Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g03078 Nelumbo nucifera HOM05D003512 ORTHO05D004013 2.9e-36 155.2 113 100.0
Nn3g19853 Nelumbo nucifera HOM05D003512 ORTHO05D004013 1.9e-27 125.9 110 72.7
QL09p043416 Quercus lobata HOM05D003512 ORTHO05D004013 5.4e-22 107.8 137 51.1
Aqoxy5G00078 Aquilegia oxysepala HOM05D003512 ORTHO05D004013 3.9e-20 101.7 136 50.0
Cfa002510 Carpinus fangiana HOM05D003512 ORTHO05D004013 3.3e-19 98.6 118 65.3
Lsat_1_v5_gn_8_90440 Lactuca sativa HOM05D003512 ORTHO05D004013 9.5e-19 97.1 135 48.1
HanXRQChr15g0468101 Helianthus annuus HOM05D003512 ORTHO05D004013 3.6e-18 95.1 139 54.0
Manes.12G040000 Manihot esculenta HOM05D003512 ORTHO05D004013 3.6e-18 95.1 148 53.4
FAN15G0220 Fragaria x ananassa HOM05D003512 ORTHO05D004013 6.2e-18 94.4 144 47.2
HanXRQChr10g0287201 Helianthus annuus HOM05D003512 ORTHO05D004013 1.1e-17 93.6 135 48.1
COL.COLO4_36321 Corchorus olitorius HOM05D003512 ORTHO05D004013 1.4e-17 93.2 138 60.1
Potri.002G253800 Populus trichocarpa HOM05D003512 ORTHO05D004013 1.4e-17 93.2 141 47.5
Thecc.01G245400 Theobroma cacao HOM05D003512 ORTHO05D004013 2.3e-17 92.4 142 56.3
TWI23G0432 Tripterygium wilfordii HOM05D003512 ORTHO05D004013 2.3e-17 92.4 144 50.0
VMungo0720G2276 Vigna mungo HOM05D003512 ORTHO05D004013 2.3e-17 92.4 132 61.4
FvH4_2g19960 Fragaria vesca HOM05D003512 ORTHO05D004013 3.1e-17 92.0 144 46.5
Sabra02G0192900 Salix brachista HOM05D003512 ORTHO05D004013 3.1e-17 92.0 159 44.0
Atru.chr5.1920 Acer truncatum HOM05D003512 ORTHO05D004013 4.0e-17 91.7 142 59.9
Lalb_Chr21g0314191 Lupinus albus HOM05D003512 ORTHO05D004013 4.0e-17 91.7 145 49.0
Oeu026192.1 Olea europaea HOM05D003512 ORTHO05D004013 4.0e-17 91.7 135 48.9
Dinv43039 Davidia involucrata HOM05D003512 ORTHO05D004013 5.2e-17 91.3 133 65.4
HanXRQChr13g0408961 Helianthus annuus HOM05D003512 ORTHO05D004013 5.2e-17 91.3 138 47.1
Ca_08765_v3 Cicer arietinum L. HOM05D003512 ORTHO05D004013 6.8e-17 90.9 140 45.7
Nitab4.5_0004777g0040 Nicotiana tabacum HOM05D003512 ORTHO05D004013 6.8e-17 90.9 142 53.5
arahy.Tifrunner.gnm1.ann1.110G34 Arachis hypogaea HOM05D003512 ORTHO05D004013 8.9e-17 90.5 150 62.7
Thhalv10026332m.g Eutrema salsugineum HOM05D003512 ORTHO05D004013 8.9e-17 90.5 115 60.0
Medtr7g099390 Medicago truncatula HOM05D003512 ORTHO05D004013 8.9e-17 90.5 142 47.9
arahy.Tifrunner.gnm1.ann1.DHZ2RQ Arachis hypogaea HOM05D003512 ORTHO05D004013 1.2e-16 90.1 150 62.0
vmacro19972 Vaccinium macrocarpon HOM05D003512 ORTHO05D004013 1.5e-16 89.7 145 60.0
ECA247G0853 Erigeron canadensis HOM05D003512 ORTHO05D004013 2.0e-16 89.4 135 55.6
FAN27G0931 Fragaria x ananassa HOM05D003512 ORTHO05D004013 2.6e-16 89.0 144 45.8
RcHm_v2.0_Chr6g0285621 Rosa chinensis HOM05D003512 ORTHO05D004013 2.6e-16 89.0 146 44.5
PGSC0003DMG400022022 Solanum tuberosum HOM05D003512 ORTHO05D004013 2.6e-16 89.0 143 47.6
Hma1.2p1_0123F.1_g058160 Hydrangea macrophylla HOM05D003512 ORTHO05D004013 3.4e-16 88.6 146 52.7
Lalb_Chr06g0170911 Lupinus albus HOM05D003512 ORTHO05D004013 3.4e-16 88.6 140 45.7
Solyc09g063130.3 Solanum lycopersicum HOM05D003512 ORTHO05D004013 3.4e-16 88.6 142 47.9
arahy.Tifrunner.gnm1.ann1.QW0L8Q Arachis hypogaea HOM05D003512 ORTHO05D004013 5.8e-16 87.8 143 46.2
MBI07_g08920_MAGBIO Magnolia biondii HOM05D003512 ORTHO05D004013 7.5e-16 87.4 43 95.3
Manes.13G042400 Manihot esculenta HOM05D003512 ORTHO05D004013 7.5e-16 87.4 146 54.8
COL.COLO4_07003 Corchorus olitorius HOM05D003512 ORTHO05D004013 1.3e-15 86.7 154 49.4
Duzib211G0535 Durio zibethinus HOM05D003512 ORTHO05D004013 1.3e-15 86.7 142 53.5
Phvul.008G133700 Phaseolus vulgaris HOM05D003512 ORTHO05D004013 1.3e-15 86.7 131 58.8
Sopen09g025300 Solanum pennellii HOM05D003512 ORTHO05D004013 1.3e-15 86.7 142 47.2
Haze_24736 Corylus avellana HOM05D003512 ORTHO05D004013 1.7e-15 86.3 144 47.2
MD10G1171800 Malus domestica HOM05D003512 ORTHO05D004013 1.7e-15 86.3 146 52.1
Oeu047197.1 Olea europaea HOM05D003512 ORTHO05D004013 1.7e-15 86.3 135 45.2
Phvul.007G155500 Phaseolus vulgaris HOM05D003512 ORTHO05D004013 2.2e-15 85.9 133 58.6
Gorai.001G235800 Gossypium raimondii HOM05D003512 ORTHO05D004013 2.9e-15 85.5 145 49.0
Lsat_1_v5_gn_9_12001 Lactuca sativa HOM05D003512 ORTHO05D004013 2.9e-15 85.5 137 62.0
Lalb_Chr25g0289731 Lupinus albus HOM05D003512 ORTHO05D004013 2.9e-15 85.5 142 43.7
Thecc.05G265600 Theobroma cacao HOM05D003512 ORTHO05D004013 2.9e-15 85.5 155 46.5
arahy.Tifrunner.gnm1.ann1.HB1P9N Arachis hypogaea HOM05D003512 ORTHO05D004013 3.7e-15 85.1 150 59.3
Ca_09628_v3 Cicer arietinum L. HOM05D003512 ORTHO05D004013 4.9e-15 84.7 141 45.4
Duzib138G0098 Durio zibethinus HOM05D003512 ORTHO05D004013 8.3e-15 84.0 144 54.2
Hma1.2p1_1393F.1_g280270 Hydrangea macrophylla HOM05D003512 ORTHO05D004013 8.3e-15 84.0 172 49.4
Peaxi162Scf00043g00067 Petunia axillaris HOM05D003512 ORTHO05D004013 8.3e-15 84.0 142 47.9
PGR142G3520 Punica granatum HOM05D003512 ORTHO05D004013 8.3e-15 84.0 144 50.0
TAR362G0114 Trochodendron aralioides HOM05D003512 ORTHO05D004013 8.3e-15 84.0 135 54.8
vmacro02722 Vaccinium macrocarpon HOM05D003512 ORTHO05D004013 8.3e-15 84.0 133 46.6
BcaNung01368 Brassica carinata HOM05D003512 ORTHO05D004013 1.1e-14 83.6 140 55.7
C01p10750 Brassica napus HOM05D003512 ORTHO05D004013 1.1e-14 83.6 140 55.0
BolC1t01034H Brassica oleracea HOM05D003512 ORTHO05D004013 1.1e-14 83.6 140 55.0
DCAR_018535 Daucus carota HOM05D003512 ORTHO05D004013 1.1e-14 83.6 139 55.4
Lj5g0026666 Lotus japonicus HOM05D003512 ORTHO05D004013 1.1e-14 83.6 135 57.0
CAN.G311.8 Capsicum annuum HOM05D003512 ORTHO05D004013 1.4e-14 83.2 136 51.5
Duzib133G0561 Durio zibethinus HOM05D003512 ORTHO05D004013 1.4e-14 83.2 142 45.1
MD05G1183900 Malus domestica HOM05D003512 ORTHO05D004013 1.4e-14 83.2 146 43.2
Nitab4.5_0001557g0070 Nicotiana tabacum HOM05D003512 ORTHO05D004013 1.9e-14 82.8 126 56.3
Rhsim13G0041600 Rhododendron simsii HOM05D003512 ORTHO05D004013 1.9e-14 82.8 138 46.4
A01p09160 Brassica napus HOM05D003512 ORTHO05D004013 2.4e-14 82.4 140 49.3
BraA01t00862Z Brassica rapa HOM05D003512 ORTHO05D004013 2.4e-14 82.4 140 52.9
EL10Ac7g17751 Beta vulgaris HOM05D003512 ORTHO05D004013 3.2e-14 82.0 112 59.8
Sp7g26760 Schrenkiella parvula HOM05D003512 ORTHO05D004013 3.2e-14 82.0 140 45.0
Ciclev10022750m.g Citrus clementina HOM05D003512 ORTHO05D004013 5.4e-14 81.3 144 47.9
ECA236G1700 Erigeron canadensis HOM05D003512 ORTHO05D004013 7.0e-14 80.9 135 44.4
Glyma.10G042000 Glycine max HOM05D003512 ORTHO05D004013 7.0e-14 80.9 136 58.1
Glyma.13G129500 Glycine max HOM05D003512 ORTHO05D004013 7.0e-14 80.9 132 58.3
Gohir.D08G056700 Gossypium hirsutum HOM05D003512 ORTHO05D004013 7.0e-14 80.9 148 52.7
Oeu017338.1 Olea europaea HOM05D003512 ORTHO05D004013 7.0e-14 80.9 135 54.1
BcaNung07172 Brassica carinata HOM05D003512 ORTHO05D004013 1.2e-13 80.1 138 55.1
CDE02G1659 Ceratophyllum demersum HOM05D003512 ORTHO05D004013 1.2e-13 80.1 133 45.1
Glyma.13G129400 Glycine max HOM05D003512 ORTHO05D004013 1.2e-13 80.1 132 56.1
TWI34G1801 Tripterygium wilfordii HOM05D003512 ORTHO05D004013 1.2e-13 80.1 144 44.4
Actinidia37567 Actinidia chinensis HOM05D003512 ORTHO05D004013 1.6e-13 79.7 115 47.0
Carub.0003s3459 Capsella rubella HOM05D003512 ORTHO05D004013 1.6e-13 79.7 147 53.1
Lalb_Chr02g0152921 Lupinus albus HOM05D003512 ORTHO05D004013 2.0e-13 79.3 159 47.2
CARHR110760 Cardamine hirsuta HOM05D003512 ORTHO05D004013 2.7e-13 79.0 142 43.7
CARHR236540 Cardamine hirsuta HOM05D003512 ORTHO05D004013 2.7e-13 79.0 134 45.5
Medtr1g069235 Medicago truncatula HOM05D003512 ORTHO05D004013 2.7e-13 79.0 147 48.3
AT2G20260 Arabidopsis thaliana HOM05D003512 ORTHO05D004013 3.5e-13 78.6 144 51.4
arahy.Tifrunner.gnm1.ann1.PI6GK2 Arachis hypogaea HOM05D003512 ORTHO05D004013 3.5e-13 78.6 150 57.3
MSTRG.21447 Avicennia marina HOM05D003512 ORTHO05D004013 3.5e-13 78.6 150 44.0
Thhalv10002106m.g Eutrema salsugineum HOM05D003512 ORTHO05D004013 3.5e-13 78.6 146 50.7
Glyma.10G042100 Glycine max HOM05D003512 ORTHO05D004013 3.5e-13 78.6 132 57.6
Gorai.004G057800 Gossypium raimondii HOM05D003512 ORTHO05D004013 3.5e-13 78.6 148 52.0
Migut.N02242 Erythranthe guttata HOM05D003512 ORTHO05D004013 4.6e-13 78.2 137 54.7
TAR365G0283 Trochodendron aralioides HOM05D003512 ORTHO05D004013 4.6e-13 78.2 138 59.4
Aa31LG2G21620 Aethionema arabicum HOM05D003512 ORTHO05D004013 6.0e-13 77.8 137 43.1
arahy.Tifrunner.gnm1.ann1.TN6DUA Arachis hypogaea HOM05D003512 ORTHO05D004013 6.0e-13 77.8 143 54.5
Cc01_g17500 Coffea canephora HOM05D003512 ORTHO05D004013 6.0e-13 77.8 143 55.9
Gohir.A08G046200 Gossypium hirsutum HOM05D003512 ORTHO05D004013 6.0e-13 77.8 148 50.7
Zm00001eb306070 Zea mays HOM05D003512 ORTHO05D004013 7.8e-13 77.4 137 41.6
Solyc06g083680.3 Solanum lycopersicum HOM05D003512 ORTHO05D004013 1.0e-12 77.0 139 51.1
Sopen06g035100 Solanum pennellii HOM05D003512 ORTHO05D004013 1.0e-12 77.0 139 51.1
TWI59G0010 Tripterygium wilfordii HOM05D003512 ORTHO05D004013 1.0e-12 77.0 138 44.9
BcaC07g38359 Brassica carinata HOM05D003512 ORTHO05D004013 1.3e-12 76.6 140 55.0
A08p19920 Brassica napus HOM05D003512 ORTHO05D004013 1.3e-12 76.6 140 54.3
C08p11070 Brassica napus HOM05D003512 ORTHO05D004013 1.3e-12 76.6 140 55.0
BraA08t33949Z Brassica rapa HOM05D003512 ORTHO05D004013 1.3e-12 76.6 140 54.3
Actinidia30108 Actinidia chinensis HOM05D003512 ORTHO05D004013 1.7e-12 76.3 137 54.7
BcaB03g12587 Brassica carinata HOM05D003512 ORTHO05D004013 1.7e-12 76.3 141 49.6
BolC8t48776H Brassica oleracea HOM05D003512 ORTHO05D004013 1.7e-12 76.3 140 53.6
Gohir.D07G208800 Gossypium hirsutum HOM05D003512 ORTHO05D004013 1.7e-12 76.3 142 49.3
CSS0050291 Camellia sinensis var. sinensis HOM05D003512 ORTHO05D004013 2.3e-12 75.9 65 64.6
FAN24G0321 Fragaria x ananassa HOM05D003512 ORTHO05D004013 2.3e-12 75.9 186 36.0
Gohir.A07G202600 Gossypium hirsutum HOM05D003512 ORTHO05D004013 2.3e-12 75.9 143 49.0
Rhsim05G0169700 Rhododendron simsii HOM05D003512 ORTHO05D004013 2.3e-12 75.9 65 64.6
Sp3g33490 Schrenkiella parvula HOM05D003512 ORTHO05D004013 2.3e-12 75.9 146 51.4
Cpa.g.sc8.213 Carica papaya HOM05D003512 ORTHO05D004013 3.0e-12 75.5 144 47.9
CiPaw.04G192200 Carya illinoinensis HOM05D003512 ORTHO05D004013 3.0e-12 75.5 141 53.2
Zm00001eb096870 Zea mays HOM05D003512 ORTHO05D004013 3.0e-12 75.5 142 44.4
GSVIVG01028481001 Vitis vinifera HOM05D003512 ORTHO05D004013 5.0e-12 74.7 63 65.1
Carub.0007s1189 Capsella rubella HOM05D003512 ORTHO05D004013 8.6e-12 73.9 138 50.7
CAN.G771.48 Capsicum annuum HOM05D003512 ORTHO05D004013 8.6e-12 73.9 65 63.1
DCAR_012618 Daucus carota HOM05D003512 ORTHO05D004013 8.6e-12 73.9 141 42.6
Peaxi162Scf00517g00118 Petunia axillaris HOM05D003512 ORTHO05D004013 8.6e-12 73.9 140 50.0
Prupe.8G210000 Prunus persica HOM05D003512 ORTHO05D004013 8.6e-12 73.9 65 63.1
AL7G23750 Arabidopsis lyrata HOM05D003512 ORTHO05D004013 1.1e-11 73.6 139 53.2
CDE09G0441 Ceratophyllum demersum HOM05D003512 ORTHO05D004013 1.1e-11 73.6 133 44.4
AUR62025395 Chenopodium quinoa HOM05D003512 ORTHO05D004013 1.1e-11 73.6 64 62.5
Dinv19249 Davidia involucrata HOM05D003512 ORTHO05D004013 1.1e-11 73.6 36 97.2
Eucgr.B02162 Eucalyptus grandis HOM05D003512 ORTHO05D004013 1.1e-11 73.6 143 42.0
Nitab4.5_0004333g0020 Nicotiana tabacum HOM05D003512 ORTHO05D004013 1.1e-11 73.6 65 61.5
Sed0015250 Sechium edule HOM05D003512 ORTHO05D004013 1.1e-11 73.6 136 41.2
CiPaw.03G273300 Carya illinoinensis HOM05D003512 ORTHO05D004013 1.5e-11 73.2 134 47.8
Eucgr.H00828 Eucalyptus grandis HOM05D003512 ORTHO05D004013 1.5e-11 73.2 136 55.1
Ah.08g213830 Amaranthus hybridus HOM05D003512 ORTHO05D004013 1.9e-11 72.8 63 61.9
AT4G28750 Arabidopsis thaliana HOM05D003512 ORTHO05D004013 1.9e-11 72.8 139 58.3
HanXRQChr11g0327281 Helianthus annuus HOM05D003512 ORTHO05D004013 2.5e-11 72.4 148 40.5
PSO764G0144 Papaver somniferum HOM05D003512 ORTHO05D004013 2.5e-11 72.4 65 63.1
PSO832G4467 Papaver somniferum HOM05D003512 ORTHO05D004013 2.5e-11 72.4 65 63.1
THA.LOC104804030 Tarenaya hassleriana HOM05D003512 ORTHO05D004013 2.5e-11 72.4 146 45.2
CSS0026330 Camellia sinensis var. sinensis HOM05D003512 ORTHO05D004013 3.3e-11 72.0 63 61.9
CANSAT01G3044 Cannabis sativa HOM05D003512 ORTHO05D004013 3.3e-11 72.0 65 61.5
Lsat_1_v5_gn_2_15600 Lactuca sativa HOM05D003512 ORTHO05D004013 3.3e-11 72.0 149 43.6
Hund21755 Selenicereus undatus HOM05D003512 ORTHO05D004013 3.3e-11 72.0 65 60.0
PGSC0003DMG400020154 Solanum tuberosum HOM05D003512 ORTHO05D004013 3.3e-11 72.0 63 61.9
Ah.15g093440 Amaranthus hybridus HOM05D003512 ORTHO05D004013 4.3e-11 71.6 35 97.1
AUR62008851 Chenopodium quinoa HOM05D003512 ORTHO05D004013 4.3e-11 71.6 35 94.3
Gohir.A11G135000 Gossypium hirsutum HOM05D003512 ORTHO05D004013 4.3e-11 71.6 65 61.5
Gohir.D11G141200 Gossypium hirsutum HOM05D003512 ORTHO05D004013 4.3e-11 71.6 65 61.5
Gorai.007G151500 Gossypium raimondii HOM05D003512 ORTHO05D004013 4.3e-11 71.6 65 61.5
Oeu039643.2 Olea europaea HOM05D003512 ORTHO05D004013 4.3e-11 71.6 136 55.9
TPR.G20608 Trifolium pratense HOM05D003512 ORTHO05D004013 4.3e-11 71.6 63 61.9
SGA_v2.0_scaffold1G00682 Striga asiatica HOM05D003512 ORTHO05D004013 5.6e-11 71.2 154 53.2
TWI32G0368 Tripterygium wilfordii HOM05D003512 ORTHO05D004013 7.3e-11 70.9 63 60.3
THA.LOC104820062 Tarenaya hassleriana HOM05D003512 ORTHO05D004013 9.5e-11 70.5 65 60.0
Migut.D00498 Erythranthe guttata HOM05D003512 ORTHO05D004013 1.6e-10 69.7 139 51.1
Os07g0435300 Oryza sativa ssp. japonica HOM05D003512 ORTHO05D004013 1.6e-10 69.7 65 61.5
CsaV3_2G010090 Cucumis sativus L. HOM05D003512 ORTHO05D004013 2.8e-10 68.9 63 60.3
Hund18341 Selenicereus undatus HOM05D003512 ORTHO05D004013 2.8e-10 68.9 133 40.6
BcaC06g32605 Brassica carinata HOM05D003512 ORTHO05D004013 3.6e-10 68.6 141 52.5
Sed0000934 Sechium edule HOM05D003512 ORTHO05D004013 3.6e-10 68.6 142 47.2
ClCG11G010230 Citrullus lanatus HOM05D003512 ORTHO05D004013 4.7e-10 68.2 63 58.7
THA.LOC104814542 Tarenaya hassleriana HOM05D003512 ORTHO05D004013 1.1e-09 67.0 137 40.1
Aa31LG8G17250 Aethionema arabicum HOM05D003512 ORTHO05D004013 1.4e-09 66.6 149 39.6
Nitab4.5_0000385g0230 Nicotiana tabacum HOM05D003512 ORTHO05D004013 1.8e-09 66.2 117 42.7
AL3G47830 Arabidopsis lyrata HOM05D003512 ORTHO05D004013 2.3e-09 65.9 177 41.2
HanXRQChr01g0014791 Helianthus annuus HOM05D003512 ORTHO05D004013 3.1e-09 65.5 34 85.3
HPP92_027295 Vanilla planifolia HOM05D003512 ORTHO05D004013 5.2e-09 64.7 62 56.5
ATR0787G081 Amborella trichopoda HOM05D003512 ORTHO05D004013 1.5e-08 63.2 133 42.9
SEGI_17443 Sequoiadendron giganteum HOM05D003512 ORTHO05D004013 2.0e-08 62.8 65 53.8
SalBow6G4606 Salvia bowleyana HOM05D003512 ORTHO05D004013 3.4e-08 62.0 133 54.1
Lsat_1_v5_gn_5_179160 Lactuca sativa HOM05D003512 ORTHO05D004013 2.2e-07 59.3 116 40.5
C07p56420 Brassica napus HOM05D003512 ORTHO05D004013 8.3e-07 57.4 39 64.1
unitig_85.g27272 Utricularia gibba HOM05D003512 ORTHO05D004013 1.9e-06 56.2 143 32.9
unitig_699.g19325 Utricularia gibba HOM05D003512 ORTHO05D004013 3.2e-06 55.5 134 34.3
CBR_g17684 Chara braunii HOM05D003512 ORTHO05D004013 5.4e-06 54.7 29 86.2


User provided reference genes

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