Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g03057 Nelumbo nucifera HOM05D007623 ORTHO05D009641 2.0e-189 666.0 330 100.0
Aqoxy1G01216 Aquilegia oxysepala HOM05D007623 ORTHO05D009641 3.7e-82 309.7 286 55.6
Dinv34009 Davidia involucrata HOM05D007623 ORTHO05D009641 2.7e-80 303.5 326 53.1
GSVIVG01010112001 Vitis vinifera HOM05D007623 ORTHO05D009641 3.9e-79 299.7 324 51.9
CiPaw.06G095500 Carya illinoinensis HOM05D007623 ORTHO05D009641 8.0e-77 292.0 330 47.6
Lj6A773T130 Lonicera japonica HOM05D007623 ORTHO05D009641 5.8e-75 285.8 330 48.5
FAN17G1802 Fragaria x ananassa HOM05D007623 ORTHO05D009641 1.3e-74 284.6 329 47.1
Cfa008839 Carpinus fangiana HOM05D007623 ORTHO05D009641 2.2e-74 283.9 305 49.5
Haze_11851 Corylus avellana HOM05D007623 ORTHO05D009641 3.7e-74 283.1 330 47.3
COL.COLO4_27779 Corchorus olitorius HOM05D007623 ORTHO05D009641 4.9e-74 282.7 297 51.5
FvH4_4g29120 Fragaria vesca HOM05D007623 ORTHO05D009641 6.4e-74 282.3 326 47.5
FAN12G1349 Fragaria x ananassa HOM05D007623 ORTHO05D009641 1.9e-73 280.8 324 47.5
Thecc.02G321100 Theobroma cacao HOM05D007623 ORTHO05D009641 2.4e-73 280.4 324 47.5
FAN22G0497 Fragaria x ananassa HOM05D007623 ORTHO05D009641 3.5e-72 276.6 326 46.3
MD16G1054700 Malus domestica HOM05D007623 ORTHO05D009641 1.3e-71 274.6 319 47.0
Manes.14G091100 Manihot esculenta HOM05D007623 ORTHO05D009641 1.3e-71 274.6 326 47.2
Gohir.A03G106900 Gossypium hirsutum HOM05D007623 ORTHO05D009641 1.7e-71 274.2 265 54.0
Gorai.005G147900 Gossypium raimondii HOM05D007623 ORTHO05D009641 1.7e-71 274.2 265 54.3
Actinidia24041 Actinidia chinensis HOM05D007623 ORTHO05D009641 8.6e-71 271.9 329 49.8
Prupe.2G062100 Prunus persica HOM05D007623 ORTHO05D009641 2.5e-70 270.4 328 45.4
CANSAT64G0130 Cannabis sativa HOM05D007623 ORTHO05D009641 4.3e-70 269.6 327 46.8
RcHm_v2.0_Chr4g0437181 Rosa chinensis HOM05D007623 ORTHO05D009641 9.5e-70 268.5 331 45.6
Actinidia31923 Actinidia chinensis HOM05D007623 ORTHO05D009641 1.8e-68 264.2 328 47.9
ClCG05G023480 Citrullus lanatus HOM05D007623 ORTHO05D009641 5.2e-68 262.7 299 46.2
Sed0026487 Sechium edule HOM05D007623 ORTHO05D009641 3.4e-67 260.0 331 44.1
MELO3C026661.2 Cucumis melo HOM05D007623 ORTHO05D009641 4.4e-67 259.6 267 47.9
Hund25149 Selenicereus undatus HOM05D007623 ORTHO05D009641 1.3e-66 258.1 330 45.8
Sabra10G0105800 Salix brachista HOM05D007623 ORTHO05D009641 8.3e-66 255.4 327 44.3
Atru.chr11.1545 Acer truncatum HOM05D007623 ORTHO05D009641 1.1e-65 255.0 329 44.7
Lsat_1_v5_gn_6_31920 Lactuca sativa HOM05D007623 ORTHO05D009641 4.1e-65 253.1 304 45.4
CsaV3_3G030580 Cucumis sativus L. HOM05D007623 ORTHO05D009641 2.1e-64 250.8 300 44.0
CSS0048304 Camellia sinensis var. sinensis HOM05D007623 ORTHO05D009641 2.7e-64 250.4 328 45.4
vmacro01293 Vaccinium macrocarpon HOM05D000001 ORTHO05D000003 1.9e-62 244.2 325 43.1
HanXRQChr08g0215011 Helianthus annuus HOM05D007623 ORTHO05D009641 7.3e-62 242.3 244 50.0
CSS0034887 Camellia sinensis var. sinensis HOM05D007623 ORTHO05D009641 1.2e-61 241.5 326 44.2
ECA233G1899 Erigeron canadensis HOM05D000630 ORTHO05D001413 1.5e-59 234.6 237 50.6
AL1G25410 Arabidopsis lyrata HOM05D007623 ORTHO05D009641 1.3e-58 231.5 310 42.3
SHI04831 Sapria himalayana HOM05D007623 ORTHO05D009641 2.9e-58 230.3 299 42.1
DCAR_023738 Daucus carota HOM05D007623 ORTHO05D009641 3.8e-58 229.9 271 46.9
Prupe.7G020300 Prunus persica HOM05D007623 ORTHO05D009641 4.2e-57 226.5 214 55.1
EL10Ac6g14659 Beta vulgaris HOM05D007623 ORTHO05D009641 2.1e-56 224.2 242 49.2
Aa31LG7G1940 Aethionema arabicum HOM05D007623 ORTHO05D009641 2.7e-56 223.8 268 42.5
Sopen00g002400 Solanum pennellii HOM05D007623 ORTHO05D009641 2.5e-54 217.2 240 45.8
Rhsim12G0070700 Rhododendron simsii HOM05D007623 ORTHO05D009641 9.6e-54 215.3 291 44.0
PGSC0003DMG400019642 Solanum tuberosum HOM05D007623 ORTHO05D009641 1.1e-52 211.8 236 46.2
Thhalv10009738m.g Eutrema salsugineum HOM05D007623 ORTHO05D009641 2.0e-51 207.6 320 38.1
AUR62007860 Chenopodium quinoa HOM05D007623 ORTHO05D009641 1.7e-50 204.5 236 46.6
Sp1g12290 Schrenkiella parvula HOM05D007623 ORTHO05D009641 9.3e-49 198.7 273 39.2
AUR62003048 Chenopodium quinoa HOM05D007623 ORTHO05D009641 3.5e-48 196.8 236 44.5
BcaC05g25269 Brassica carinata HOM05D007623 ORTHO05D009641 7.8e-48 195.7 231 45.0
BcaB02g06459 Brassica carinata HOM05D007623 ORTHO05D009641 1.3e-47 194.9 278 39.2
THA.LOC104805220 Tarenaya hassleriana HOM05D007623 ORTHO05D009641 1.1e-46 191.8 292 38.7
Sc11g0002680 Simmondsia chinensis HOM05D007623 ORTHO05D009641 2.1e-45 187.6 175 54.3
Carub.0001s1335 Capsella rubella HOM05D007623 ORTHO05D009641 2.8e-45 187.2 299 36.5
Oeu019601.2 Olea europaea HOM05D007623 ORTHO05D009641 8.1e-45 185.7 207 47.8
TAR374G0443 Trochodendron aralioides HOM05D007623 ORTHO05D009641 1.8e-44 184.5 132 68.2
Cc11_g11460 Coffea canephora HOM05D007623 ORTHO05D009641 6.9e-44 182.6 215 48.8
A06p09730 Brassica napus HOM05D007623 ORTHO05D009641 1.2e-43 181.8 282 36.9
BraA06t24162Z Brassica rapa HOM05D007623 ORTHO05D009641 1.2e-43 181.8 282 36.9
Ah.03g137460 Amaranthus hybridus HOM05D007623 ORTHO05D009641 1.7e-42 177.9 246 40.2
C05p11430 Brassica napus HOM05D007623 ORTHO05D009641 2.2e-42 177.6 278 38.5
BolC5t29896H Brassica oleracea HOM05D007623 ORTHO05D009641 2.4e-41 174.1 230 41.3
Migut.E00256 Erythranthe guttata HOM05D007623 ORTHO05D009641 6.0e-40 169.5 271 39.1
MD13G1055600 Malus domestica HOM05D007623 ORTHO05D009641 3.3e-38 163.7 192 45.8
SGA_v2.0_scaffold287G47196 Striga asiatica HOM05D007623 ORTHO05D009641 9.6e-38 162.2 260 37.3
TAR374G1445 Trochodendron aralioides HOM05D007623 ORTHO05D009641 3.1e-36 157.1 163 55.2
HPP92_001379 Vanilla planifolia HOM05D007623 ORTHO05D009641 1.3e-34 151.8 217 40.1
ATR0048G027 Amborella trichopoda HOM05D007623 ORTHO05D009641 1.1e-33 148.7 156 50.0
Ciclev10031004m.g Citrus clementina HOM05D007623 ORTHO05D009641 9.3e-33 145.6 130 53.1
Gohir.D02G132000 Gossypium hirsutum HOM05D007623 ORTHO05D009641 2.3e-31 141.0 133 53.4
Zm00001eb045730 Zea mays HOM05D007623 ORTHO05D009641 1.5e-30 138.3 170 40.6
Peaxi162Scf00188g01015 Petunia axillaris HOM05D007623 ORTHO05D009641 9.6e-30 135.6 128 51.6
Lsat_1_v5_gn_3_22320 Lactuca sativa HOM05D007623 ORTHO05D009641 2.8e-29 134.0 142 49.3
Nitab4.5_0000259g0170 Nicotiana tabacum HOM05D007623 ORTHO05D009641 2.0e-27 127.9 131 49.6
Nitab4.5_0011373g0020 Nicotiana tabacum HOM05D007623 ORTHO05D009641 3.4e-27 127.1 130 49.2
CARHR013990 Cardamine hirsuta HOM05D007623 ORTHO05D009641 8.7e-23 112.5 121 45.5
AT1G13630 Arabidopsis thaliana HOM05D007623 ORTHO05D009641 9.7e-22 109.0 137 45.3
SEGI_39043 Sequoiadendron giganteum HOM05D007623 ORTHO05D009641 9.7e-22 109.0 192 35.9
BcaB08g34697 Brassica carinata HOM05D007623 ORTHO05D009641 2.2e-21 107.8 136 43.4
Cpa.g.c32845 Carica papaya HOM05D007623 ORTHO05D009641 1.2e-19 102.1 159 39.6
CAN.G680.12 Capsicum annuum HOM05D007623 ORTHO05D009641 3.4e-19 100.5 100 51.0
BcaB06g28282 Brassica carinata HOM05D007623 ORTHO05D009641 2.7e-16 90.9 133 39.1
SEGI_00853 Sequoiadendron giganteum HOM05D006931 ORTHO05D008782 5.1e-15 86.7 198 28.8
Lalb_Chr02g0154661 Lupinus albus HOM05D007291 ORTHO05D009038 8.8e-15 85.9 243 25.9
Hma1.2p1_0524F.1_g172380 Hydrangea macrophylla HOM05D007291 ORTHO05D009038 2.5e-14 84.3 230 28.3
Hma1.2p1_1840F.1_g304950 Hydrangea macrophylla HOM05D007291 ORTHO05D009038 3.3e-14 84.0 230 28.3
Nn1g03517 Nelumbo nucifera HOM05D002890 ORTHO05D009847 5.7e-14 83.2 233 24.5
A02p13610 Brassica napus HOM05D007291 ORTHO05D009038 2.2e-13 81.3 288 26.4
BraA02t06420Z Brassica rapa HOM05D007291 ORTHO05D009038 2.2e-13 81.3 288 26.4
Thhalv10018418m.g Eutrema salsugineum HOM05D007291 ORTHO05D009038 2.2e-13 81.3 261 28.7
Haze_23220 Corylus avellana HOM05D007455 ORTHO05D009431 1.4e-12 78.6 209 28.7
CARHR014000 Cardamine hirsuta HOM05D007623 ORTHO05D009641 1.8e-12 78.2 161 31.7
C02p21950 Brassica napus HOM05D007291 ORTHO05D009038 4.1e-12 77.0 284 26.4
BolC2t08326H Brassica oleracea HOM05D007291 ORTHO05D009038 4.1e-12 77.0 284 26.4
MELO3C035731.2 Cucumis melo HOM05D002890 ORTHO05D009847 6.9e-12 76.3 218 25.2
Aqoxy1G00452 Aquilegia oxysepala HOM05D007455 ORTHO05D009431 1.5e-11 75.1 185 26.5
THA.LOC104805618 Tarenaya hassleriana HOM05D007291 ORTHO05D009038 1.5e-11 75.1 186 29.6
BcaB01g06086 Brassica carinata HOM05D007455 ORTHO05D009431 2.0e-11 74.7 235 28.1
BcaC03g14744 Brassica carinata HOM05D007291 ORTHO05D009038 2.0e-11 74.7 284 26.1
CSS0009024 Camellia sinensis var. sinensis HOM05D007956 ORTHO05D009038 3.4e-11 73.9 213 25.8
MD07G1079700 Malus domestica HOM05D007455 ORTHO05D009431 3.4e-11 73.9 221 28.1
QL04p014212 Quercus lobata HOM05D007455 ORTHO05D009431 5.9e-11 73.2 262 26.0
C03p00670 Brassica napus HOM05D007455 ORTHO05D009431 7.7e-11 72.8 237 27.4
BolC3t12630H Brassica oleracea HOM05D007455 ORTHO05D009431 7.7e-11 72.8 237 27.4
Cfa009846 Carpinus fangiana HOM05D007455 ORTHO05D009431 7.7e-11 72.8 202 27.2
HanXRQChr14g0444491 Helianthus annuus HOM05D007291 ORTHO05D009038 1.0e-10 72.4 264 22.3
Prupe.4G237400 Prunus persica HOM05D007291 ORTHO05D009038 1.7e-10 71.6 188 30.3
Sp5g21370 Schrenkiella parvula HOM05D007291 ORTHO05D009038 2.2e-10 71.2 213 29.1
MSTRG.1303 Avicennia marina HOM05D007639 ORTHO05D009509 5.0e-10 70.1 233 25.3
TAR624G0355 Trochodendron aralioides HOM05D002890 ORTHO05D009847 8.5e-10 69.3 197 26.4
ClCG01G008820 Citrullus lanatus HOM05D007291 ORTHO05D009038 1.4e-09 68.6 194 28.9
SalBow7G4426 Salvia bowleyana HOM05D007639 ORTHO05D009509 3.2e-09 67.4 217 27.2
Sc16g0011110 Simmondsia chinensis HOM05D007455 ORTHO05D009431 3.2e-09 67.4 201 27.9
ATR1127G166 Amborella trichopoda HOM05D007358 ORTHO05D009117 4.2e-09 67.0 191 25.7
SEGI_34198 Sequoiadendron giganteum HOM05D007545 ORTHO05D009579 4.2e-09 67.0 204 28.9
CsaV3_5G024140 Cucumis sativus L. HOM05D007291 ORTHO05D009038 5.5e-09 66.6 194 28.4
Carub.0002s1237 Capsella rubella HOM05D007291 ORTHO05D009038 7.2e-09 66.2 186 30.1
CiPaw.01G118600 Carya illinoinensis HOM05D007291 ORTHO05D009038 7.2e-09 66.2 235 24.7
HanXRQChr06g0182581 Helianthus annuus HOM05D007455 ORTHO05D009431 7.2e-09 66.2 153 30.1
Haze_11634 Corylus avellana HOM05D007291 ORTHO05D009038 9.4e-09 65.9 168 29.2
Dinv28212 Davidia involucrata HOM05D007291 ORTHO05D009038 9.4e-09 65.9 169 27.8
Thecc.07G187000 Theobroma cacao HOM05D007291 ORTHO05D009038 9.4e-09 65.9 176 27.8
Duzib147G0761 Durio zibethinus HOM05D006556 ORTHO05D008146 1.2e-08 65.5 207 30.0
Prupe.2G102900 Prunus persica HOM05D007455 ORTHO05D009431 1.6e-08 65.1 189 29.1
CiPaw.13G151600 Carya illinoinensis HOM05D007455 ORTHO05D009431 2.1e-08 64.7 264 26.1
Gorai.012G187700 Gossypium raimondii HOM05D006556 ORTHO05D008146 2.1e-08 64.7 207 30.4
Gohir.D04G192300 Gossypium hirsutum HOM05D006556 ORTHO05D008146 2.7e-08 64.3 207 30.4
SEGI_33508 Sequoiadendron giganteum HOM05D006858 ORTHO05D008767 2.7e-08 64.3 174 26.4
BcaB05g24168 Brassica carinata HOM05D007291 ORTHO05D009038 3.6e-08 63.9 220 27.3
Lsat_1_v5_gn_9_106260 Lactuca sativa HOM05D007455 ORTHO05D009431 4.7e-08 63.5 171 27.5
SalBow7G0144 Salvia bowleyana HOM05D007639 ORTHO05D009509 6.1e-08 63.2 217 26.3
Ciclev10026953m.g Citrus clementina HOM05D006556 ORTHO05D008146 1.8e-07 61.6 229 28.8
QL02p057926 Quercus lobata HOM05D007291 ORTHO05D009038 1.8e-07 61.6 168 28.0
QL93p0100_0337 Quercus lobata HOM05D007291 ORTHO05D009038 1.8e-07 61.6 168 28.0
CDE02G3715 Ceratophyllum demersum HOM05D002444 ORTHO05D009235 2.3e-07 61.2 221 25.8
Gohir.A04G148000 Gossypium hirsutum HOM05D006556 ORTHO05D008146 2.3e-07 61.2 207 29.5
Solyc05g010790.3 Solanum lycopersicum HOM05D007623 ORTHO05D009641 2.3e-07 61.2 78 38.5
SEGI_16669 Sequoiadendron giganteum HOM05D006931 ORTHO05D008782 3.0e-07 60.8 183 25.1
TAR371G0226 Trochodendron aralioides HOM05D007347 ORTHO05D009296 3.0e-07 60.8 156 30.1
TAR629G3514 Trochodendron aralioides HOM05D007347 ORTHO05D009296 3.0e-07 60.8 156 30.1
Atru.chr3.118 Acer truncatum HOM05D006556 ORTHO05D008146 5.1e-07 60.1 188 27.7
Ah.10g029280 Amaranthus hybridus HOM05D007623 ORTHO05D009641 5.1e-07 60.1 104 32.7
Lsat_1_v5_gn_3_22340 Lactuca sativa HOM05D007623 ORTHO05D009641 8.8e-07 59.3 43 58.1
SHI25578 Sapria himalayana HOM05D007639 ORTHO05D009509 8.8e-07 59.3 233 24.5
Psat5g196040 Pisum sativum HOM05D006888 ORTHO05D008371 1.1e-06 58.9 208 22.6
vmacro20622 Vaccinium macrocarpon HOM05D006556 ORTHO05D008146 1.1e-06 58.9 214 27.1
Thecc.01G004300 Theobroma cacao HOM05D006556 ORTHO05D008146 2.0e-06 58.2 205 27.8
Nitab4.5_0002344g0040 Nicotiana tabacum HOM05D007570 ORTHO05D009365 2.6e-06 57.8 130 30.0
Cpa.g.sc84.2 Carica papaya HOM05D007455 ORTHO05D009431 3.3e-06 57.4 163 27.0
COL.COLO4_22559 Corchorus olitorius HOM05D006556 ORTHO05D006707 3.3e-06 57.4 205 29.3
Lalb_Chr10g0104281 Lupinus albus HOM05D007545 ORTHO05D009579 3.3e-06 57.4 212 25.9
RcHm_v2.0_Chr5g0050671 Rosa chinensis HOM05D007455 ORTHO05D009431 3.3e-06 57.4 196 25.5
PSO832G0129 Papaver somniferum HOM05D007570 ORTHO05D009365 4.4e-06 57.0 121 29.8
Sopen02g025900 Solanum pennellii HOM05D007128 ORTHO05D009059 4.4e-06 57.0 278 25.2
Lj7A473T51 Lonicera japonica HOM05D007893 ORTHO05D010042 5.7e-06 56.6 192 23.4
Sp6g40500 Schrenkiella parvula HOM05D007455 ORTHO05D009431 7.4e-06 56.2 179 26.8
GSVIVG01010647001 Vitis vinifera HOM05D000001 ORTHO05D010013 7.4e-06 56.2 139 26.6


User provided reference genes

Program Settings