Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g03063 Nelumbo nucifera HOM05D003628 ORTHO05D004253 0.0e+00 1508.4 814 100.0
TAR362G1171 Trochodendron aralioides HOM05D003628 ORTHO05D004253 1.9e-214 750.0 806 58.8
TAR633G2428 Trochodendron aralioides HOM05D003628 ORTHO05D004253 6.1e-200 701.8 845 53.5
Dinv27142 Davidia involucrata HOM05D003628 ORTHO05D004253 8.2e-189 664.8 842 52.4
GSVIVG01029001001 Vitis vinifera HOM05D003628 ORTHO05D004253 5.3e-188 662.1 835 54.1
Nn3g19840 Nelumbo nucifera HOM05D003628 ORTHO05D004253 7.5e-182 641.7 828 51.8
QL06p022355 Quercus lobata HOM05D003628 ORTHO05D004253 3.1e-180 636.3 826 52.3
Hma1.2p1_1241F.1_g269760 Hydrangea macrophylla HOM05D003628 ORTHO05D004253 8.3e-173 611.7 824 50.8
Atru.chr4.1847 Acer truncatum HOM05D003628 ORTHO05D004253 5.4e-164 582.4 840 49.5
TAR365G0848 Trochodendron aralioides HOM05D003628 ORTHO05D004253 2.5e-161 573.5 803 49.8
Dinv29776 Davidia involucrata HOM05D003628 ORTHO05D004253 6.1e-160 568.9 640 55.6
Manes.15G048200 Manihot esculenta HOM05D003628 ORTHO05D004253 4.0e-159 566.2 837 48.9
Actinidia39943 Actinidia chinensis HOM05D003628 ORTHO05D004253 2.2e-157 560.5 826 47.7
MBI05_g37047_MAGBIO Magnolia biondii HOM05D003628 ORTHO05D004253 3.2e-156 556.6 839 47.8
CANSAT78G2050 Cannabis sativa HOM05D003628 ORTHO05D004253 2.0e-155 553.9 829 47.4
PSO832G4023 Papaver somniferum HOM05D003628 ORTHO05D004253 3.5e-155 553.1 833 49.0
TWI73G0229 Tripterygium wilfordii HOM05D003628 ORTHO05D004253 5.0e-154 549.3 831 48.0
Potri.010G062000 Populus trichocarpa HOM05D003628 ORTHO05D004253 3.1e-151 540.0 832 49.5
Ca_11787_v3 Cicer arietinum L. HOM05D003628 ORTHO05D004253 6.8e-151 538.9 832 46.5
PSO764G0031 Papaver somniferum HOM05D003628 ORTHO05D004253 1.3e-149 534.6 825 48.0
TWI09G0941 Tripterygium wilfordii HOM05D003628 ORTHO05D004253 1.6e-147 527.7 837 47.3
Gorai.011G164000 Gossypium raimondii HOM05D003628 ORTHO05D004253 5.0e-146 522.7 820 47.3
CSS0021427 Camellia sinensis var. sinensis HOM05D003628 ORTHO05D004253 7.3e-145 518.8 846 45.4
Gohir.D10G146700 Gossypium hirsutum HOM05D003628 ORTHO05D004253 8.1e-144 515.4 820 47.3
FAN22G0313 Fragaria x ananassa HOM05D003628 ORTHO05D004253 1.8e-143 514.2 840 46.0
ATR0580G379 Amborella trichopoda HOM05D003628 ORTHO05D004253 8.9e-143 511.9 811 47.3
Gohir.A02G025400 Gossypium hirsutum HOM05D003628 ORTHO05D004253 4.4e-142 509.6 830 46.1
Glyma.20G079600 Glycine max HOM05D003628 ORTHO05D004253 9.9e-142 508.4 846 44.8
TPR.G23641 Trifolium pratense HOM05D003628 ORTHO05D004253 1.7e-141 507.7 838 45.9
Manes.03G155400 Manihot esculenta HOM05D003628 ORTHO05D004253 1.4e-140 504.6 828 46.3
Gorai.005G036000 Gossypium raimondii HOM05D003628 ORTHO05D004253 5.4e-140 502.7 830 45.9
arahy.Tifrunner.gnm1.ann1.STBA65 Arachis hypogaea HOM05D003628 ORTHO05D004253 1.3e-138 498.0 834 45.0
Cc03_g07010 Coffea canephora HOM05D003628 ORTHO05D004253 1.1e-137 495.0 821 45.7
CiPaw.01G174500 Carya illinoinensis HOM05D003628 ORTHO05D004253 7.3e-137 492.3 819 44.0
Hma1.2p1_0574F.1_g181510 Hydrangea macrophylla HOM05D003628 ORTHO05D004253 7.3e-137 492.3 473 63.0
Lalb_Chr01g0011261 Lupinus albus HOM05D003628 ORTHO05D004253 2.1e-136 490.7 840 44.6
CSS0020381 Camellia sinensis var. sinensis HOM05D003628 ORTHO05D004253 2.8e-136 490.3 694 48.3
RcHm_v2.0_Chr4g0396341 Rosa chinensis HOM05D003628 ORTHO05D004253 2.4e-135 487.3 836 45.3
Lj6g0006649 Lotus japonicus HOM05D003628 ORTHO05D004253 6.8e-135 485.7 785 45.6
Sabra10G0044300 Salix brachista HOM05D006620 ORTHO05D008921 1.2e-134 485.0 779 47.4
Psat6g109680 Pisum sativum HOM05D003628 ORTHO05D004253 4.4e-134 483.0 840 44.2
Peaxi162Scf01007g00014 Petunia axillaris HOM05D003628 ORTHO05D004253 7.6e-134 482.3 851 42.9
CsaV3_2G012280 Cucumis sativus L. HOM05D003628 ORTHO05D004253 4.9e-133 479.6 853 43.5
arahy.Tifrunner.gnm1.ann1.7KG1FV Arachis hypogaea HOM05D003628 ORTHO05D004253 8.4e-133 478.8 833 44.2
Sc19g0002160 Simmondsia chinensis HOM05D003628 ORTHO05D004253 1.3e-130 471.5 826 43.5
Gohir.D02G032600 Gossypium hirsutum HOM05D003628 ORTHO05D004253 6.6e-130 469.2 830 44.2
PGR142G1422 Punica granatum HOM05D003628 ORTHO05D004253 8.6e-130 468.8 837 43.6
Nitab4.5_0002738g0080 Nicotiana tabacum HOM05D003628 ORTHO05D004253 7.3e-129 465.7 855 41.5
Thecc.04G217100 Theobroma cacao HOM05D003628 ORTHO05D004253 9.6e-129 465.3 819 44.9
Gorai.006G218800 Gossypium raimondii HOM05D003628 ORTHO05D004253 2.8e-128 463.8 820 44.1
Lalb_Chr03g0036821 Lupinus albus HOM05D003628 ORTHO05D004253 6.2e-128 462.6 852 43.2
Haze_11526 Corylus avellana HOM05D003628 ORTHO05D004253 4.0e-127 459.9 899 39.5
Nitab4.5_0001998g0040 Nicotiana tabacum HOM05D003628 ORTHO05D004253 6.9e-127 459.1 861 43.2
THA.LOC104821624 Tarenaya hassleriana HOM05D003628 ORTHO05D004253 1.5e-126 458.0 831 42.8
Gohir.D09G195400 Gossypium hirsutum HOM05D003628 ORTHO05D004253 7.6e-126 455.7 820 44.0
Duzib212G0614 Durio zibethinus HOM05D003628 ORTHO05D004253 1.7e-125 454.5 827 43.5
Medtr1g046350 Medicago truncatula HOM05D003628 ORTHO05D004253 3.2e-124 450.3 829 43.1
Sabra08G0133300 Salix brachista HOM05D003628 ORTHO05D004253 7.1e-124 449.1 854 44.4
EL10Ac3g06305 Beta vulgaris HOM05D003628 ORTHO05D004253 9.3e-124 448.7 832 45.0
Rhsim02G0049400 Rhododendron simsii HOM05D003628 ORTHO05D004253 3.5e-123 446.8 824 43.3
Ciclev10004333m.g Citrus clementina HOM05D003628 ORTHO05D004253 7.8e-123 445.7 832 43.0
FvH4_4g05311 Fragaria vesca HOM05D003628 ORTHO05D004253 1.0e-122 445.3 843 42.7
AUR62030025 Chenopodium quinoa HOM05D003628 ORTHO05D004253 3.9e-122 443.4 819 43.5
Sopen12g032860 Solanum pennellii HOM05D003628 ORTHO05D004253 6.6e-122 442.6 855 42.2
Duzib151G0300 Durio zibethinus HOM05D003628 ORTHO05D004253 4.3e-121 439.9 827 43.9
Solyc12g097070.3 Solanum lycopersicum HOM05D003628 ORTHO05D004253 9.6e-121 438.7 859 41.4
Migut.G00600 Erythranthe guttata HOM05D003628 ORTHO05D004253 2.0e-118 431.0 835 42.2
Gohir.A09G201200 Gossypium hirsutum HOM05D003628 ORTHO05D004253 5.8e-118 429.5 820 42.0
CAN.G566.2 Capsicum annuum HOM05D003628 ORTHO05D004253 9.9e-118 428.7 818 41.4
FAN07G2212 Fragaria x ananassa HOM05D003628 ORTHO05D004253 1.7e-117 427.9 839 42.1
CiPaw.02G103800 Carya illinoinensis HOM05D003628 ORTHO05D004253 6.4e-117 426.0 443 60.3
Prupe.1G054700 Prunus persica HOM05D003628 ORTHO05D004253 6.4e-117 426.0 842 42.8
MD16G1232700 Malus domestica HOM05D003628 ORTHO05D004253 1.9e-116 424.5 833 42.5
Lalb_Chr19g0128621 Lupinus albus HOM05D003628 ORTHO05D004253 3.2e-116 423.7 836 41.0
FAN12G2520 Fragaria x ananassa HOM05D003628 ORTHO05D004253 4.2e-116 423.3 1020 37.4
MELO3C023064.2 Cucumis melo HOM05D003628 ORTHO05D004253 3.5e-115 420.2 864 40.5
MSTRG.4198 Avicennia marina HOM05D003628 ORTHO05D004253 3.9e-114 416.8 821 41.2
Sed0002438 Sechium edule HOM05D003628 ORTHO05D004253 1.5e-113 414.8 865 39.9
Phvul.007G238700 Phaseolus vulgaris HOM05D003628 ORTHO05D004253 1.9e-113 414.5 832 41.1
Potri.008G174800 Populus trichocarpa HOM05D003628 ORTHO05D004253 7.4e-113 412.5 833 43.3
Ah.07g204120 Amaranthus hybridus HOM05D003628 ORTHO05D004253 4.0e-111 406.8 844 40.4
THA.LOC104804570 Tarenaya hassleriana HOM05D003628 ORTHO05D004253 1.7e-109 401.4 822 40.4
AUR62002607 Chenopodium quinoa HOM05D003628 ORTHO05D004253 6.4e-109 399.4 438 57.8
Cfa014840 Carpinus fangiana HOM05D003628 ORTHO05D004253 1.2e-107 395.2 827 39.7
DCAR_027362 Daucus carota HOM05D003628 ORTHO05D004253 3.3e-105 387.1 796 39.7
vmacro15908 Vaccinium macrocarpon HOM05D003628 ORTHO05D004253 7.4e-105 386.0 821 40.0
VMungo0720G2372 Vigna mungo HOM05D003628 ORTHO05D004253 9.6e-105 385.6 860 38.4
Sed0008500 Sechium edule HOM05D003628 ORTHO05D004253 1.3e-104 385.2 857 38.7
Eucgr.H00111 Eucalyptus grandis HOM05D003628 ORTHO05D004253 1.4e-103 381.7 839 40.0
SGA_v2.0_scaffold57G20181 Striga asiatica HOM05D003628 ORTHO05D004253 1.4e-103 381.7 824 38.5
Nitab4.5_0000451g0120 Nicotiana tabacum HOM05D003628 ORTHO05D004253 2.0e-102 377.9 818 40.0
Aqoxy1G00125 Aquilegia oxysepala HOM05D003628 ORTHO05D004253 5.8e-102 376.3 833 39.5
BraA07t28601Z Brassica rapa HOM05D003628 ORTHO05D004253 7.6e-102 375.9 701 40.5
Lj3A630T50 Lonicera japonica HOM05D003628 ORTHO05D004253 1.7e-101 374.8 737 41.2
CDE07G1740 Ceratophyllum demersum HOM05D003628 ORTHO05D004253 1.2e-99 368.6 838 39.1
HPP92_014197 Vanilla planifolia HOM05D003628 ORTHO05D004253 1.3e-98 365.2 829 37.0
Peaxi162Scf00047g00163 Petunia axillaris HOM05D003628 ORTHO05D004253 1.6e-96 358.2 824 40.0
Solyc09g091120.3 Solanum lycopersicum HOM05D003628 ORTHO05D004253 2.2e-96 357.8 852 40.0
Zm00001eb143670 Zea mays HOM05D003628 ORTHO05D004253 2.2e-96 357.8 828 37.8
ClCG06G007410 Citrullus lanatus HOM05D003628 ORTHO05D004253 1.4e-95 355.1 844 37.3
BcaB03g14597 Brassica carinata HOM05D003628 ORTHO05D004253 1.8e-95 354.8 571 43.3
unitig_748.g7341 Utricularia gibba HOM05D003628 ORTHO05D004253 1.8e-95 354.8 493 49.9
BcaB06g26600 Brassica carinata HOM05D003628 ORTHO05D004253 6.9e-95 352.8 573 43.6
Zm00001eb365010 Zea mays HOM05D003628 ORTHO05D004253 6.5e-93 346.3 819 37.4
Os01g0911800 Oryza sativa ssp. japonica HOM05D003628 ORTHO05D004253 1.1e-92 345.5 622 42.8
Sopen09g034100 Solanum pennellii HOM05D003628 ORTHO05D004253 1.1e-92 345.5 844 38.5
Thhalv10002420m.g Eutrema salsugineum HOM05D003628 ORTHO05D004253 1.3e-90 338.6 829 37.3
BcaB04g20394 Brassica carinata HOM05D003628 ORTHO05D004253 1.1e-89 335.5 443 50.1
ECA234G0302 Erigeron canadensis HOM05D003628 ORTHO05D004253 1.5e-89 335.1 601 43.4
C07p12290 Brassica napus HOM05D003628 ORTHO05D004253 3.3e-89 334.0 485 46.6
C07p12320 Brassica napus HOM05D003628 ORTHO05D004253 4.3e-89 333.6 577 41.9
Sp3g21980 Schrenkiella parvula HOM05D003628 ORTHO05D004253 7.4e-89 332.8 826 36.3
CAN.G812.46 Capsicum annuum HOM05D003628 ORTHO05D004253 1.3e-88 332.0 827 38.9
Glyma.10G128350 Glycine max HOM05D003628 ORTHO05D004253 6.9e-87 326.2 305 63.0
HPP92_026454 Vanilla planifolia HOM05D003628 ORTHO05D004253 2.2e-85 321.2 584 41.8
HanXRQChr10g0311151 Helianthus annuus HOM05D003628 ORTHO05D004253 5.0e-85 320.1 592 42.9
AT3G23980 Arabidopsis thaliana HOM05D003628 ORTHO05D004253 6.5e-85 319.7 814 36.5
Cpa.g.sc59.57 Carica papaya HOM05D003628 ORTHO05D004253 8.5e-85 319.3 663 40.3
Carub.0003s2454 Capsella rubella HOM05D003628 ORTHO05D004253 1.9e-84 318.2 813 36.4
HanXRQChr12g0359881 Helianthus annuus HOM05D003628 ORTHO05D004253 2.7e-83 314.3 638 39.3
A07p08160 Brassica napus HOM05D003628 ORTHO05D004253 6.1e-83 313.2 688 37.2
BolC7t41696H Brassica oleracea HOM05D003628 ORTHO05D004253 5.1e-82 310.1 498 43.8
BcaC06g35665 Brassica carinata HOM05D003628 ORTHO05D004253 1.1e-81 308.9 689 36.7
AL3G39530 Arabidopsis lyrata HOM05D003628 ORTHO05D004253 3.3e-81 307.4 819 34.7
Aa31LG8G10920 Aethionema arabicum HOM05D003628 ORTHO05D004253 1.8e-79 301.6 800 35.8
BraA03t13490Z Brassica rapa HOM05D003628 ORTHO05D004253 1.7e-77 295.0 814 35.5
Lsat_1_v5_gn_5_148361 Lactuca sativa HOM05D003628 ORTHO05D004253 5.0e-77 293.5 555 42.7
CARHR100260 Cardamine hirsuta HOM05D003628 ORTHO05D004253 6.5e-77 293.1 822 34.4
A03p43510 Brassica napus HOM05D003628 ORTHO05D004253 1.2e-75 288.9 812 34.2
BcaC06g35667 Brassica carinata HOM05D003628 ORTHO05D004253 6.7e-74 283.1 580 39.3
BcaC01g03342 Brassica carinata HOM05D003628 ORTHO05D004253 2.4e-71 274.6 635 36.7
BolC3t17608H Brassica oleracea HOM05D003628 ORTHO05D004253 1.6e-70 271.9 609 38.3
Hund12227 Selenicereus undatus HOM05D003628 ORTHO05D004253 2.9e-69 267.7 609 38.3
C03p53470 Brassica napus HOM05D003628 ORTHO05D004253 2.5e-68 264.6 608 37.7
Nitab4.5_0003287g0020 Nicotiana tabacum HOM05D003628 ORTHO05D004253 3.8e-61 240.7 643 37.2
Lj6A641G44 Lonicera japonica HOM05D003628 ORTHO05D004253 8.5e-61 239.6 677 36.2
CDE04G0520 Ceratophyllum demersum HOM05D003628 ORTHO05D004253 3.5e-54 217.6 353 45.9
AagrBONN_evm.TU.Sc2ySwM_362.1684 Anthoceros agrestis HOM05D003628 ORTHO05D004253 6.5e-53 213.4 424 41.0
Pp3c20_15710 Physcomitrium patens HOM05D003628 ORTHO05D004253 6.1e-51 206.8 422 37.4
Mapoly0068s0063 Marchantia polymorpha HOM05D003628 ORTHO05D004253 9.8e-49 199.5 542 36.9
Pp3c24_10590 Physcomitrium patens HOM05D003628 ORTHO05D004253 6.6e-45 186.8 420 36.4
Oeu012942.2 Olea europaea HOM05D003628 ORTHO05D004253 2.4e-39 168.3 164 61.0
CBR_g38414 Chara braunii HOM05D003628 ORTHO05D004253 4.6e-38 164.1 428 32.9
SMO116G0337 Selaginella moellendorffii HOM05D003628 ORTHO05D004253 2.3e-37 161.8 367 37.1
SEGI_10173 Sequoiadendron giganteum HOM05D003628 ORTHO05D004253 8.6e-37 159.8 389 38.8
Oeu023151.1 Olea europaea HOM05D003628 ORTHO05D004253 2.5e-36 158.3 114 72.8
MD13G1227500 Malus domestica HOM05D003628 ORTHO05D004253 1.2e-30 139.4 100 73.0
Glyma.10G128300 Glycine max HOM05D003628 ORTHO05D004253 2.7e-30 138.3 497 31.6
Pp3c23_8100 Physcomitrium patens HOM05D003628 ORTHO05D004253 1.7e-29 135.6 447 30.6
Actinidia11386 Actinidia chinensis HOM05D003628 ORTHO05D004253 5.1e-29 134.0 572 28.3
Hma1.2p1_0112F.1_g055040 Hydrangea macrophylla HOM05D003628 ORTHO05D004253 2.1e-27 128.6 189 51.3
Actinidia11385 Actinidia chinensis HOM05D003628 ORTHO05D004253 1.5e-25 122.5 93 72.0
Hma1.2p1_0112F.1_g055050 Hydrangea macrophylla HOM05D003628 ORTHO05D004253 9.9e-25 119.8 252 40.9
Cpa.g.sc59.56 Carica papaya HOM05D003628 ORTHO05D004253 1.0e-21 109.8 137 51.1
Gohir.D03G086101 Gossypium hirsutum HOM05D003628 ORTHO05D004253 3.6e-19 101.3 62 87.1
Gohir.D09G057732 Gossypium hirsutum HOM05D003628 ORTHO05D004253 3.6e-19 101.3 68 80.9
Gorai.007G071000 Gossypium raimondii HOM05D003628 ORTHO05D004253 4.7e-19 100.9 70 77.1
Gorai.003G076100 Gossypium raimondii HOM05D005297 ORTHO05D006545 8.1e-19 100.1 62 87.1
Gorai.007G244100 Gossypium raimondii HOM05D003628 ORTHO05D004253 3.1e-18 98.2 63 84.1
Hund12233 Selenicereus undatus HOM05D003628 ORTHO05D004253 8.9e-18 96.7 81 66.7
Gohir.D04G116566 Gossypium hirsutum HOM05D003628 ORTHO05D004253 2.6e-17 95.1 66 77.3
AagrBONN_evm.TU.Sc2ySwM_344.5018 Anthoceros agrestis HOM05D003628 ORTHO05D004253 4.4e-17 94.4 143 42.7
Gohir.D11G226200 Gossypium hirsutum HOM05D003628 ORTHO05D004253 2.2e-16 92.0 56 89.3
Gorai.010G154900 Gossypium raimondii HOM05D003628 ORTHO05D004253 1.1e-15 89.7 56 83.9
Gohir.D08G229150 Gossypium hirsutum HOM05D003628 ORTHO05D004253 1.4e-15 89.4 56 83.9
Gohir.D02G158575 Gossypium hirsutum HOM05D003628 ORTHO05D004253 2.4e-15 88.6 56 82.1
Gohir.D06G132966 Gossypium hirsutum HOM05D003628 ORTHO05D004253 2.4e-15 88.6 55 83.6
Oeu023150.1 Olea europaea HOM05D003628 ORTHO05D004253 2.4e-15 88.6 56 76.8
Gohir.D08G165950 Gossypium hirsutum HOM05D003628 ORTHO05D004253 3.0e-13 81.6 50 86.0
Gorai.013G043600 Gossypium raimondii HOM05D003628 ORTHO05D004253 8.7e-13 80.1 50 84.0
Gohir.D11G243366 Gossypium hirsutum HOM05D003628 ORTHO05D004253 4.3e-12 77.8 63 73.0
SHI00869 Sapria himalayana HOM05D003628 ORTHO05D004253 7.3e-12 77.0 77 57.1
PGSC0003DMG402011586 Solanum tuberosum HOM05D003628 ORTHO05D004253 1.2e-11 76.3 63 66.7
Ah.14g082010 Amaranthus hybridus HOM05D003628 ORTHO05D004253 8.1e-11 73.6 51 74.5
Gohir.D01G060866 Gossypium hirsutum HOM05D003628 ORTHO05D004253 2.9e-08 65.1 39 84.6
AL2G14740 Arabidopsis lyrata HOM05D000013 ORTHO05D000011 3.8e-08 64.7 84 51.2
Gohir.A11G239380 Gossypium hirsutum HOM05D003628 ORTHO05D004253 8.4e-08 63.5 39 82.1
Gorai.009G342200 Gossypium raimondii HOM05D003628 ORTHO05D016264 8.4e-08 63.5 43 81.4
Gohir.D01G077750 Gossypium hirsutum HOM05D003628 ORTHO05D004253 1.9e-07 62.4 41 75.6
Gohir.D06G084232 Gossypium hirsutum HOM05D003628 ORTHO05D016264 2.4e-07 62.0 43 79.1
Gohir.D08G175500 Gossypium hirsutum HOM05D003628 ORTHO05D004253 2.4e-07 62.0 39 79.5
MBI04_g25319_MAGBIO Magnolia biondii HOM05D003628 ORTHO05D004253 7.1e-07 60.5 128 39.1
Gorai.003G055900 Gossypium raimondii HOM05D005297 ORTHO05D006545 1.2e-06 59.7 62 56.5
Cre12.g514550 Chlamydomonas reinhardtii HOM05D003628 ORTHO05D004253 4.6e-06 57.8 95 35.8


User provided reference genes

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