Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g03197 Nelumbo nucifera HOM05D001797 ORTHO05D001650 6.5e-76 287.7 195 100.0
MSTRG.16049 Avicennia marina HOM05D001797 ORTHO05D001650 1.5e-19 100.5 218 45.0
CSS0000720 Camellia sinensis var. sinensis HOM05D001797 ORTHO05D001650 4.3e-19 99.0 226 53.1
Nn1g07498 Nelumbo nucifera HOM05D001797 ORTHO05D001650 1.3e-18 97.4 244 42.2
CSS0039099 Camellia sinensis var. sinensis HOM05D001797 ORTHO05D001650 8.1e-18 94.7 219 45.7
Eucgr.E03863 Eucalyptus grandis HOM05D001797 ORTHO05D001650 4.0e-17 92.4 218 32.6
Oeu000141.1 Olea europaea HOM05D001797 ORTHO05D001650 4.0e-17 92.4 233 53.2
Lsat_1_v5_gn_7_13200 Lactuca sativa HOM05D001797 ORTHO05D001650 5.3e-17 92.0 257 40.9
Oeu000140.3 Olea europaea HOM05D001797 ORTHO05D001650 1.5e-16 90.5 204 32.4
CSS0024411 Camellia sinensis var. sinensis HOM05D001797 ORTHO05D001650 3.4e-16 89.4 213 41.3
Sabra16G0011500 Salix brachista HOM05D001797 ORTHO05D001650 7.6e-16 88.2 193 48.2
CSS0035696 Camellia sinensis var. sinensis HOM05D001797 ORTHO05D001650 1.7e-15 87.0 216 46.3
CSS0032208 Camellia sinensis var. sinensis HOM05D001797 ORTHO05D001650 2.2e-15 86.7 230 51.3
AUR62021820 Chenopodium quinoa HOM05D001797 ORTHO05D001650 1.1e-14 84.3 243 46.1
TAR375G1050 Trochodendron aralioides HOM05D001797 ORTHO05D001650 1.1e-14 84.3 188 48.9
vmacro03617 Vaccinium macrocarpon HOM05D001797 ORTHO05D001650 1.1e-14 84.3 217 47.9
CSS0036445 Camellia sinensis var. sinensis HOM05D001797 ORTHO05D001650 1.4e-14 84.0 239 47.7
CSS0044052 Camellia sinensis var. sinensis HOM05D001797 ORTHO05D001650 4.2e-14 82.4 231 42.9
Rhsim13G0141800 Rhododendron simsii HOM05D001797 ORTHO05D001650 7.1e-14 81.6 216 51.4
RhsimUnG0175900 Rhododendron simsii HOM05D001797 ORTHO05D001650 9.3e-14 81.3 221 33.5
CSS0006117 Camellia sinensis var. sinensis HOM05D001797 ORTHO05D001650 1.6e-13 80.5 226 47.3
Cc09_g08340 Coffea canephora HOM05D001797 ORTHO05D001650 1.6e-13 80.5 230 45.2
TAR624G1419 Trochodendron aralioides HOM05D001797 ORTHO05D001650 1.6e-13 80.5 184 48.9
Haze_07009 Corylus avellana HOM05D001797 ORTHO05D001650 2.1e-13 80.1 213 47.4
Dinv15353 Davidia involucrata HOM05D001797 ORTHO05D001650 2.1e-13 80.1 242 40.9
Potri.006G019200 Populus trichocarpa HOM05D001797 ORTHO05D001650 2.7e-13 79.7 222 44.1
Oeu002776.1 Olea europaea HOM05D001797 ORTHO05D001650 4.6e-13 79.0 238 39.9
TAR624G0994 Trochodendron aralioides HOM05D001797 ORTHO05D001650 7.9e-13 78.2 213 38.5
Manes.09G077766 Manihot esculenta HOM05D001797 ORTHO05D001650 1.0e-12 77.8 231 39.4
PGR042G3950 Punica granatum HOM05D001797 ORTHO05D001650 1.0e-12 77.8 269 40.5
Actinidia35737 Actinidia chinensis HOM05D001797 ORTHO05D001650 1.9e-11 73.6 219 49.3
Dinv04401 Davidia involucrata HOM05D001797 ORTHO05D001650 2.5e-11 73.2 214 33.2
Migut.M01438 Erythranthe guttata HOM05D001797 ORTHO05D001650 2.5e-11 73.2 249 41.4
AT4G16380 Arabidopsis thaliana HOM05D001797 ORTHO05D001650 3.3e-11 72.8 253 41.5
CARHR222750 Cardamine hirsuta HOM05D001797 ORTHO05D001650 3.3e-11 72.8 263 38.8
Haze_07008 Corylus avellana HOM05D001797 ORTHO05D001650 3.3e-11 72.8 72 51.4
Manes.09G077799 Manihot esculenta HOM05D001797 ORTHO05D001650 3.3e-11 72.8 250 46.4
Nitab4.5_0002478g0050 Nicotiana tabacum HOM05D001797 ORTHO05D001650 3.3e-11 72.8 73 54.8
RcHm_v2.0_Chr1g0347351 Rosa chinensis HOM05D001797 ORTHO05D001650 3.3e-11 72.8 224 33.0
MSTRG.7125 Avicennia marina HOM05D001797 ORTHO05D001650 4.3e-11 72.4 224 41.1
C01p26560 Brassica napus HOM05D001797 ORTHO05D001650 4.3e-11 72.4 220 31.8
CAN.G449.28 Capsicum annuum HOM05D001797 ORTHO05D001650 7.4e-11 71.6 248 49.2
Potri.016G006700 Populus trichocarpa HOM05D001797 ORTHO05D001650 7.4e-11 71.6 222 45.0
AL7G38650 Arabidopsis lyrata HOM05D001797 ORTHO05D001650 9.6e-11 71.2 251 38.6
FAN14G5464 Fragaria x ananassa HOM05D001797 ORTHO05D001650 9.6e-11 71.2 218 46.3
FvH4_3g00445 Fragaria vesca HOM05D001797 ORTHO05D001650 1.6e-10 70.5 216 44.4
FAN02G3978 Fragaria x ananassa HOM05D001797 ORTHO05D001650 1.6e-10 70.5 215 46.0
FAN03G0520 Fragaria x ananassa HOM05D001797 ORTHO05D001650 1.6e-10 70.5 215 46.0
FAN05G0358 Fragaria x ananassa HOM05D001797 ORTHO05D001650 1.6e-10 70.5 215 46.0
FAN05G0669 Fragaria x ananassa HOM05D001797 ORTHO05D001650 1.6e-10 70.5 215 46.0
FAN05G4551 Fragaria x ananassa HOM05D001797 ORTHO05D001650 1.6e-10 70.5 215 46.0
FAN06G3990 Fragaria x ananassa HOM05D001797 ORTHO05D001650 1.6e-10 70.5 215 46.0
FAN08G2964 Fragaria x ananassa HOM05D001797 ORTHO05D001650 1.6e-10 70.5 215 46.0
FAN15G3701 Fragaria x ananassa HOM05D001797 ORTHO05D001650 1.6e-10 70.5 215 46.0
FAN16G3637 Fragaria x ananassa HOM05D001797 ORTHO05D001650 1.6e-10 70.5 215 46.0
FAN24G0943 Fragaria x ananassa HOM05D001797 ORTHO05D001650 1.6e-10 70.5 215 46.0
FAN26G1410 Fragaria x ananassa HOM05D001797 ORTHO05D001650 1.6e-10 70.5 215 46.0
FAN27G0715 Fragaria x ananassa HOM05D001797 ORTHO05D001650 1.6e-10 70.5 215 46.0
FAN27G3366 Fragaria x ananassa HOM05D001797 ORTHO05D001650 1.6e-10 70.5 215 46.0
FAN28G0889 Fragaria x ananassa HOM05D001797 ORTHO05D001650 1.6e-10 70.5 215 46.0
Oeu052859.1 Olea europaea HOM05D001797 ORTHO05D001650 1.6e-10 70.5 187 34.2
GSVIVG01003495001 Vitis vinifera HOM05D001797 ORTHO05D001650 1.6e-10 70.5 222 30.6
MSTRG.16046 Avicennia marina HOM05D001797 ORTHO05D001650 2.1e-10 70.1 65 55.4
MD10G1337900 Malus domestica HOM05D001797 ORTHO05D001650 2.8e-10 69.7 224 45.1
GSVIVG01005128001 Vitis vinifera HOM05D001797 ORTHO05D001650 3.7e-10 69.3 247 38.9
Actinidia23513 Actinidia chinensis HOM05D001797 ORTHO05D001650 6.2e-10 68.6 219 33.8
Eucgr.E03873 Eucalyptus grandis HOM05D001797 ORTHO05D001650 6.2e-10 68.6 209 39.7
BolC1t02596H Brassica oleracea HOM05D001797 ORTHO05D001650 8.2e-10 68.2 267 41.6
RcHm_v2.0_Chr5g0000621 Rosa chinensis HOM05D001797 ORTHO05D001650 8.2e-10 68.2 240 45.8
Sed0007136 Sechium edule HOM05D001797 ORTHO05D001650 8.2e-10 68.2 242 47.5
BcaC09g50336 Brassica carinata HOM05D001797 ORTHO05D001650 1.1e-09 67.8 267 41.6
FAN08G1118 Fragaria x ananassa HOM05D001797 ORTHO05D001650 1.1e-09 67.8 221 44.8
FAN13G2605 Fragaria x ananassa HOM05D001797 ORTHO05D001650 1.1e-09 67.8 221 44.8
C01p26550 Brassica napus HOM05D001797 ORTHO05D001650 1.4e-09 67.4 220 34.1
Duzib192G0736 Durio zibethinus HOM05D001797 ORTHO05D001650 1.4e-09 67.4 222 45.5
DCAR_030844 Daucus carota HOM05D001797 ORTHO05D001650 1.8e-09 67.0 297 38.4
Thhalv10026065m.g Eutrema salsugineum HOM05D001797 ORTHO05D001650 1.8e-09 67.0 69 53.6
QL05p068090 Quercus lobata HOM05D001797 ORTHO05D001650 2.4e-09 66.6 245 40.8
Ah.14g087420 Amaranthus hybridus HOM05D001797 ORTHO05D001650 3.1e-09 66.2 273 43.6
C01p26520 Brassica napus HOM05D001797 ORTHO05D001650 4.0e-09 65.9 271 40.6
RhsimUnG0175400 Rhododendron simsii HOM05D001797 ORTHO05D001650 4.0e-09 65.9 219 40.2
TWI38G0564 Tripterygium wilfordii HOM05D001797 ORTHO05D001650 5.3e-09 65.5 233 44.2
Actinidia01445 Actinidia chinensis HOM05D001797 ORTHO05D001650 9.0e-09 64.7 83 47.0
EL10Ac8g20254 Beta vulgaris HOM05D001797 ORTHO05D001650 1.5e-08 63.9 285 38.9
Ciclev10017543m.g Citrus clementina HOM05D001797 ORTHO05D001650 1.5e-08 63.9 240 45.4
Glyma.17G006300 Glycine max HOM05D001797 ORTHO05D001650 1.5e-08 63.9 270 40.0
Solyc05g054210.3 Solanum lycopersicum HOM05D001797 ORTHO05D001650 1.5e-08 63.9 75 56.0
A01p21220 Brassica napus HOM05D001797 ORTHO05D001650 2.0e-08 63.5 269 40.9
CAN.G1156.11 Capsicum annuum HOM05D001797 ORTHO05D001650 2.0e-08 63.5 68 48.5
FvH4_3g00430 Fragaria vesca HOM05D001797 ORTHO05D001650 2.0e-08 63.5 228 33.8
SGA_v2.0_scaffold49G18226 Striga asiatica HOM05D001797 ORTHO05D001650 2.0e-08 63.5 77 44.2
BcaNung00203 Brassica carinata HOM05D001797 ORTHO05D001650 2.6e-08 63.2 263 41.4
BolC8t48363H Brassica oleracea HOM05D001797 ORTHO05D001650 2.6e-08 63.2 261 37.2
Cc00_g26060 Coffea canephora HOM05D001797 ORTHO05D001650 2.6e-08 63.2 92 42.4
MD05G1360500 Malus domestica HOM05D001797 ORTHO05D001650 2.6e-08 63.2 89 41.6
PGR042G2878 Punica granatum HOM05D001797 ORTHO05D001650 2.6e-08 63.2 274 39.1
VMungo1215G2802 Vigna mungo HOM05D001797 ORTHO05D001650 2.6e-08 63.2 260 41.9
Aa31LG2G12440 Aethionema arabicum HOM05D001797 ORTHO05D001650 3.4e-08 62.8 262 43.5
Lj4g0001433 Lotus japonicus HOM05D001797 ORTHO05D001650 3.4e-08 62.8 249 43.0
PGSC0003DMG400008441 Solanum tuberosum HOM05D001797 ORTHO05D001650 3.4e-08 62.8 77 54.5
SGA_v2.0_scaffold630G53285 Striga asiatica HOM05D001797 ORTHO05D001650 3.4e-08 62.8 86 44.2
TWI38G1105 Tripterygium wilfordii HOM05D001797 ORTHO05D001650 3.4e-08 62.8 220 35.0
Sopen05g032700 Solanum pennellii HOM05D001797 ORTHO05D001650 4.5e-08 62.4 79 53.2
vmacro03619 Vaccinium macrocarpon HOM05D001797 ORTHO05D001650 4.5e-08 62.4 177 44.1
arahy.Tifrunner.gnm1.ann1.L21B75 Arachis hypogaea HOM05D001797 ORTHO05D001650 5.8e-08 62.0 256 43.4
CANSAT56G0532 Cannabis sativa HOM05D001797 ORTHO05D001650 5.8e-08 62.0 257 36.2
Gohir.D06G162900 Gossypium hirsutum HOM05D001797 ORTHO05D001650 7.6e-08 61.6 261 40.2
Psat4g002360 Pisum sativum HOM05D001797 ORTHO05D001650 7.6e-08 61.6 244 47.1
QL05p068118 Quercus lobata HOM05D001797 ORTHO05D001650 7.6e-08 61.6 240 40.8
Cc09_g00440 Coffea canephora HOM05D001797 ORTHO05D001650 1.0e-07 61.2 83 43.4
Dinv15346 Davidia involucrata HOM05D001797 ORTHO05D001650 1.3e-07 60.8 258 42.2
C07p47830 Brassica napus HOM05D001797 ORTHO05D001650 1.7e-07 60.5 253 42.3
Haze_06996 Corylus avellana HOM05D001797 ORTHO05D001650 1.7e-07 60.5 196 35.2
Dinv15352 Davidia involucrata HOM05D001797 ORTHO05D001650 1.7e-07 60.5 238 34.0
Nitab4.5_0001668g0090 Nicotiana tabacum HOM05D001797 ORTHO05D001650 1.7e-07 60.5 273 40.7
Oeu062947.1 Olea europaea HOM05D001797 ORTHO05D001650 1.7e-07 60.5 175 28.0
THA.LOC104815475 Tarenaya hassleriana HOM05D001797 ORTHO05D001650 1.7e-07 60.5 274 37.2
Cc03_g07690 Coffea canephora HOM05D001797 ORTHO05D001650 2.2e-07 60.1 82 43.9
Duzib192G0521 Durio zibethinus HOM05D001797 ORTHO05D001650 2.2e-07 60.1 223 45.7
Duzib235G0111 Durio zibethinus HOM05D001797 ORTHO05D001650 2.2e-07 60.1 257 40.1
MD08G1234400 Malus domestica HOM05D001797 ORTHO05D001650 2.2e-07 60.1 81 40.7
RcHm_v2.0_Chr1g0347291 Rosa chinensis HOM05D001797 ORTHO05D001650 2.2e-07 60.1 223 35.4
SGA_v2.0_scaffold89G27532 Striga asiatica HOM05D001797 ORTHO05D001650 2.2e-07 60.1 91 40.7
Atru.chr1.2286 Acer truncatum HOM05D001797 ORTHO05D001650 2.9e-07 59.7 259 42.5
BraA08t33234Z Brassica rapa HOM05D001797 ORTHO05D001650 2.9e-07 59.7 265 35.8
Cfa000045 Carpinus fangiana HOM05D001797 ORTHO05D001650 2.9e-07 59.7 245 46.1
Ciclev10016401m.g Citrus clementina HOM05D001797 ORTHO05D001650 2.9e-07 59.7 252 47.2
COL.COLO4_31928 Corchorus olitorius HOM05D001797 ORTHO05D001650 2.9e-07 59.7 72 47.2
Actinidia23515 Actinidia chinensis HOM05D001797 ORTHO05D001650 3.8e-07 59.3 219 34.7
A01p21240 Brassica napus HOM05D001797 ORTHO05D001650 3.8e-07 59.3 209 35.9
FvH4_3g00443 Fragaria vesca HOM05D001797 ORTHO05D001650 3.8e-07 59.3 242 47.1
HanXRQChr05g0129061 Helianthus annuus HOM05D001797 ORTHO05D001650 3.8e-07 59.3 282 39.7
Nitab4.5_0000147g0290 Nicotiana tabacum HOM05D001797 ORTHO05D001650 3.8e-07 59.3 76 42.1
TAR624G0157 Trochodendron aralioides HOM05D001797 ORTHO05D001650 3.8e-07 59.3 75 45.3
Zm00001eb327160 Zea mays HOM05D001797 ORTHO05D001650 3.8e-07 59.3 89 39.3
BolC1t02597H Brassica oleracea HOM05D001797 ORTHO05D001650 4.9e-07 58.9 241 41.1
Carub.0007s2515 Capsella rubella HOM05D001797 ORTHO05D001650 4.9e-07 58.9 75 48.0
Oeu052841.1 Olea europaea HOM05D001797 ORTHO05D001650 4.9e-07 58.9 187 33.7
TWI38G0363 Tripterygium wilfordii HOM05D001797 ORTHO05D001650 4.9e-07 58.9 172 41.3
MSTRG.7137 Avicennia marina HOM05D001797 ORTHO05D001650 6.5e-07 58.5 176 27.8
Potri.006G019300 Populus trichocarpa HOM05D001797 ORTHO05D001650 6.5e-07 58.5 72 52.8
Prupe.4G004900 Prunus persica HOM05D001797 ORTHO05D001650 6.5e-07 58.5 247 44.9
Prupe.4G005100 Prunus persica HOM05D001797 ORTHO05D001650 6.5e-07 58.5 222 34.7
Sopen04g007040 Solanum pennellii HOM05D001797 ORTHO05D001650 6.5e-07 58.5 79 40.5
Eucgr.E03867 Eucalyptus grandis HOM05D001797 ORTHO05D001650 8.4e-07 58.2 274 36.1
RcHm_v2.0_Chr1g0328811 Rosa chinensis HOM05D001797 ORTHO05D001650 8.4e-07 58.2 87 39.1
A08p12240 Brassica napus HOM05D001797 ORTHO05D001650 1.1e-06 57.8 265 35.5
ClCG01G011010 Citrullus lanatus HOM05D001797 ORTHO05D001650 1.1e-06 57.8 91 39.6
FAN25G0318 Fragaria x ananassa HOM05D001797 ORTHO05D001650 1.1e-06 57.8 81 40.7
Sabra16G0011400 Salix brachista HOM05D001797 ORTHO05D001650 1.1e-06 57.8 223 43.5
SGA_v2.0_scaffold7G03707 Striga asiatica HOM05D001797 ORTHO05D001650 1.1e-06 57.8 83 42.2
Phvul.003G086300 Phaseolus vulgaris HOM05D001797 ORTHO05D001650 1.4e-06 57.4 66 57.6
Solyc04g015020.3 Solanum lycopersicum HOM05D001797 ORTHO05D001650 1.4e-06 57.4 74 41.9
Nitab4.5_0007833g0010 Nicotiana tabacum HOM05D001797 ORTHO05D001650 1.9e-06 57.0 74 41.9
PGSC0003DMG400015010 Solanum tuberosum HOM05D001797 ORTHO05D001650 1.9e-06 57.0 74 41.9
Eucgr.E03862 Eucalyptus grandis HOM05D001797 ORTHO05D001650 2.5e-06 56.6 194 35.6
Gorai.010G190100 Gossypium raimondii HOM05D001797 ORTHO05D001650 2.5e-06 56.6 84 39.3
TAR624G0736 Trochodendron aralioides HOM05D001797 ORTHO05D001650 2.5e-06 56.6 83 43.4
BcaC09g50331 Brassica carinata HOM05D001797 ORTHO05D001650 3.2e-06 56.2 69 44.9
BcaC09g50333 Brassica carinata HOM05D001797 ORTHO05D001650 3.2e-06 56.2 69 44.9
FAN21G3005 Fragaria x ananassa HOM05D001797 ORTHO05D001650 3.2e-06 56.2 251 44.6
PSO541G2121 Papaver somniferum HOM05D001797 ORTHO05D001650 4.2e-06 55.8 85 42.4
Gohir.A05G175900 Gossypium hirsutum HOM05D001797 ORTHO05D001650 5.5e-06 55.5 171 42.7
Gohir.A06G156500 Gossypium hirsutum HOM05D001797 ORTHO05D001650 5.5e-06 55.5 90 38.9
Gorai.010G190200 Gossypium raimondii HOM05D001797 ORTHO05D001650 5.5e-06 55.5 83 41.0
MD10G1337500 Malus domestica HOM05D001797 ORTHO05D001650 5.5e-06 55.5 226 42.9
PSO675G8410 Papaver somniferum HOM05D001797 ORTHO05D001650 5.5e-06 55.5 86 43.0
Aqoxy4G01882 Aquilegia oxysepala HOM05D001797 ORTHO05D001650 7.1e-06 55.1 261 40.2
ECA247G2176 Erigeron canadensis HOM05D001797 ORTHO05D001650 7.1e-06 55.1 257 40.5
Gorai.009G184500 Gossypium raimondii HOM05D001797 ORTHO05D001650 7.1e-06 55.1 216 25.5
Thecc.06G239000 Theobroma cacao HOM05D001797 ORTHO05D001650 7.1e-06 55.1 78 44.9
TAR624G0438 Trochodendron aralioides HOM05D001797 ORTHO05D001650 7.1e-06 55.1 80 42.5
Gohir.A10G008000 Gossypium hirsutum HOM05D001797 ORTHO05D001650 9.3e-06 54.7 75 41.3
Gohir.D05G178900 Gossypium hirsutum HOM05D001797 ORTHO05D001650 9.3e-06 54.7 173 28.9
Solyc11g012680.3 Solanum lycopersicum HOM05D001797 ORTHO05D001650 9.3e-06 54.7 90 38.9


User provided reference genes

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