Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g03086 Nelumbo nucifera HOM05D006061 ORTHO05D007450 0.0e+00 1232.2 622 100.0
TAR365G1230 Trochodendron aralioides HOM05D006061 ORTHO05D007450 2.9e-234 815.5 627 67.3
MBI07_g08916_MAGBIO Magnolia biondii HOM05D006061 ORTHO05D007450 5.1e-207 724.9 628 60.0
Actinidia30104 Actinidia chinensis HOM05D006061 ORTHO05D007450 9.7e-190 667.5 620 58.5
Duzib138G1183 Durio zibethinus HOM05D006061 ORTHO05D007450 9.4e-185 651.0 623 56.0
Aqoxy5G00054 Aquilegia oxysepala HOM05D006061 ORTHO05D007450 8.8e-183 644.4 624 55.1
Thecc.01G244800 Theobroma cacao HOM05D006061 ORTHO05D007450 7.0e-180 634.8 623 54.3
PSO170G3920 Papaver somniferum HOM05D006061 ORTHO05D007450 3.5e-179 632.5 630 54.8
Cfa002517 Carpinus fangiana HOM05D006061 ORTHO05D007450 4.5e-179 632.1 626 55.6
Prupe.8G209500 Prunus persica HOM05D006061 ORTHO05D007450 3.8e-178 629.0 622 55.6
Sc05g0002480 Simmondsia chinensis HOM05D006061 ORTHO05D007450 1.0e-175 620.9 623 51.8
Gorai.007G151600 Gossypium raimondii HOM05D006061 ORTHO05D007450 1.4e-175 620.5 623 53.6
Atru.chr5.1926 Acer truncatum HOM05D006061 ORTHO05D007450 2.0e-174 616.7 626 54.2
Gohir.A11G135100 Gossypium hirsutum HOM05D006061 ORTHO05D007450 4.4e-174 615.5 626 53.5
GSVIVG01028489001 Vitis vinifera HOM05D006061 ORTHO05D007450 5.9e-171 605.1 579 56.1
Gohir.D11G141300 Gossypium hirsutum HOM05D006061 ORTHO05D007450 1.7e-170 603.6 626 52.9
Potri.014G194800 Populus trichocarpa HOM05D006061 ORTHO05D007450 5.5e-169 598.6 626 52.7
RcHm_v2.0_Chr6g0285561 Rosa chinensis HOM05D006061 ORTHO05D007450 3.4e-166 589.3 625 52.0
Eucgr.H00824 Eucalyptus grandis HOM05D006061 ORTHO05D007450 2.8e-165 586.3 624 51.4
MD10G1171000 Malus domestica HOM05D006061 ORTHO05D007450 4.8e-165 585.5 622 52.1
TWI59G0704 Tripterygium wilfordii HOM05D006061 ORTHO05D007450 1.8e-164 583.6 625 51.8
Ciclev10019392m.g Citrus clementina HOM05D006061 ORTHO05D007450 1.2e-163 580.9 623 52.2
CiPaw.04G108700 Carya illinoinensis HOM05D006061 ORTHO05D007450 2.0e-163 580.1 538 58.4
Rhsim13G0041800 Rhododendron simsii HOM05D006061 ORTHO05D000758 5.9e-163 578.6 716 47.5
Lj1g0026990 Lotus japonicus HOM05D006061 ORTHO05D007450 1.3e-162 577.4 626 51.9
SGA_v2.0_scaffold3G01591 Striga asiatica HOM05D006061 ORTHO05D007450 4.2e-161 572.4 640 49.8
ClCG09G009420 Citrullus lanatus HOM05D006061 ORTHO05D007450 7.2e-161 571.6 626 51.1
PGR083G1193 Punica granatum HOM05D006061 ORTHO05D007450 3.0e-159 566.2 622 50.6
AUR62008856 Chenopodium quinoa HOM05D006061 ORTHO05D007450 4.0e-159 565.8 625 49.0
CsaV3_7G025440 Cucumis sativus L. HOM05D006061 ORTHO05D007450 3.4e-158 562.8 624 50.2
SalBow6G4925 Salvia bowleyana HOM05D006061 ORTHO05D007450 5.7e-158 562.0 629 49.9
Lj1A80G16 Lonicera japonica HOM05D006061 ORTHO05D007450 3.7e-157 559.3 660 49.2
FvH4_2g19870 Fragaria vesca HOM05D006061 ORTHO05D007450 4.1e-156 555.8 626 49.7
Phvul.001G168300 Phaseolus vulgaris HOM05D006061 ORTHO05D007450 9.2e-156 554.7 630 50.3
CANSAT01G1389 Cannabis sativa HOM05D006061 ORTHO05D007450 3.5e-155 552.7 628 50.5
Migut.N02246 Erythranthe guttata HOM05D006061 ORTHO05D007450 4.5e-155 552.4 629 49.9
EL10Ac7g17761 Beta vulgaris HOM05D006061 ORTHO05D007450 1.3e-154 550.8 643 48.4
Glyma.19G171100 Glycine max HOM05D006061 ORTHO05D007450 3.8e-154 549.3 628 50.5
MSTRG.12506 Avicennia marina HOM05D006061 ORTHO05D007450 5.0e-154 548.9 631 48.7
THA.LOC104814544 Tarenaya hassleriana HOM05D006061 ORTHO05D007450 1.9e-153 547.0 628 49.4
PGSC0003DMG401020085 Solanum tuberosum HOM05D006061 ORTHO05D007450 2.5e-153 546.6 626 48.9
arahy.Tifrunner.gnm1.ann1.4WTK5H Arachis hypogaea HOM05D006061 ORTHO05D007450 3.6e-152 542.7 632 49.4
COL.COLO4_08163 Corchorus olitorius HOM05D006061 ORTHO05D007450 8.0e-152 541.6 674 47.0
Sopen06g035030 Solanum pennellii HOM05D006061 ORTHO05D007450 8.0e-152 541.6 626 48.7
arahy.Tifrunner.gnm1.ann1.J8EIPB Arachis hypogaea HOM05D006061 ORTHO05D007450 1.8e-151 540.4 632 49.1
Glyma.03G169900 Glycine max HOM05D006061 ORTHO05D007450 1.8e-151 540.4 628 49.4
ATR0787G120 Amborella trichopoda HOM05D006061 ORTHO05D007450 2.3e-151 540.0 652 48.2
Ca_08767_v3 Cicer arietinum L. HOM05D006061 ORTHO05D007450 3.0e-151 539.7 628 47.8
Solyc06g083640.4 Solanum lycopersicum HOM05D006061 ORTHO05D007450 8.9e-151 538.1 626 48.6
Nitab4.5_0002085g0150 Nicotiana tabacum HOM05D006061 ORTHO05D007450 3.4e-150 536.2 629 48.2
Nitab4.5_0006211g0030 Nicotiana tabacum HOM05D006061 ORTHO05D007450 5.7e-150 535.4 629 48.8
Peaxi162Scf00517g00313 Petunia axillaris HOM05D006061 ORTHO05D007450 7.5e-150 535.0 643 47.6
Sabra14G0142900 Salix brachista HOM05D006061 ORTHO05D007450 3.7e-149 532.7 579 52.3
Hund05498 Selenicereus undatus HOM05D006061 ORTHO05D007450 3.7e-149 532.7 634 46.5
Haze_24749 Corylus avellana HOM05D006061 ORTHO05D007450 5.4e-148 528.9 706 46.6
TPR.G7560 Trifolium pratense HOM05D006061 ORTHO05D007450 9.5e-145 518.1 633 48.2
AL3G47870 Arabidopsis lyrata HOM05D006061 ORTHO05D007450 1.5e-142 510.8 627 46.6
BcaC06g36697 Brassica carinata HOM05D006061 ORTHO05D007450 2.0e-142 510.4 622 46.8
BolC7t40535H Brassica oleracea HOM05D006061 ORTHO05D007450 2.0e-142 510.4 622 46.8
C07p00980 Brassica napus HOM05D006061 ORTHO05D007450 3.4e-142 509.6 622 46.8
Manes.12G040800 Manihot esculenta HOM05D006061 ORTHO05D007450 5.8e-142 508.8 482 58.7
CAN.G771.51 Capsicum annuum HOM05D006061 ORTHO05D007450 9.8e-142 508.1 640 45.6
Aa31LG8G17130 Aethionema arabicum HOM05D006061 ORTHO05D007450 2.2e-141 506.9 625 46.9
BcaB03g16813 Brassica carinata HOM05D006061 ORTHO05D007450 2.2e-141 506.9 627 46.4
Psat3g050240 Pisum sativum HOM05D006061 ORTHO05D007450 1.6e-139 500.7 631 46.3
A07p00530 Brassica napus HOM05D006061 ORTHO05D007450 2.0e-139 500.4 626 46.6
Ah.15g093400 Amaranthus hybridus HOM05D006061 ORTHO05D007450 1.0e-138 498.0 632 46.2
BraA07t27847Z Brassica rapa HOM05D006061 ORTHO05D007450 1.0e-138 498.0 626 46.8
Thhalv10001935m.g Eutrema salsugineum HOM05D006061 ORTHO05D007450 3.9e-138 496.1 629 46.4
AT2G20210 Arabidopsis thaliana HOM05D006061 ORTHO05D007450 6.6e-138 495.4 629 46.6
HanXRQChr13g0409031 Helianthus annuus HOM05D006061 ORTHO05D007450 1.1e-137 494.6 626 43.9
Medtr7g099450 Medicago truncatula HOM05D006061 ORTHO05D007450 2.8e-136 490.0 645 45.6
Lsat_1_v5_gn_8_90281 Lactuca sativa HOM05D006061 ORTHO05D007450 7.8e-131 471.9 624 43.9
FAN27G0211 Fragaria x ananassa HOM05D006061 ORTHO05D007450 3.1e-127 459.9 634 44.5
ECA236G2978 Erigeron canadensis HOM05D006061 ORTHO05D000758 1.4e-119 434.5 628 40.9
vmacro02729 Vaccinium macrocarpon HOM05D006061 ORTHO05D007450 5.2e-119 432.6 395 59.2
Sp3g33450 Schrenkiella parvula HOM05D006061 ORTHO05D007450 2.4e-116 423.7 484 50.8
Cc01_g08490 Coffea canephora HOM05D006061 ORTHO05D007450 1.2e-115 421.4 490 46.7
Carub.0003s3454 Capsella rubella HOM05D006061 ORTHO05D007450 1.9e-108 397.5 484 48.8
CSS0041718 Camellia sinensis var. sinensis HOM05D006061 ORTHO05D007450 2.0e-102 377.5 366 57.7
FAN15G2648 Fragaria x ananassa HOM05D006061 ORTHO05D007450 2.4e-100 370.5 416 50.0
AUR62025388 Chenopodium quinoa HOM05D006061 ORTHO05D007450 7.6e-94 349.0 408 47.5
Sed0025129 Sechium edule HOM05D006061 ORTHO05D007450 3.1e-87 327.0 317 56.8
Cpa.g.sc8.207 Carica papaya HOM05D006061 ORTHO05D007450 6.1e-83 312.8 278 59.4
Lalb_Chr01g0019421 Lupinus albus HOM05D006061 ORTHO05D007450 2.5e-81 307.4 382 44.8
Cpa.g.sc8.208 Carica papaya HOM05D006061 ORTHO05D007450 1.2e-78 298.5 311 50.8
VMungo1383G3365 Vigna mungo HOM05D006061 ORTHO05D007450 1.1e-76 292.0 319 52.0
MELO3C024149.2 Cucumis melo HOM05D006061 ORTHO05D007450 8.8e-74 282.3 278 55.8
CARHR110700 Cardamine hirsuta HOM05D006061 ORTHO05D007450 1.3e-61 241.9 278 50.7
Oeu039640.1 Olea europaea HOM05D006061 ORTHO05D007450 1.3e-61 241.9 225 56.9
Pp3c7_21970 Physcomitrium patens HOM05D006061 ORTHO05D007450 1.9e-60 238.0 682 30.2
SEGI_05721 Sequoiadendron giganteum HOM05D006061 ORTHO05D007450 4.2e-60 236.9 322 43.5
Lalb_Chr01g0019411 Lupinus albus HOM05D006061 ORTHO05D007450 1.7e-53 214.9 225 54.2
SMO356G0042 Selaginella moellendorffii HOM05D006061 ORTHO05D007450 3.2e-52 210.7 628 28.5
VMungo1383G3184 Vigna mungo HOM05D006061 ORTHO05D007450 9.4e-52 209.1 252 46.0
Zm00001eb133830 Zea mays HOM05D006061 ORTHO05D007450 3.4e-49 200.7 283 43.5
unitig_8.g4624 Utricularia gibba HOM05D006061 ORTHO05D007450 1.7e-48 198.4 320 40.3
vmacro02728 Vaccinium macrocarpon HOM05D006061 ORTHO05D007450 5.9e-46 189.9 290 39.0
DCAR_004700 Daucus carota HOM05D000065 ORTHO05D007450 1.9e-44 184.9 424 32.3
HPP92_014830 Vanilla planifolia HOM05D006061 ORTHO05D007450 6.1e-35 153.3 435 30.1
Oeu039641.2 Olea europaea HOM05D006061 ORTHO05D007450 1.2e-30 139.0 164 45.7
Zm00001eb428270 Zea mays HOM05D006061 ORTHO05D007450 1.0e-29 136.0 166 48.2
CBR_g31999 Chara braunii HOM05D006061 ORTHO05D007450 1.7e-29 135.2 576 24.8
Cc00_g31740 Coffea canephora HOM05D006061 ORTHO05D007450 3.9e-29 134.0 151 50.3
Zm00001eb008990 Zea mays HOM05D006061 ORTHO05D007450 1.1e-28 132.5 150 50.0
Os12g0228900 Oryza sativa ssp. japonica HOM05D006061 ORTHO05D007450 1.6e-27 128.6 254 36.6
PSO675G3076 Papaver somniferum HOM05D006061 ORTHO05D007450 6.8e-26 123.2 357 29.7
Zm00001eb120120 Zea mays HOM05D006061 ORTHO05D007450 2.0e-25 121.7 126 55.6
Phvul.004G074200 Phaseolus vulgaris HOM05D006061 ORTHO05D007450 4.9e-24 117.1 171 46.8
Rhsim13G0055400 Rhododendron simsii HOM05D006061 ORTHO05D007450 2.7e-22 111.3 125 52.0
SHI26842 Sapria himalayana HOM05D006061 ORTHO05D007450 1.3e-21 109.0 150 44.7
Gorai.008G101100 Gossypium raimondii HOM05D006061 ORTHO05D007450 4.3e-20 104.0 137 41.6
Gohir.D10G064900 Gossypium hirsutum HOM05D006061 ORTHO05D007450 8.1e-19 99.8 137 40.1
CARHR174390 Cardamine hirsuta HOM05D006061 ORTHO05D007450 5.2e-18 97.1 103 47.6
Zm00001eb399320 Zea mays HOM05D000103 ORTHO05D007450 1.5e-17 95.5 114 48.2
Psat1g093320 Pisum sativum HOM05D006061 ORTHO05D007450 2.6e-17 94.7 136 41.2
Psat0ss8385g0040 Pisum sativum HOM05D006061 ORTHO05D007450 9.2e-15 86.3 133 39.1
SHI26843 Sapria himalayana HOM05D006061 ORTHO05D007450 9.2e-15 86.3 195 33.8
Zm00001eb068850 Zea mays HOM05D006061 ORTHO05D007450 1.7e-13 82.0 97 50.5
CDE09G0654 Ceratophyllum demersum HOM05D006061 ORTHO05D007450 6.2e-11 73.6 80 45.0
SHI26848 Sapria himalayana HOM05D006061 ORTHO05D007450 1.6e-06 58.9 92 43.5


User provided reference genes

Program Settings