Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g03214 Nelumbo nucifera HOM05D004073 ORTHO05D004785 1.6e-118 429.5 228 100.0
Nn1g07482 Nelumbo nucifera HOM05D004073 ORTHO05D004785 5.8e-84 314.7 216 77.8
TAR629G1249 Trochodendron aralioides HOM05D004073 ORTHO05D004785 2.0e-76 289.7 216 72.7
TAR629G1509 Trochodendron aralioides HOM05D004073 ORTHO05D004785 1.2e-73 280.4 213 69.0
GSVIVG01014646001 Vitis vinifera HOM05D004073 ORTHO05D004785 7.9e-73 277.7 217 71.9
Dinv40845 Davidia involucrata HOM05D004073 ORTHO05D004785 2.0e-71 273.1 216 67.1
Dinv10322 Davidia involucrata HOM05D004073 ORTHO05D004785 1.7e-67 260.0 211 69.2
Hma1.2p1_0036F.1_g022540 Hydrangea macrophylla HOM05D004073 ORTHO05D004785 2.9e-67 259.2 216 68.1
MBI16_g14388_MAGBIO Magnolia biondii HOM05D004073 ORTHO05D004785 1.9e-66 256.5 224 64.3
Ciclev10008892m.g Citrus clementina HOM05D004073 ORTHO05D004785 1.0e-64 250.8 218 67.4
CiPaw.01G209600 Carya illinoinensis HOM05D004073 ORTHO05D004785 1.8e-64 250.0 217 64.1
Prupe.4G240000 Prunus persica HOM05D004073 ORTHO05D004785 8.8e-64 247.7 216 61.6
CSS0000121 Camellia sinensis var. sinensis HOM05D004073 ORTHO05D004785 5.7e-63 245.0 217 65.9
Sopen04g025530 Solanum pennellii HOM05D004073 ORTHO05D004785 1.7e-62 243.4 218 60.1
Cfa002798 Carpinus fangiana HOM05D004073 ORTHO05D004785 4.8e-62 241.9 207 65.2
CiPaw.02G129700 Carya illinoinensis HOM05D004073 ORTHO05D004785 4.8e-62 241.9 217 64.1
Solyc04g056610.3 Solanum lycopersicum HOM05D004073 ORTHO05D004785 6.3e-62 241.5 218 59.6
Duzib213G1048 Durio zibethinus HOM05D004073 ORTHO05D004785 8.2e-62 241.1 217 65.4
PSO302G0019 Papaver somniferum HOM05D004073 ORTHO05D004785 8.2e-62 241.1 218 59.2
TWI39G0963 Tripterygium wilfordii HOM05D004073 ORTHO05D004785 1.1e-61 240.7 211 61.1
PSO210G1542 Papaver somniferum HOM05D004073 ORTHO05D004785 2.4e-61 239.6 220 59.1
PGSC0003DMG400010530 Solanum tuberosum HOM05D004073 ORTHO05D004785 2.4e-61 239.6 218 59.6
Peaxi162Scf00529g00814 Petunia axillaris HOM05D004073 ORTHO05D004785 3.1e-61 239.2 212 61.3
Lj3g0026799 Lotus japonicus HOM05D004073 ORTHO05D004785 1.2e-60 237.3 216 63.0
MD11G1201600 Malus domestica HOM05D004073 ORTHO05D004785 1.2e-60 237.3 217 59.9
MELO3C024919.2 Cucumis melo HOM05D004073 ORTHO05D004785 2.0e-60 236.5 208 62.5
Rhsim04G0013700 Rhododendron simsii HOM05D004073 ORTHO05D004785 3.5e-60 235.7 208 63.5
Nitab4.5_0000083g0020 Nicotiana tabacum HOM05D004073 ORTHO05D004785 5.9e-60 235.0 218 60.1
QL08p004797 Quercus lobata HOM05D004073 ORTHO05D004785 5.9e-60 235.0 217 63.1
Haze_25099 Corylus avellana HOM05D004073 ORTHO05D004785 1.0e-59 234.2 207 63.8
Lsat_1_v5_gn_5_1501 Lactuca sativa HOM05D004073 ORTHO05D004785 1.3e-59 233.8 218 60.1
Nitab4.5_0000276g0150 Nicotiana tabacum HOM05D004073 ORTHO05D004785 1.3e-59 233.8 218 60.1
Duzib170G0711 Durio zibethinus HOM05D004073 ORTHO05D004785 2.2e-59 233.0 213 64.8
Thecc.07G016400 Theobroma cacao HOM05D004073 ORTHO05D004785 2.2e-59 233.0 208 64.9
MD00G1099100 Malus domestica HOM05D004073 ORTHO05D004785 2.9e-59 232.6 217 58.5
Cc02_g24500 Coffea canephora HOM05D004073 ORTHO05D004785 6.5e-59 231.5 222 56.8
Manes.03G140000 Manihot esculenta HOM05D004073 ORTHO05D004785 6.5e-59 231.5 220 59.5
Gohir.A13G133800 Gossypium hirsutum HOM05D004073 ORTHO05D004785 1.5e-58 230.3 223 61.4
ClCG09G021180 Citrullus lanatus HOM05D004073 ORTHO05D004785 1.9e-58 229.9 208 61.1
HanXRQChr05g0159911 Helianthus annuus HOM05D004073 ORTHO05D004785 3.2e-58 229.2 214 58.4
RcHm_v2.0_Chr5g0053951 Rosa chinensis HOM05D004073 ORTHO05D004785 5.5e-58 228.4 222 55.4
CSS0032183 Camellia sinensis var. sinensis HOM05D004073 ORTHO05D004785 1.6e-57 226.9 217 60.4
Gohir.A01G090300 Gossypium hirsutum HOM05D004073 ORTHO05D004785 1.6e-57 226.9 217 62.2
THA.LOC104817703 Tarenaya hassleriana HOM05D004073 ORTHO05D004785 6.1e-57 224.9 208 63.9
PGSC0003DMG400003290 Solanum tuberosum HOM05D004073 ORTHO05D004785 1.4e-56 223.8 208 58.7
Sed0023598 Sechium edule HOM05D004073 ORTHO05D004785 1.8e-56 223.4 209 60.3
Gorai.013G153800 Gossypium raimondii HOM05D004073 ORTHO05D004785 3.0e-56 222.6 223 61.0
Gorai.002G098800 Gossypium raimondii HOM05D004073 ORTHO05D004785 3.9e-56 222.2 212 62.7
Sabra16G0239500 Salix brachista HOM05D004073 ORTHO05D004785 5.2e-56 221.9 216 58.8
Sed0026445 Sechium edule HOM05D004073 ORTHO05D004785 8.8e-56 221.1 222 57.2
CANSAT01G2739 Cannabis sativa HOM05D004073 ORTHO05D004785 1.1e-55 220.7 216 56.9
Gohir.D01G075600 Gossypium hirsutum HOM05D004073 ORTHO05D004785 2.0e-55 219.9 212 62.3
CAN.G217.4 Capsicum annuum HOM05D004073 ORTHO05D004785 4.4e-55 218.8 210 59.0
Ca_04178_v3 Cicer arietinum L. HOM05D004073 ORTHO05D004785 1.3e-54 217.2 216 60.6
Potri.001G366000 Populus trichocarpa HOM05D004073 ORTHO05D004785 2.2e-54 216.5 216 57.4
FvH4_3g29460 Fragaria vesca HOM05D004073 ORTHO05D004785 3.7e-54 215.7 216 52.8
RcHm_v2.0_Chr5g0077271 Rosa chinensis HOM05D004073 ORTHO05D004785 1.8e-53 213.4 216 53.7
vmacro09656 Vaccinium macrocarpon HOM05D004073 ORTHO05D004785 3.1e-53 212.6 257 55.3
MSTRG.20573 Avicennia marina HOM05D004073 ORTHO05D004785 4.1e-53 212.2 207 56.5
PGR083G0661 Punica granatum HOM05D004073 ORTHO05D004785 4.1e-53 212.2 214 58.9
CDE04G2763 Ceratophyllum demersum HOM05D004073 ORTHO05D004785 7.0e-53 211.5 212 54.2
Manes.15G061500 Manihot esculenta HOM05D004073 ORTHO05D004785 9.1e-53 211.1 216 54.2
Migut.B01283 Erythranthe guttata HOM05D004073 ORTHO05D004785 1.2e-52 210.7 218 55.5
FAN21G2863 Fragaria x ananassa HOM05D004073 ORTHO05D004785 1.2e-52 210.7 216 51.4
Glyma.02G067000 Glycine max HOM05D004073 ORTHO05D004785 1.2e-52 210.7 218 59.6
Phvul.004G069300 Phaseolus vulgaris HOM05D004073 ORTHO05D004785 1.2e-52 210.7 222 58.1
Eucgr.F02061 Eucalyptus grandis HOM05D004073 ORTHO05D004785 1.6e-52 210.3 213 54.9
FAN11G2481 Fragaria x ananassa HOM05D004073 ORTHO05D004785 2.6e-52 209.5 216 52.3
Glyma.16G148100 Glycine max HOM05D004073 ORTHO05D004785 2.6e-52 209.5 218 59.2
arahy.Tifrunner.gnm1.ann1.9SIV6F Arachis hypogaea HOM05D004073 ORTHO05D004785 3.5e-52 209.1 217 56.7
Gohir.D13G137200 Gossypium hirsutum HOM05D004073 ORTHO05D004785 3.5e-52 209.1 217 59.0
Sc03g0011140 Simmondsia chinensis HOM05D004073 ORTHO05D004785 5.9e-52 208.4 216 52.3
Gohir.D06G153600 Gossypium hirsutum HOM05D004073 ORTHO05D004785 1.0e-51 207.6 203 64.5
Gorai.013G151000 Gossypium raimondii HOM05D004073 ORTHO05D004785 1.0e-51 207.6 203 63.1
CDE06G2507 Ceratophyllum demersum HOM05D004073 ORTHO05D004785 1.7e-51 206.8 212 53.3
Oeu005967.2 Olea europaea HOM05D004073 ORTHO05D004785 5.0e-51 205.3 270 50.0
HanXRQChr07g0195741 Helianthus annuus HOM05D004073 ORTHO05D004785 8.5e-51 204.5 220 53.6
Medtr4g086170 Medicago truncatula HOM05D004073 ORTHO05D004785 1.1e-50 204.1 223 55.2
arahy.Tifrunner.gnm1.ann1.AHDC81 Arachis hypogaea HOM05D004073 ORTHO05D004785 1.9e-50 203.4 212 56.1
Hund23121 Selenicereus undatus HOM05D004073 ORTHO05D004785 3.2e-50 202.6 220 53.6
FAN25G0469 Fragaria x ananassa HOM05D004073 ORTHO05D004785 4.2e-50 202.2 216 51.9
CSS0006286 Camellia sinensis var. sinensis HOM05D004073 ORTHO05D004785 9.4e-50 201.1 159 67.3
Lalb_Chr01g0018421 Lupinus albus HOM05D004073 ORTHO05D004785 9.4e-50 201.1 210 61.0
HPP92_020483 Vanilla planifolia HOM05D004073 ORTHO05D004785 9.4e-50 201.1 231 53.2
Lalb_Chr15g0083341 Lupinus albus HOM05D004073 ORTHO05D004785 2.1e-49 199.9 218 51.4
VMungo0464G1872 Vigna mungo HOM05D004073 ORTHO05D004785 2.7e-49 199.5 219 56.6
AUR62017071 Chenopodium quinoa HOM05D004073 ORTHO05D004785 8.0e-49 198.0 220 52.7
AUR62036423 Chenopodium quinoa HOM05D004073 ORTHO05D004785 1.0e-48 197.6 221 52.9
AUR62036429 Chenopodium quinoa HOM05D004073 ORTHO05D004785 2.3e-48 196.4 221 52.5
Gorai.002G215300 Gossypium raimondii HOM05D004073 ORTHO05D004785 2.3e-48 196.4 203 57.1
Lj1A888G37 Lonicera japonica HOM05D004073 ORTHO05D004785 5.2e-48 195.3 161 64.6
TPR.G8724 Trifolium pratense HOM05D004073 ORTHO05D004785 3.4e-47 192.6 211 56.9
Lj8A177T32 Lonicera japonica HOM05D004073 ORTHO05D004785 4.4e-47 192.2 158 62.7
Hund01907 Selenicereus undatus HOM05D004073 ORTHO05D004785 9.8e-47 191.0 226 50.9
Psat1g055880 Pisum sativum HOM05D004073 ORTHO05D004785 1.7e-46 190.3 216 56.9
Haze_03265 Corylus avellana HOM05D004073 ORTHO05D004785 2.2e-46 189.9 139 70.5
SalBow6G4871 Salvia bowleyana HOM05D004073 ORTHO05D004785 6.3e-46 188.3 211 50.2
unitig_26.g10112 Utricularia gibba HOM05D004073 ORTHO05D004785 6.3e-46 188.3 216 50.5
AT5G55610 Arabidopsis thaliana HOM05D004073 ORTHO05D004785 8.3e-46 188.0 213 51.6
Medtr6g005540 Medicago truncatula HOM05D004073 ORTHO05D004785 1.1e-45 187.6 235 52.8
CARHR268920 Cardamine hirsuta HOM05D004073 ORTHO05D004785 1.4e-45 187.2 209 53.1
Lj2g0012663 Lotus japonicus HOM05D004073 ORTHO05D004785 3.1e-45 186.0 218 50.9
Lj6g0025058 Lotus japonicus HOM05D004073 ORTHO05D004785 9.1e-45 184.5 218 50.9
Gorai.010G179600 Gossypium raimondii HOM05D004073 ORTHO05D004785 2.7e-44 183.0 157 63.1
EL10Ac4g07603 Beta vulgaris HOM05D004073 ORTHO05D004785 3.5e-44 182.6 220 51.4
BcaC04g20215 Brassica carinata HOM05D004073 ORTHO05D004785 3.5e-44 182.6 209 51.7
C09p46590 Brassica napus HOM05D004073 ORTHO05D004785 3.5e-44 182.6 209 51.7
BolC9t57510H Brassica oleracea HOM05D004073 ORTHO05D004785 3.5e-44 182.6 209 51.7
Thhalv10014039m.g Eutrema salsugineum HOM05D004073 ORTHO05D004785 4.5e-44 182.2 219 53.4
Ah.06g181300 Amaranthus hybridus HOM05D004073 ORTHO05D004785 1.0e-43 181.0 218 51.4
Aa31LG3G11560 Aethionema arabicum HOM05D004073 ORTHO05D004785 1.7e-43 180.3 198 55.6
Sp6g17530 Schrenkiella parvula HOM05D004073 ORTHO05D004785 2.2e-43 179.9 207 55.6
TAR626G1493 Trochodendron aralioides HOM05D004073 ORTHO05D004785 2.2e-43 179.9 147 67.3
Carub.0008s1598 Capsella rubella HOM05D004073 ORTHO05D004785 3.8e-43 179.1 213 53.5
ATR1126G058 Amborella trichopoda HOM05D004073 ORTHO05D004785 1.1e-42 177.6 221 51.1
SGA_v2.0_scaffold119G32745 Striga asiatica HOM05D004073 ORTHO05D004785 4.2e-42 175.6 239 48.1
Medtr4g055190 Medicago truncatula HOM05D004073 ORTHO05D004785 1.6e-41 173.7 218 46.3
Psat7g190200 Pisum sativum HOM05D004073 ORTHO05D004785 6.1e-41 171.8 224 46.9
COL.COLO4_09810 Corchorus olitorius HOM05D004073 ORTHO05D004785 1.4e-40 170.6 152 58.6
arahy.Tifrunner.gnm1.ann1.F1PCFU Arachis hypogaea HOM05D004073 ORTHO05D004785 4.0e-40 169.1 223 46.2
SalBow3G0415 Salvia bowleyana HOM05D004073 ORTHO05D004785 4.0e-40 169.1 186 51.1
Actinidia37162 Actinidia chinensis HOM05D004073 ORTHO05D004785 5.2e-40 168.7 172 55.8
arahy.Tifrunner.gnm1.ann1.HAYR03 Arachis hypogaea HOM05D004073 ORTHO05D004785 8.8e-40 167.9 218 46.3
Ca_19377_v3 Cicer arietinum L. HOM05D004073 ORTHO05D004785 1.2e-39 167.5 203 47.3
DCAR_013227 Daucus carota HOM05D002706 ORTHO05D003253 2.0e-39 166.8 220 47.3
Aqoxy5G03484 Aquilegia oxysepala HOM05D004073 ORTHO05D004785 9.8e-39 164.5 209 48.3
BcaB08g35921 Brassica carinata HOM05D004073 ORTHO05D004785 1.7e-38 163.7 208 48.1
Os12g0498800 Oryza sativa ssp. japonica HOM05D004073 ORTHO05D004785 1.7e-38 163.7 208 51.0
A10p12860 Brassica napus HOM05D004073 ORTHO05D004785 3.7e-38 162.5 210 48.1
BraA10t43379Z Brassica rapa HOM05D004073 ORTHO05D004785 3.7e-38 162.5 210 48.1
BolC2t07705H Brassica oleracea HOM05D004073 ORTHO05D004785 1.4e-37 160.6 211 52.6
AL8G31180 Arabidopsis lyrata HOM05D004073 ORTHO05D004785 1.8e-37 160.2 213 50.2
A02p09590 Brassica napus HOM05D004073 ORTHO05D004785 7.0e-37 158.3 211 52.6
Phvul.006G074800 Phaseolus vulgaris HOM05D004073 ORTHO05D004785 7.0e-37 158.3 212 44.3
Cpa.g.sc12.171 Carica papaya HOM05D004073 ORTHO05D004785 2.7e-36 156.4 170 57.6
BraA02t06023Z Brassica rapa HOM05D004073 ORTHO05D004785 5.9e-36 155.2 211 51.7
Zm00001eb409570 Zea mays HOM05D004073 ORTHO05D004785 1.7e-35 153.7 242 42.1
C02p15980 Brassica napus HOM05D004073 ORTHO05D004785 3.8e-35 152.5 213 51.2
ECA240G0169 Erigeron canadensis HOM05D004073 ORTHO05D004785 6.6e-35 151.8 168 54.2
CsaV3_7G018320 Cucumis sativus L. HOM05D004073 ORTHO05D004785 5.5e-34 148.7 105 73.3
CANSAT01G1348 Cannabis sativa HOM05D004073 ORTHO05D004785 2.8e-33 146.4 208 45.2
VMungo0540G1827 Vigna mungo HOM05D004073 ORTHO05D004785 3.6e-33 146.0 128 58.6
ECA246G0082 Erigeron canadensis HOM05D004073 ORTHO05D004785 1.4e-32 144.1 205 47.3
SEGI_22606 Sequoiadendron giganteum HOM05D004073 ORTHO05D004785 7.5e-31 138.3 200 47.5
TPR.G31066 Trifolium pratense HOM05D004073 ORTHO05D004785 1.4e-29 134.0 141 49.6
Gohir.A04G002800 Gossypium hirsutum HOM05D004073 ORTHO05D004785 2.7e-28 129.8 130 53.8
MD00G1008300 Malus domestica HOM05D004073 ORTHO05D004785 5.9e-28 128.6 146 55.5
Pp3c17_1290 Physcomitrium patens HOM05D004073 ORTHO05D004785 3.1e-24 116.3 216 40.7
BcaB05g22217 Brassica carinata HOM05D004073 ORTHO05D004785 4.0e-24 115.9 164 46.3
Mapoly0030s0146 Marchantia polymorpha HOM05D004073 ORTHO05D004785 5.2e-24 115.5 111 57.7
SMO172G0209 Selaginella moellendorffii HOM05D004073 ORTHO05D004785 2.6e-23 113.2 216 40.3
Pp3c12_2880 Physcomitrium patens HOM05D004073 ORTHO05D004785 1.3e-22 110.9 218 40.4
AagrBONN_evm.TU.Sc2ySwM_117.3546 Anthoceros agrestis HOM05D004073 ORTHO05D004785 1.3e-19 100.9 201 39.3
Actinidia35391 Actinidia chinensis HOM05D004073 ORTHO05D004785 2.4e-13 80.1 69 63.8
Lsat_1_v5_gn_1_76240 Lactuca sativa HOM05D004073 ORTHO05D004785 1.3e-11 74.3 60 65.0
arahy.Tifrunner.gnm1.ann1.0WG7ZM Arachis hypogaea HOM05D004073 ORTHO05D004785 2.8e-09 66.6 39 82.1
arahy.Tifrunner.gnm1.ann1.W5ZFFA Arachis hypogaea HOM05D004073 ORTHO05D004785 1.4e-08 64.3 44 70.5
MBI19_g20151_MAGBIO Magnolia biondii HOM05D004073 ORTHO05D004785 2.3e-08 63.5 207 30.0
Atru.chr2.3668 Acer truncatum HOM05D004073 ORTHO05D004785 4.0e-08 62.8 48 68.8
CBR_g33924 Chara braunii HOM05D004073 ORTHO05D004785 6.4e-06 55.5 120 34.2


User provided reference genes

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