Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g03058 Nelumbo nucifera HOM05D003225 ORTHO05D003818 3.0e-31 137.9 70 100.0
Nn1g03053 Nelumbo nucifera HOM05D003225 ORTHO05D003818 2.1e-24 115.2 65 92.3
Aqoxy5G00087 Aquilegia oxysepala HOM05D003225 ORTHO05D003818 2.4e-20 101.7 64 78.1
Ciclev10020430m.g Citrus clementina HOM05D003225 ORTHO05D003818 3.1e-20 101.3 64 76.6
Gohir.A08G046100 Gossypium hirsutum HOM05D003225 ORTHO05D003818 1.5e-19 99.0 64 75.0
Gorai.004G057700 Gossypium raimondii HOM05D003225 ORTHO05D003818 1.5e-19 99.0 64 75.0
Dinv43046 Davidia involucrata HOM05D003225 ORTHO05D003818 3.4e-19 97.8 62 79.0
Glyma.03G169400 Glycine max HOM05D003225 ORTHO05D003818 3.4e-19 97.8 63 74.6
CSS0038579 Camellia sinensis var. sinensis HOM05D003225 ORTHO05D003818 4.5e-19 97.4 59 76.3
ClCG07G001550 Citrullus lanatus HOM05D003225 ORTHO05D003818 5.9e-19 97.1 65 75.4
COL.COLO4_24810 Corchorus olitorius HOM05D003225 ORTHO05D003818 5.9e-19 97.1 64 76.6
QL09p042915 Quercus lobata HOM05D003225 ORTHO05D003818 5.9e-19 97.1 64 76.6
Atru.chr5.1956 Acer truncatum HOM05D003225 ORTHO05D003818 7.7e-19 96.7 64 78.1
CiPaw.04G191600 Carya illinoinensis HOM05D003225 ORTHO05D003818 7.7e-19 96.7 64 75.0
Duzib138G1039 Durio zibethinus HOM05D003225 ORTHO05D003818 7.7e-19 96.7 64 71.9
Gohir.A07G203100 Gossypium hirsutum HOM05D003225 ORTHO05D003818 7.7e-19 96.7 64 73.4
TAR365G0417 Trochodendron aralioides HOM05D003225 ORTHO05D003818 7.7e-19 96.7 74 68.9
TPR.G30862 Trifolium pratense HOM05D003225 ORTHO05D003818 1.3e-18 95.9 63 73.0
Actinidia30111 Actinidia chinensis HOM05D003225 ORTHO05D003818 1.7e-18 95.5 64 73.4
CSS0034606 Camellia sinensis var. sinensis HOM05D003225 ORTHO05D003818 2.2e-18 95.1 63 71.4
Gohir.D08G056600 Gossypium hirsutum HOM05D003225 ORTHO05D003818 2.2e-18 95.1 63 73.0
CiPaw.04G191700 Carya illinoinensis HOM05D003225 ORTHO05D003818 2.9e-18 94.7 64 75.0
Lj2C1140G2 Lonicera japonica HOM05D003225 ORTHO05D001460 2.9e-18 94.7 59 78.0
Thecc.01G246600 Theobroma cacao HOM05D003225 ORTHO05D003818 2.9e-18 94.7 64 70.3
Sc02g0004250 Simmondsia chinensis HOM05D003225 ORTHO05D003818 5.0e-18 94.0 64 71.9
Ca_08762_v3 Cicer arietinum L. HOM05D003225 ORTHO05D009593 6.5e-18 93.6 63 71.4
Ca_30216_v3 Cicer arietinum L. HOM05D003225 ORTHO05D003818 6.5e-18 93.6 63 71.4
Manes.12G039500 Manihot esculenta HOM05D003225 ORTHO05D003818 6.5e-18 93.6 62 79.0
Prupe.8G212100 Prunus persica HOM05D003225 ORTHO05D003818 6.5e-18 93.6 64 71.9
Gohir.D07G209300 Gossypium hirsutum HOM05D003225 ORTHO05D003818 8.5e-18 93.2 64 73.4
TWI12G1380 Tripterygium wilfordii HOM05D003225 ORTHO05D003818 1.1e-17 92.8 61 73.8
Sed0003992 Sechium edule HOM05D003225 ORTHO05D003818 1.4e-17 92.4 65 70.8
Rhsim01G0259300 Rhododendron simsii HOM05D003225 ORTHO05D003818 1.9e-17 92.0 58 75.9
VMungo1383G3625 Vigna mungo HOM05D003225 ORTHO05D003818 1.9e-17 92.0 62 71.0
GSVIVG01028465001 Vitis vinifera HOM05D003225 ORTHO05D003818 1.9e-17 92.0 63 73.0
ECA247G2482 Erigeron canadensis HOM05D003225 ORTHO05D003818 2.5e-17 91.7 64 70.3
Medtr7g099280 Medicago truncatula HOM05D003225 ORTHO05D003818 2.5e-17 91.7 63 73.0
Lsat_1_v5_gn_5_180041 Lactuca sativa HOM05D003225 ORTHO05D003818 4.2e-17 90.9 62 69.4
Lj1g0002088 Lotus japonicus HOM05D003225 ORTHO05D003818 4.2e-17 90.9 63 69.8
PSO764G0139 Papaver somniferum HOM05D003225 ORTHO05D003818 4.2e-17 90.9 64 67.2
PGR044G1760 Punica granatum HOM05D003225 ORTHO05D003818 4.2e-17 90.9 64 70.3
ClCG07G001530 Citrullus lanatus HOM05D003225 ORTHO05D003818 5.5e-17 90.5 61 72.1
Gorai.001G236300 Gossypium raimondii HOM05D003225 ORTHO05D003818 5.5e-17 90.5 64 71.9
Psat4g116800 Pisum sativum HOM05D003225 ORTHO05D003818 5.5e-17 90.5 63 68.3
PSO832G0562 Papaver somniferum HOM05D003225 ORTHO05D003818 7.2e-17 90.1 64 70.3
Potri.002G254500 Populus trichocarpa HOM05D003225 ORTHO05D003818 7.2e-17 90.1 64 73.4
CsaV3_3G028560 Cucumis sativus L. HOM05D003225 ORTHO05D003818 9.4e-17 89.7 64 70.3
MD05G1185300 Malus domestica HOM05D003225 ORTHO05D003818 9.4e-17 89.7 64 70.3
Phvul.001G167800 Phaseolus vulgaris HOM05D003225 ORTHO05D003818 9.4e-17 89.7 64 70.3
VMungo1383G0903 Vigna mungo HOM05D003225 ORTHO05D003818 9.4e-17 89.7 64 70.3
ECA248G2748 Erigeron canadensis HOM05D003225 ORTHO05D003818 1.2e-16 89.4 59 71.2
Migut.N02238 Erythranthe guttata HOM05D003225 ORTHO05D003818 1.2e-16 89.4 64 68.8
Cfa002504 Carpinus fangiana HOM05D003225 ORTHO05D003818 1.6e-16 89.0 65 73.8
Lalb_Chr25g0289811 Lupinus albus HOM05D003225 ORTHO05D003818 1.6e-16 89.0 63 68.3
THA.LOC104804033 Tarenaya hassleriana HOM05D003225 ORTHO05D003818 1.6e-16 89.0 64 65.6
Cc01_g17560 Coffea canephora HOM05D003225 ORTHO05D003818 2.1e-16 88.6 62 66.1
MD10G1173500 Malus domestica HOM05D003225 ORTHO05D003818 2.1e-16 88.6 64 68.8
Haze_24728 Corylus avellana HOM05D003225 ORTHO05D003818 2.7e-16 88.2 60 78.3
FAN24G0301 Fragaria x ananassa HOM05D003225 ORTHO05D003818 2.7e-16 88.2 62 69.4
Cpa.g.sc87.66 Carica papaya HOM05D003225 ORTHO05D003818 3.6e-16 87.8 64 65.6
Ca_09633_v3 Cicer arietinum L. HOM05D003225 ORTHO05D003818 3.6e-16 87.8 64 65.6
MD10G1173200 Malus domestica HOM05D003225 ORTHO05D003818 3.6e-16 87.8 59 72.9
MELO3C012819.2 Cucumis melo HOM05D003225 ORTHO05D003818 4.7e-16 87.4 65 66.2
FvH4_2g20180 Fragaria vesca HOM05D003225 ORTHO05D003818 4.7e-16 87.4 65 66.2
FAN15G1218 Fragaria x ananassa HOM05D003225 ORTHO05D003818 4.7e-16 87.4 62 69.4
vmacro14785 Vaccinium macrocarpon HOM05D003225 ORTHO05D003818 6.1e-16 87.0 58 74.1
arahy.Tifrunner.gnm1.ann1.ZCX39R Arachis hypogaea HOM05D003225 ORTHO05D003818 8.0e-16 86.7 63 69.8
Nitab4.5_0001381g0020 Nicotiana tabacum HOM05D003225 ORTHO05D003818 8.0e-16 86.7 62 66.1
HanXRQChr01g0014831 Helianthus annuus HOM05D003225 ORTHO05D003818 1.0e-15 86.3 62 71.0
Lalb_Chr02g0152871 Lupinus albus HOM05D003225 ORTHO05D003818 1.0e-15 86.3 59 71.2
PSO063G6030 Papaver somniferum HOM05D003225 ORTHO05D003818 1.0e-15 86.3 64 67.2
Psat6g063880 Pisum sativum HOM05D003225 ORTHO05D003818 1.0e-15 86.3 64 64.1
Ah.08g213770 Amaranthus hybridus HOM05D003225 ORTHO05D003818 1.4e-15 85.9 59 66.1
CDE05G2850 Ceratophyllum demersum HOM05D003225 ORTHO05D003818 1.4e-15 85.9 63 63.5
Glyma.10G041500 Glycine max HOM05D003225 ORTHO05D003818 1.4e-15 85.9 64 67.2
Os08g0566400 Oryza sativa ssp. japonica HOM05D003225 ORTHO05D003818 1.4e-15 85.9 64 67.2
TPR.G26517 Trifolium pratense HOM05D003225 ORTHO05D003818 1.4e-15 85.9 64 60.9
Migut.D00492 Erythranthe guttata HOM05D003225 ORTHO05D003818 1.8e-15 85.5 64 65.6
Nitab4.5_0000392g0040 Nicotiana tabacum HOM05D003225 ORTHO05D003818 1.8e-15 85.5 67 64.2
Sc17g0002250 Simmondsia chinensis HOM05D003225 ORTHO05D003818 1.8e-15 85.5 59 71.2
Solyc08g078370.4 Solanum lycopersicum HOM05D003225 ORTHO05D003818 1.8e-15 85.5 64 67.2
Sopen08g026860 Solanum pennellii HOM05D003225 ORTHO05D003818 1.8e-15 85.5 64 67.2
THA.LOC104826056 Tarenaya hassleriana HOM05D003225 ORTHO05D003818 1.8e-15 85.5 65 63.1
Medtr1g069320 Medicago truncatula HOM05D003225 ORTHO05D003818 2.3e-15 85.1 64 62.5
SGA_v2.0_scaffold32G13038 Striga asiatica HOM05D003225 ORTHO05D003818 2.3e-15 85.1 62 67.7
arahy.Tifrunner.gnm1.ann1.C1DUQD Arachis hypogaea HOM05D003225 ORTHO05D003818 3.0e-15 84.7 64 62.5
Peaxi162Scf00043g01711 Petunia axillaris HOM05D003225 ORTHO05D003818 3.0e-15 84.7 59 71.2
RcHm_v2.0_Chr6g0285941 Rosa chinensis HOM05D003225 ORTHO05D003818 3.0e-15 84.7 65 64.6
Medtr7g099270 Medicago truncatula HOM05D003225 ORTHO05D003818 3.9e-15 84.3 64 65.6
Nitab4.5_0003050g0010 Nicotiana tabacum HOM05D003225 ORTHO05D003818 3.9e-15 84.3 59 67.8
Hund05507 Selenicereus undatus HOM05D003225 ORTHO05D003818 3.9e-15 84.3 59 61.0
AUR62025409 Chenopodium quinoa HOM05D003225 ORTHO05D003818 5.2e-15 84.0 59 67.8
arahy.Tifrunner.gnm1.ann1.5ZSF1B Arachis hypogaea HOM05D003225 ORTHO05D003818 6.7e-15 83.6 59 67.8
Medtr1g069325 Medicago truncatula HOM05D003225 ORTHO05D003818 8.8e-15 83.2 63 63.5
Nitab4.5_0000385g0120 Nicotiana tabacum HOM05D003225 ORTHO05D003818 8.8e-15 83.2 67 64.2
TPR.G30860 Trifolium pratense HOM05D003225 ORTHO05D003818 8.8e-15 83.2 65 67.7
AUR62008832 Chenopodium quinoa HOM05D003225 ORTHO05D003818 1.1e-14 82.8 59 66.1
Lsat_1_v5_gn_9_11840 Lactuca sativa HOM05D003225 ORTHO05D003818 1.1e-14 82.8 63 65.1
HPP92_025819 Vanilla planifolia HOM05D003225 ORTHO05D003818 1.1e-14 82.8 58 69.0
arahy.Tifrunner.gnm1.ann1.B239PN Arachis hypogaea HOM05D003225 ORTHO05D003818 1.5e-14 82.4 59 67.8
A06p47620 Brassica napus HOM05D003225 ORTHO05D003818 1.5e-14 82.4 63 63.5
Thhalv10025355m.g Eutrema salsugineum HOM05D003225 ORTHO05D003818 1.5e-14 82.4 64 62.5
Glyma.10G041400 Glycine max HOM05D003225 ORTHO05D003818 1.5e-14 82.4 59 64.4
PGR083G1634 Punica granatum HOM05D003225 ORTHO05D003818 1.5e-14 82.4 60 66.7
CANSAT01G1040 Cannabis sativa HOM05D003225 ORTHO05D003818 2.6e-14 81.6 65 63.1
Lj5g0003408 Lotus japonicus HOM05D003225 ORTHO05D003818 2.6e-14 81.6 64 67.2
BcaNung04702 Brassica carinata HOM05D000200 ORTHO05D003818 3.3e-14 81.3 64 60.9
HanXRQChr10g0280301 Helianthus annuus HOM05D003225 ORTHO05D003818 3.3e-14 81.3 65 63.1
A01p09230 Brassica napus HOM05D000200 ORTHO05D000262 4.4e-14 80.9 64 59.4
C01p10810 Brassica napus HOM05D000200 ORTHO05D000262 5.7e-14 80.5 62 59.7
BolC1t01042H Brassica oleracea HOM05D000200 ORTHO05D000262 5.7e-14 80.5 62 59.7
Glyma.03G169300 Glycine max HOM05D003225 ORTHO05D003818 5.7e-14 80.5 64 62.5
Lj5g0007325 Lotus japonicus HOM05D003225 ORTHO05D003818 5.7e-14 80.5 58 67.2
BcaNung01374 Brassica carinata HOM05D000200 ORTHO05D000262 7.4e-14 80.1 64 59.4
BraA01t00866Z Brassica rapa HOM05D000200 ORTHO05D000262 7.4e-14 80.1 62 59.7
CANSAT01G2940 Cannabis sativa HOM05D003225 ORTHO05D003818 7.4e-14 80.1 65 61.5
Lalb_Chr06g0170821 Lupinus albus HOM05D003225 ORTHO05D003818 7.4e-14 80.1 64 62.5
Lalb_Chr06g0170851 Lupinus albus HOM05D003225 ORTHO05D003818 7.4e-14 80.1 64 62.5
Psat3g051960 Pisum sativum HOM05D003225 ORTHO05D003818 7.4e-14 80.1 65 66.2
PGR083G0944 Punica granatum HOM05D003225 ORTHO05D003818 7.4e-14 80.1 64 65.6
Sp7g26690 Schrenkiella parvula HOM05D003225 ORTHO05D003818 7.4e-14 80.1 64 57.8
BcaC06g34611 Brassica carinata HOM05D000200 ORTHO05D000262 9.7e-14 79.7 63 61.9
C07p26480 Brassica napus HOM05D003225 ORTHO05D003818 9.7e-14 79.7 63 61.9
BolC7t43177H Brassica oleracea HOM05D003225 ORTHO05D003818 9.7e-14 79.7 63 61.9
Phvul.007G154800 Phaseolus vulgaris HOM05D003225 ORTHO05D003818 9.7e-14 79.7 64 62.5
arahy.Tifrunner.gnm1.ann1.E3U1P5 Arachis hypogaea HOM05D003225 ORTHO05D003818 1.3e-13 79.3 64 59.4
Nitab4.5_0001590g0020 Nicotiana tabacum HOM05D003225 ORTHO05D003818 1.3e-13 79.3 59 62.7
AL8G16220 Arabidopsis lyrata HOM05D003225 ORTHO05D003818 1.7e-13 79.0 65 64.6
Carub.0008s0468 Capsella rubella HOM05D003225 ORTHO05D003818 1.7e-13 79.0 65 64.6
Lalb_Chr02g0152831 Lupinus albus HOM05D003225 ORTHO05D003818 1.7e-13 79.0 63 60.3
PGR083G1209 Punica granatum HOM05D003225 ORTHO05D003818 1.7e-13 79.0 64 64.1
PGSC0003DMG400009744 Solanum tuberosum HOM05D003225 ORTHO05D003818 1.7e-13 79.0 63 63.5
Peaxi162Scf00214g00026 Petunia axillaris HOM05D003225 ORTHO05D003818 2.2e-13 78.6 62 61.3
Peaxi162Scf01083g00112 Petunia axillaris HOM05D003225 ORTHO05D003818 2.2e-13 78.6 59 64.4
Psat6g063920 Pisum sativum HOM05D003225 ORTHO05D003818 2.2e-13 78.6 62 59.7
Zm00001eb034820 Zea mays HOM05D003225 ORTHO05D003818 2.2e-13 78.6 64 64.1
VMungo0720G1232 Vigna mungo HOM05D003225 ORTHO05D003818 2.8e-13 78.2 64 64.1
arahy.Tifrunner.gnm1.ann1.UB37AI Arachis hypogaea HOM05D003225 ORTHO05D003818 3.7e-13 77.8 58 63.8
Aa31LG5G3370 Aethionema arabicum HOM05D003225 ORTHO05D003818 4.8e-13 77.4 62 59.7
BraA06t27630Z Brassica rapa HOM05D003225 ORTHO05D003818 4.8e-13 77.4 64 62.5
CARHR179520 Cardamine hirsuta HOM05D003225 ORTHO05D003818 4.8e-13 77.4 61 63.9
PGR083G1413 Punica granatum HOM05D003225 ORTHO05D003818 4.8e-13 77.4 64 65.6
ATR0088G044 Amborella trichopoda HOM05D003225 ORTHO05D003818 6.3e-13 77.0 63 61.9
arahy.Tifrunner.gnm1.ann1.D8W1EX Arachis hypogaea HOM05D003225 ORTHO05D003818 6.3e-13 77.0 62 59.7
AT5G43910 Arabidopsis thaliana HOM05D003225 ORTHO05D003818 1.1e-12 76.3 65 63.1
Glyma.13G128300 Glycine max HOM05D003225 ORTHO05D003818 1.4e-12 75.9 59 62.7
CAN.G1178.13 Capsicum annuum HOM05D003225 ORTHO05D003818 1.8e-12 75.5 59 62.7
Aa31LG2G21670 Aethionema arabicum HOM05D003225 ORTHO05D003818 2.4e-12 75.1 62 53.2
AL7G23810 Arabidopsis lyrata HOM05D003225 ORTHO05D003818 2.4e-12 75.1 65 60.0
arahy.Tifrunner.gnm1.ann1.5QC4GP Arachis hypogaea HOM05D003225 ORTHO05D003818 2.4e-12 75.1 58 63.8
Eucgr.H00836 Eucalyptus grandis HOM05D003225 ORTHO05D003818 2.4e-12 75.1 64 56.2
Sopen09g025450 Solanum pennellii HOM05D003225 ORTHO05D003818 2.4e-12 75.1 63 60.3
VMungo0720G1759 Vigna mungo HOM05D003225 ORTHO05D003818 2.4e-12 75.1 59 64.4
Solyc09g064240.3 Solanum lycopersicum HOM05D003225 ORTHO05D003818 3.1e-12 74.7 63 60.3
Carub.0007s1194 Capsella rubella HOM05D003225 ORTHO05D003818 4.1e-12 74.3 65 61.5
Eucgr.K03579 Eucalyptus grandis HOM05D003225 ORTHO05D003818 4.1e-12 74.3 64 54.7
Nitab4.5_0007181g0010 Nicotiana tabacum HOM05D003225 ORTHO05D003818 4.1e-12 74.3 62 58.1
DCAR_004696 Daucus carota HOM05D003225 ORTHO05D003818 7.0e-12 73.6 76 50.0
SEGI_31401 Sequoiadendron giganteum HOM05D003225 ORTHO05D003818 7.0e-12 73.6 63 57.1
Hund18330 Selenicereus undatus HOM05D003225 ORTHO05D003818 9.1e-12 73.2 69 53.6
Phvul.007G154700 Phaseolus vulgaris HOM05D003225 ORTHO05D003818 1.2e-11 72.8 59 61.0
CARHR236490 Cardamine hirsuta HOM05D003225 ORTHO05D003818 1.6e-11 72.4 65 60.0
PGR083G1329 Punica granatum HOM05D003225 ORTHO05D003818 1.6e-11 72.4 64 62.5
Ah.15g091560 Amaranthus hybridus HOM05D003225 ORTHO05D003818 2.0e-11 72.0 59 64.4
Thhalv10003370m.g Eutrema salsugineum HOM05D003225 ORTHO05D003818 2.0e-11 72.0 64 59.4
Eucgr.H00844 Eucalyptus grandis HOM05D003225 ORTHO05D003818 2.6e-11 71.6 65 56.9
Eucgr.L01052 Eucalyptus grandis HOM05D003225 ORTHO05D003818 2.6e-11 71.6 60 63.3
PGR083G2794 Punica granatum HOM05D003225 ORTHO05D003818 2.6e-11 71.6 64 62.5
BcaC06g31670 Brassica carinata HOM05D003225 ORTHO05D003818 3.5e-11 71.2 64 57.8
Hund05508 Selenicereus undatus HOM05D003225 ORTHO05D003818 5.9e-11 70.5 53 67.9
AT4G28706 Arabidopsis thaliana HOM05D003225 ORTHO05D003818 1.0e-10 69.7 64 57.8
AUR62008831 Chenopodium quinoa HOM05D003225 ORTHO05D003818 2.9e-10 68.2 59 57.6
arahy.Tifrunner.gnm1.ann1.P4ZHWF Arachis hypogaea HOM05D003225 ORTHO05D003818 3.8e-10 67.8 66 56.1
Pp3c16_16280 Physcomitrium patens HOM05D003225 ORTHO05D003818 3.8e-10 67.8 67 49.3
Glyma.08G305500 Glycine max HOM05D001236 ORTHO05D001090 1.1e-09 66.2 48 60.4
AagrBONN_evm.TU.Sc2ySwM_344.4900 Anthoceros agrestis HOM05D003225 ORTHO05D003818 1.9e-09 65.5 63 47.6
Eucgr.H00838 Eucalyptus grandis HOM05D003225 ORTHO05D003818 2.5e-09 65.1 65 56.9
Eucgr.L03567 Eucalyptus grandis HOM05D003225 ORTHO05D003818 1.6e-08 62.4 45 71.1
Mapoly0004s0194 Marchantia polymorpha HOM05D003225 ORTHO05D003818 2.7e-08 61.6 63 47.6
PGSC0003DMG401025696 Solanum tuberosum HOM05D003225 ORTHO05D003818 6.1e-08 60.5 51 54.9
SEGI_37964 Sequoiadendron giganteum HOM05D003225 ORTHO05D003818 1.5e-06 55.8 47 53.2
CBR_g19222 Chara braunii HOM05D003225 ORTHO05D003818 2.6e-06 55.1 71 36.6


User provided reference genes

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