 Gossypium raimondii HOM05D004336 ORTHO05D005367 8.7e-182 641.0 533 60.6
HPP92_018937 Vanilla planifolia HOM05D004336 ORTHO05D005367 1.5e-181 640.2 529 59.2
C03p16460 Brassica napus HOM05D004336 ORTHO05D005367 1.9e-181 639.8 554 58.1
MELO3C024890.2 Cucumis melo HOM05D004336 ORTHO05D005367 4.3e-181 638.6 528 61.7
Gohir.D05G377800 Gossypium hirsutum HOM05D004336 ORTHO05D005367 4.3e-181 638.6 533 59.8
ATR0712G174 Amborella trichopoda HOM05D004336 ORTHO05D005367 1.3e-180 637.1 466 65.2
HPP92_018936 Vanilla planifolia HOM05D004336 ORTHO05D005367 1.6e-180 636.7 462 63.6
unitig_8.g4786 Utricularia gibba HOM05D004336 ORTHO05D005367 1.8e-179 633.3 532 59.6
Duzib213G0745 Durio zibethinus HOM05D004336 ORTHO05D005367 2.4e-176 622.9 531 61.0
THA.LOC104811644 Tarenaya hassleriana HOM05D004336 ORTHO05D005367 2.3e-174 616.3 547 56.5
Ciclev10008121m.g Citrus clementina HOM05D004336 ORTHO05D005367 7.4e-173 611.3 534 60.1
EL10Ac4g07633 Beta vulgaris HOM05D004336 ORTHO05D005367 6.2e-172 608.2 526 57.4
Ah.04g166390 Amaranthus hybridus HOM05D004336 ORTHO05D005367 8.1e-172 607.8 465 62.8
Hund01925 Selenicereus undatus HOM05D004336 ORTHO05D005367 8.1e-172 607.8 533 59.7
Os08g0503800 Oryza sativa ssp. japonica HOM05D004336 ORTHO05D005367 2.4e-171 606.3 463 63.5
BcaC01g06371 Brassica carinata HOM05D004336 ORTHO05D005367 2.0e-170 603.2 548 56.8
Sc03g0008140 Simmondsia chinensis HOM05D004336 ORTHO05D005367 3.4e-170 602.4 413 68.8
Hund23166 Selenicereus undatus HOM05D004336 ORTHO05D005367 2.2e-169 599.7 486 60.7
Rhsim06G0225600 Rhododendron simsii HOM05D004336 ORTHO05D005367 4.1e-163 578.9 446 64.6
TPR.G23588 Trifolium pratense HOM05D004336 ORTHO05D005367 9.0e-163 577.8 393 69.5
ECA236G3940 Erigeron canadensis HOM05D004336 ORTHO05D005367 2.1e-159 566.6 485 59.0
SHI26554 Sapria himalayana HOM05D004336 ORTHO05D005367 1.6e-156 557.0 445 59.3
AUR62040678 Chenopodium quinoa HOM05D004336 ORTHO05D005367 6.5e-153 545.0 383 67.4
GSVIVG01037759001 Vitis vinifera HOM05D004336 ORTHO05D005367 8.8e-150 534.6 311 80.1
EL10Ac4g07632 Beta vulgaris HOM05D004336 ORTHO05D005367 9.1e-147 524.6 456 56.8
A10p12600 Brassica napus HOM05D004336 ORTHO05D005367 1.2e-146 524.2 427 60.7
Cc05_g14530 Coffea canephora HOM05D004336 ORTHO05D005367 5.7e-141 505.4 311 74.9
QL08p008529 Quercus lobata HOM05D004336 ORTHO05D005367 2.4e-139 500.0 295 78.3
RcHm_v2.0_Chr5g0041921 Rosa chinensis HOM05D004336 ORTHO05D005367 2.2e-137 493.4 303 75.2
CDE07G1634 Ceratophyllum demersum HOM05D004336 ORTHO05D005367 1.0e-134 484.6 311 71.4
AUR62015931 Chenopodium quinoa HOM05D004336 ORTHO05D005367 3.7e-124 449.5 383 58.5
Mapoly0007s0065 Marchantia polymorpha HOM05D004336 ORTHO05D005367 3.1e-123 446.4 472 45.8
Ah.06g181060 Amaranthus hybridus HOM05D004336 ORTHO05D005367 1.2e-119 434.5 288 68.8
Pp3c14_26580 Physcomitrium patens HOM05D004336 ORTHO05D005367 7.5e-117 425.2 523 43.2
SMO347G0076 Selaginella moellendorffii HOM05D004336 ORTHO05D005367 4.3e-112 409.5 468 44.2
Sabra16G0237900 Salix brachista HOM05D004336 ORTHO05D005367 1.4e-107 394.4 246 76.0
Oeu019622.1 Olea europaea HOM05D004336 ORTHO05D005367 2.0e-106 390.6 241 75.5
QL04p097747 Quercus lobata HOM05D004336 ORTHO05D005367 8.6e-105 385.2 238 76.1
BcaB08g35906 Brassica carinata HOM05D004336 ORTHO05D005367 2.2e-92 344.0 498 42.8
RcHm_v2.0_Chr5g0080011 Rosa chinensis HOM05D004336 ORTHO05D005367 3.8e-84 316.6 198 76.3
BraA10t43362Z Brassica rapa HOM05D004336 ORTHO05D005367 2.4e-83 313.9 339 51.9
FvH4_3g12320 Fragaria vesca HOM05D004336 ORTHO05D005367 1.7e-81 307.8 201 71.6
Zm00001eb034690 Zea mays HOM05D004336 ORTHO05D005367 1.1e-80 305.1 216 65.7
MD11G1206800 Malus domestica HOM05D004336 ORTHO05D005367 2.6e-77 293.9 232 60.8
BcaB01g04318 Brassica carinata HOM05D004336 ORTHO05D005367 1.3e-68 265.0 270 54.4
MD11G1206700 Malus domestica HOM05D004336 ORTHO05D005367 3.3e-64 250.4 166 71.1
BolC9t57481H Brassica oleracea HOM05D004336 ORTHO05D005367 7.6e-53 212.6 202 55.4
C09p46150 Brassica napus HOM05D004336 ORTHO05D005367 4.9e-52 209.9 202 55.9
A04p06990 Brassica napus HOM05D004336 ORTHO05D005367 1.9e-51 208.0 129 71.3
BraA04t16398Z Brassica rapa HOM05D004336 ORTHO05D005367 1.9e-51 208.0 129 71.3
QL08p008521 Quercus lobata HOM05D004336 ORTHO05D005367 9.3e-51 205.7 237 45.6
C09p46160 Brassica napus HOM05D004336 ORTHO05D005367 1.2e-50 205.3 157 63.7
A03p66870 Brassica napus HOM05D004336 ORTHO05D005367 2.7e-50 204.1 124 73.4
AagrBONN_evm.TU.Sc2ySwM_228.1049 Anthoceros agrestis HOM05D004336 ORTHO05D005367 1.1e-46 192.2 189 49.7
CBR_g22021 Chara braunii HOM05D000019 ORTHO05D000048 1.2e-45 188.7 412 28.2
SEGI_14116 Sequoiadendron giganteum HOM05D004336 ORTHO05D005367 2.1e-42 177.9 239 41.4
Eucgr.I00174 Eucalyptus grandis HOM05D004336 ORTHO05D005367 1.5e-40 171.8 108 71.3
BraA01t02793Z Brassica rapa HOM05D004336 ORTHO05D004660 1.8e-38 164.9 106 67.9
MSTRG.14468 Avicennia marina HOM05D004336 ORTHO05D005367 5.3e-38 163.3 161 51.6
Ah.06g181050 Amaranthus hybridus HOM05D004336 ORTHO05D005367 2.9e-36 157.5 183 44.8
SHI26544 Sapria himalayana HOM05D004336 ORTHO05D005367 6.5e-36 156.4 165 48.5
SHI40288 Sapria himalayana HOM05D004336 ORTHO05D005367 1.4e-35 155.2 175 48.0
SHI22211 Sapria himalayana HOM05D004336 ORTHO05D005367 2.3e-33 147.9 280 35.4
TAR627G0477 Trochodendron aralioides HOM05D000054 ORTHO05D000171 2.3e-33 147.9 98 74.5
BcaC04g20358 Brassica carinata HOM05D003513 ORTHO05D004660 2.0e-29 134.8 76 76.3
BolC9t57326H Brassica oleracea HOM05D004336 ORTHO05D005367 2.0e-29 134.8 76 76.3
CDE07G0680 Ceratophyllum demersum HOM05D004336 ORTHO05D005367 5.9e-29 133.3 197 41.6
AL8G29720 Arabidopsis lyrata HOM05D004336 ORTHO05D005367 2.5e-27 127.9 100 66.0
SHI48138 Sapria himalayana HOM05D004336 ORTHO05D005367 4.2e-27 127.1 105 56.2
BcaB05g23098 Brassica carinata HOM05D004336 ORTHO05D005367 2.3e-25 121.3 85 64.7
RcHm_v2.0_Chr5g0079391 Rosa chinensis HOM05D004336 ORTHO05D005367 2.2e-20 104.8 106 49.1
BcaB01g04317 Brassica carinata HOM05D004336 ORTHO05D005367 1.8e-17 95.1 72 63.9
A03p61430 Brassica napus HOM05D003513 ORTHO05D004660 2.6e-16 91.3 59 67.8
HanXRQChr04g0109771 Helianthus annuus HOM05D004336 ORTHO05D005367 4.8e-15 87.0 91 47.3
AagrBONN_evm.TU.Sc2ySwM_228.1050 Anthoceros agrestis HOM05D004336 ORTHO05D005367 1.2e-10 72.4 165 30.9
TAR612G0001 Trochodendron aralioides HOM05D000054 ORTHO05D000171 1.7e-07 62.0 34 91.2


User provided reference genes

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