Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g03041 Nelumbo nucifera HOM05D005842 ORTHO05D007077 1.6e-37 159.1 90 100.0
Nn1g03040 Nelumbo nucifera HOM05D005842 ORTHO05D007077 2.6e-35 151.8 87 90.8
Nn1g03042 Nelumbo nucifera HOM05D005842 ORTHO05D007077 1.7e-31 139.0 89 88.8
Nn1g03039 Nelumbo nucifera HOM05D005842 ORTHO05D007077 2.3e-31 138.7 89 88.8
TAR633G2520 Trochodendron aralioides HOM05D005842 ORTHO05D007077 2.2e-18 95.5 90 60.0
PSO832G1240 Papaver somniferum HOM05D005842 ORTHO05D007077 3.5e-16 88.2 89 53.9
Cc00_g17210 Coffea canephora HOM05D005842 ORTHO05D007077 1.0e-15 86.7 87 52.9
Cc03_g06880 Coffea canephora HOM05D005842 ORTHO05D007077 3.0e-15 85.1 87 52.9
Cc03_g06890 Coffea canephora HOM05D005842 ORTHO05D007077 3.0e-15 85.1 87 52.9
Cc03_g06900 Coffea canephora HOM05D005842 ORTHO05D007077 3.0e-15 85.1 87 52.9
Cc03_g06910 Coffea canephora HOM05D005842 ORTHO05D007077 3.0e-15 85.1 87 52.9
Cc03_g06920 Coffea canephora HOM05D005842 ORTHO05D007077 3.0e-15 85.1 87 52.9
Cc03_g06930 Coffea canephora HOM05D005842 ORTHO05D007077 3.0e-15 85.1 87 52.9
Cc03_g06940 Coffea canephora HOM05D005842 ORTHO05D007077 3.0e-15 85.1 87 52.9
Cc03_g06950 Coffea canephora HOM05D005842 ORTHO05D007077 3.0e-15 85.1 87 52.9
Hma1.2p1_0112F.1_g055010 Hydrangea macrophylla HOM05D005842 ORTHO05D007077 3.0e-15 85.1 81 53.1
Migut.H00813 Erythranthe guttata HOM05D005842 ORTHO05D007077 3.9e-15 84.7 84 57.1
PGSC0003DMG400027164 Solanum tuberosum HOM05D005842 ORTHO05D007077 6.6e-15 84.0 83 55.4
TAR362G0228 Trochodendron aralioides HOM05D005842 ORTHO05D007077 1.5e-14 82.8 90 57.8
Dinv27137 Davidia involucrata HOM05D005842 ORTHO05D007077 2.5e-14 82.0 82 50.0
TWI09G0179 Tripterygium wilfordii HOM05D005842 ORTHO05D007077 3.3e-14 81.6 92 50.0
Migut.N00324 Erythranthe guttata HOM05D005842 ORTHO05D007077 4.3e-14 81.3 84 52.4
Glyma.10G130600 Glycine max HOM05D005842 ORTHO05D007077 4.3e-14 81.3 85 52.9
Actinidia39941 Actinidia chinensis HOM05D005842 ORTHO05D007077 5.6e-14 80.9 84 53.6
Nitab4.5_0001769g0190 Nicotiana tabacum HOM05D005842 ORTHO05D007077 5.6e-14 80.9 88 48.9
CSS0006411 Camellia sinensis var. sinensis HOM05D005842 ORTHO05D007077 9.6e-14 80.1 84 53.6
CAN.G305.25 Capsicum annuum HOM05D005842 ORTHO05D007077 1.2e-13 79.7 84 52.4
Glyma.20G081400 Glycine max HOM05D005842 ORTHO05D007077 1.2e-13 79.7 85 51.8
Atru.chr4.1859_Atru.chr4.1858 Acer truncatum HOM05D005842 ORTHO05D007077 2.1e-13 79.0 93 57.0
Atru.chr4.1868 Acer truncatum HOM05D005842 ORTHO05D007077 2.1e-13 79.0 93 57.0
Atru.chr4.1869 Acer truncatum HOM05D005842 ORTHO05D007077 2.1e-13 79.0 93 57.0
CSS0017402 Camellia sinensis var. sinensis HOM05D005842 ORTHO05D007077 2.1e-13 79.0 85 47.1
Actinidia25095 Actinidia chinensis HOM05D005842 ORTHO05D007077 2.8e-13 78.6 81 49.4
Ca_26210_v3 Cicer arietinum L. HOM05D005842 ORTHO05D007077 2.8e-13 78.6 90 46.7
Actinidia11383 Actinidia chinensis HOM05D005842 ORTHO05D007077 3.6e-13 78.2 81 50.6
MBI10_g16785_MAGBIO Magnolia biondii HOM05D005842 ORTHO05D007077 4.7e-13 77.8 93 54.8
MBI10_g16786_MAGBIO Magnolia biondii HOM05D005842 ORTHO05D007077 4.7e-13 77.8 93 54.8
Solyc09g091040.3 Solanum lycopersicum HOM05D005842 ORTHO05D007077 1.1e-12 76.6 81 53.1
PGSC0003DMG404001548 Solanum tuberosum HOM05D005842 ORTHO05D007077 1.4e-12 76.3 81 54.3
THA.LOC104821628 Tarenaya hassleriana HOM05D005842 ORTHO05D007077 1.4e-12 76.3 84 50.0
Sopen09g034020 Solanum pennellii HOM05D005842 ORTHO05D007077 2.4e-12 75.5 81 53.1
SHI18628 Sapria himalayana HOM05D005842 ORTHO05D007077 3.1e-12 75.1 87 47.1
PSO384G4311 Papaver somniferum HOM05D005842 ORTHO05D007077 6.9e-12 73.9 84 57.1
MD13G1226500 Malus domestica HOM05D005842 ORTHO05D007077 9.0e-12 73.6 87 48.3
PSO266G0009 Papaver somniferum HOM05D005842 ORTHO05D007077 1.2e-11 73.2 86 55.8
PSO266G0028 Papaver somniferum HOM05D005842 ORTHO05D007077 1.2e-11 73.2 86 55.8
Sabra10G0084400 Salix brachista HOM05D003281 ORTHO05D004128 1.5e-11 72.8 89 49.4
Lj6g0013781 Lotus japonicus HOM05D005842 ORTHO05D007077 2.0e-11 72.4 85 45.9
PSO384G5008 Papaver somniferum HOM05D005842 ORTHO05D007077 2.0e-11 72.4 86 55.8
MD16G1231600 Malus domestica HOM05D005842 ORTHO05D007077 2.6e-11 72.0 87 47.1
Potri.010G062800 Populus trichocarpa HOM05D005842 ORTHO05D007077 2.6e-11 72.0 89 48.3
Sabra10G0043900 Salix brachista HOM05D005842 ORTHO05D007077 3.4e-11 71.6 89 48.3
ATR0787G056 Amborella trichopoda HOM05D005842 ORTHO05D007077 4.4e-11 71.2 93 53.8
PSO210G3477 Papaver somniferum HOM05D005842 ORTHO05D007077 4.4e-11 71.2 89 51.7
PSO210G4408 Papaver somniferum HOM05D005842 ORTHO05D007077 4.4e-11 71.2 89 51.7
PSO764G0017 Papaver somniferum HOM05D005842 ORTHO05D007077 5.8e-11 70.9 89 51.7
Prupe.1G053900 Prunus persica HOM05D005842 ORTHO05D007077 9.9e-11 70.1 87 46.0
Lalb_Chr01g0011321 Lupinus albus HOM05D005842 ORTHO05D007077 3.8e-10 68.2 71 54.9
BcaB03g16079 Brassica carinata HOM05D005842 ORTHO05D007077 6.4e-10 67.4 106 41.5
Phvul.007G233000 Phaseolus vulgaris HOM05D005842 ORTHO05D007077 6.4e-10 67.4 85 45.9
Nitab4.5_0000867g0010 Nicotiana tabacum HOM05D000404 ORTHO05D001765 8.4e-10 67.0 80 57.5
C03p53480 Brassica napus HOM05D005842 ORTHO05D007077 1.4e-09 66.2 75 61.3
Cpa.g.sc336.6 Carica papaya HOM05D008630 ORTHO05D010727 3.2e-09 65.1 81 45.7
ClCG05G003830 Citrullus lanatus HOM05D005842 ORTHO05D007077 4.2e-09 64.7 70 51.4
Atru.chr13.2235 Acer truncatum HOM05D005842 ORTHO05D007077 5.4e-09 64.3 79 48.1
arahy.Tifrunner.gnm1.ann1.LRUD7W Arachis hypogaea HOM05D005842 ORTHO05D007077 5.4e-09 64.3 88 43.2
arahy.Tifrunner.gnm1.ann1.GMD4I9 Arachis hypogaea HOM05D005842 ORTHO05D007077 9.3e-09 63.5 88 44.3
BcaB06g26603 Brassica carinata HOM05D005842 ORTHO05D007077 9.3e-09 63.5 70 60.0
Peaxi162Scf00164g00112 Petunia axillaris HOM05D005842 ORTHO05D007077 9.3e-09 63.5 70 51.4
arahy.Tifrunner.gnm1.ann1.Q9KDDQ Arachis hypogaea HOM05D005842 ORTHO05D007077 1.2e-08 63.2 88 42.0
arahy.Tifrunner.gnm1.ann1.JU0LD9 Arachis hypogaea HOM05D005842 ORTHO05D007077 1.6e-08 62.8 88 43.2
Dinv29780 Davidia involucrata HOM05D005842 ORTHO05D007077 1.6e-08 62.8 86 43.0
BcaC06g35667 Brassica carinata HOM05D003628 ORTHO05D004253 2.1e-08 62.4 70 58.6
Dinv29781 Davidia involucrata HOM05D005842 ORTHO05D007077 2.1e-08 62.4 93 40.9
Oeu007544.1 Olea europaea HOM05D005842 ORTHO05D007077 2.1e-08 62.4 63 54.0
BcaC02g09413 Brassica carinata HOM05D005842 ORTHO05D007077 1.0e-07 60.1 106 38.7
BcaC02g09414 Brassica carinata HOM05D005842 ORTHO05D007077 1.0e-07 60.1 106 38.7
BcaC02g09415 Brassica carinata HOM05D005842 ORTHO05D007077 1.0e-07 60.1 106 38.7
Medtr1g045980 Medicago truncatula HOM05D005842 ORTHO05D007077 1.0e-07 60.1 133 31.6
Sed0006099 Sechium edule HOM05D005842 ORTHO05D007077 1.0e-07 60.1 84 41.7
TWI18G0017 Tripterygium wilfordii HOM05D008630 ORTHO05D010727 1.0e-07 60.1 82 45.1
SpUn0225_0010 Schrenkiella parvula HOM05D005842 ORTHO05D007077 2.3e-07 58.9 106 38.7
Sopen05g031940 Solanum pennellii HOM05D005842 ORTHO05D007077 3.0e-07 58.5 83 48.2
THA.LOC104818037 Tarenaya hassleriana HOM05D008630 ORTHO05D010727 3.0e-07 58.5 79 43.0
A04p08620 Brassica napus HOM05D005842 ORTHO05D007077 3.9e-07 58.2 107 39.3
BraA04t16556Z Brassica rapa HOM05D005842 ORTHO05D007077 3.9e-07 58.2 107 39.3
Solyc05g053450.3 Solanum lycopersicum HOM05D005842 ORTHO05D007077 3.9e-07 58.2 83 48.2
Peaxi162Scf01007g00004 Petunia axillaris HOM05D005842 ORTHO05D007077 5.1e-07 57.8 88 46.6
Lalb_Chr19g0128561 Lupinus albus HOM05D005842 ORTHO05D007077 8.7e-07 57.0 61 52.5
Sed0010218 Sechium edule HOM05D005842 ORTHO05D007077 8.7e-07 57.0 87 47.1
THA.LOC104810501 Tarenaya hassleriana HOM05D008630 ORTHO05D010727 8.7e-07 57.0 79 43.0
TPR.G23959 Trifolium pratense HOM05D005842 ORTHO05D007077 8.7e-07 57.0 71 46.5
Aqoxy5G00093 Aquilegia oxysepala HOM05D005842 ORTHO05D007077 2.5e-06 55.5 90 45.6
Lalb_Chr03g0036861 Lupinus albus HOM05D005842 ORTHO05D007077 2.5e-06 55.5 64 48.4
HPP92_007288 Vanilla planifolia HOM05D005842 ORTHO05D007077 2.5e-06 55.5 101 39.6
Eucgr.F02549 Eucalyptus grandis HOM05D008630 ORTHO05D010727 3.3e-06 55.1 78 37.2
CsaV3_2G012270 Cucumis sativus L. HOM05D005842 ORTHO05D007077 4.3e-06 54.7 94 36.2
SalBow2G2733 Salvia bowleyana HOM05D005842 ORTHO05D007077 5.6e-06 54.3 80 47.5
TWI53G0373 Tripterygium wilfordii HOM05D005842 ORTHO05D007077 5.6e-06 54.3 34 73.5
Cfa014832 Carpinus fangiana HOM05D005842 ORTHO05D007077 7.3e-06 53.9 109 43.1
Peaxi162Scf00125g01021 Petunia axillaris HOM05D005842 ORTHO05D007077 9.6e-06 53.5 79 51.9


User provided reference genes

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