Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g03029 Nelumbo nucifera HOM05D004244 ORTHO05D004964 6.9e-173 610.5 304 100.0
Nn3g19830 Nelumbo nucifera HOM05D004244 ORTHO05D004964 7.5e-103 377.9 312 66.7
TAR362G0565 Trochodendron aralioides HOM05D004244 ORTHO05D004964 2.3e-80 303.1 306 56.2
TAR633G1781 Trochodendron aralioides HOM05D004244 ORTHO05D004964 1.4e-77 293.9 305 55.4
MBI07_g19046_MAGBIO Magnolia biondii HOM05D004244 ORTHO05D004964 1.7e-62 243.8 302 50.0
Aqoxy5G00098 Aquilegia oxysepala HOM05D004244 ORTHO05D004964 3.9e-59 232.6 260 52.7
PSO674G0105 Papaver somniferum HOM05D004244 ORTHO05D004964 9.0e-56 221.5 293 49.1
PSO170G0851 Papaver somniferum HOM05D004244 ORTHO05D004964 1.3e-54 217.6 293 48.1
CiPaw.01G175300 Carya illinoinensis HOM05D004244 ORTHO05D004964 9.3e-53 211.5 306 45.8
GSVIVG01001856001 Vitis vinifera HOM05D004244 ORTHO05D004964 1.0e-51 208.0 280 49.3
MD16G1230800 Malus domestica HOM05D004244 ORTHO05D004964 7.4e-50 201.8 290 43.8
FAN12G2846 Fragaria x ananassa HOM05D004244 ORTHO05D004964 1.3e-49 201.1 295 44.1
Prupe.1G052600 Prunus persica HOM05D004244 ORTHO05D004964 1.6e-49 200.7 291 43.6
FvH4_4g05190 Fragaria vesca HOM05D004244 ORTHO05D004964 2.8e-49 199.9 295 44.1
Rhsim09G0132600 Rhododendron simsii HOM05D004244 ORTHO05D004964 8.1e-49 198.4 308 43.8
CsaV3_2G012190 Cucumis sativus L. HOM05D004244 ORTHO05D004964 1.2e-47 194.5 255 47.1
FAN17G1122 Fragaria x ananassa HOM05D004244 ORTHO05D004964 1.2e-47 194.5 295 43.1
QL06p021978 Quercus lobata HOM05D004244 ORTHO05D004964 1.2e-47 194.5 195 59.0
Actinidia34761 Actinidia chinensis HOM05D004244 ORTHO05D004964 5.8e-47 192.2 308 41.9
Manes.03G156200 Manihot esculenta HOM05D004244 ORTHO05D004964 1.0e-46 191.4 274 43.8
Dinv27132 Davidia involucrata HOM05D004244 ORTHO05D004964 1.3e-46 191.0 287 45.6
MD13G1225800 Malus domestica HOM05D004244 ORTHO05D004964 2.2e-46 190.3 290 42.1
MELO3C023072.2 Cucumis melo HOM05D004244 ORTHO05D004964 3.8e-46 189.5 256 46.9
GSVIVG01026322001 Vitis vinifera HOM05D004244 ORTHO05D004964 4.9e-46 189.1 194 55.2
Actinidia38930 Actinidia chinensis HOM05D004244 ORTHO05D004964 1.1e-45 188.0 303 42.6
Duzib052G0780 Durio zibethinus HOM05D004244 ORTHO05D004964 1.6e-44 184.1 254 45.3
Glyma.10G132400 Glycine max HOM05D004244 ORTHO05D004964 1.0e-43 181.4 278 40.6
Lalb_Chr03g0036891 Lupinus albus HOM05D004244 ORTHO05D004964 1.0e-43 181.4 270 42.6
Cfa014824 Carpinus fangiana HOM05D004244 ORTHO05D004964 1.8e-43 180.6 196 55.6
CDE11G0045 Ceratophyllum demersum HOM05D004244 ORTHO05D004964 6.7e-43 178.7 269 43.1
COL.COLO4_16006 Corchorus olitorius HOM05D004244 ORTHO05D004964 8.7e-43 178.3 303 42.9
Atru.chr2.1111 Acer truncatum HOM05D004244 ORTHO05D004964 1.5e-42 177.6 268 45.1
Nitab4.5_0000841g0060 Nicotiana tabacum HOM05D004244 ORTHO05D004964 1.9e-42 177.2 267 41.9
Hma1.2p1_0112F.1_g054970 Hydrangea macrophylla HOM05D004244 ORTHO05D004964 7.4e-42 175.3 308 39.9
Nitab4.5_0008594g0020 Nicotiana tabacum HOM05D004244 ORTHO05D004964 7.4e-42 175.3 265 42.6
Duzib052G0270 Durio zibethinus HOM05D004244 ORTHO05D004964 2.1e-41 173.7 198 51.5
Actinidia11381 Actinidia chinensis HOM05D004244 ORTHO05D004964 3.7e-41 172.9 219 48.9
Hma1.2p1_0130F.1_g060490 Hydrangea macrophylla HOM05D004244 ORTHO05D004964 8.2e-41 171.8 314 40.4
TPR.G23981 Trifolium pratense HOM05D004244 ORTHO05D004964 1.1e-40 171.4 293 42.3
Phvul.007G227000 Phaseolus vulgaris HOM05D004244 ORTHO05D004964 1.4e-40 171.0 297 40.1
Medtr1g045520 Medicago truncatula HOM05D004244 ORTHO05D004964 5.3e-40 169.1 202 48.5
Ca_11893_v3 Cicer arietinum L. HOM05D004244 ORTHO05D004964 6.9e-40 168.7 291 38.1
CANSAT78G2336 Cannabis sativa HOM05D004244 ORTHO05D004964 9.0e-40 168.3 307 41.0
Ciclev10021373m.g Citrus clementina HOM05D004244 ORTHO05D004964 1.5e-39 167.5 295 41.0
Haze_11497 Corylus avellana HOM05D004244 ORTHO05D004964 2.0e-39 167.2 182 55.5
Thecc.04G269100 Theobroma cacao HOM05D004244 ORTHO05D004964 2.0e-39 167.2 304 40.1
Lj6g0017438 Lotus japonicus HOM05D004244 ORTHO05D004964 3.4e-39 166.4 291 38.8
arahy.Tifrunner.gnm1.ann1.9VYP7U Arachis hypogaea HOM05D004244 ORTHO05D004964 1.0e-38 164.9 255 42.7
arahy.Tifrunner.gnm1.ann1.QYR710 Arachis hypogaea HOM05D004244 ORTHO05D004964 1.7e-38 164.1 268 41.8
Manes.08G141600 Manihot esculenta HOM05D004244 ORTHO05D004964 8.4e-38 161.8 295 40.7
Migut.F02055 Erythranthe guttata HOM05D004244 ORTHO05D004964 1.1e-37 161.4 268 39.6
Oeu010184.1 Olea europaea HOM05D004244 ORTHO05D004964 3.2e-37 159.8 271 39.9
Eucgr.B01738 Eucalyptus grandis HOM05D004244 ORTHO05D004964 7.2e-37 158.7 270 43.0
Potri.010G063300 Populus trichocarpa HOM05D004244 ORTHO05D004964 1.6e-36 157.5 260 40.4
Gohir.D09G232300 Gossypium hirsutum HOM05D004244 ORTHO05D004964 7.9e-36 155.2 302 40.7
Gohir.D11G254600 Gossypium hirsutum HOM05D004244 ORTHO05D004964 1.8e-35 154.1 226 44.2
Gorai.006G255200 Gossypium raimondii HOM05D004244 ORTHO05D004964 1.8e-35 154.1 300 40.0
Gorai.007G273200 Gossypium raimondii HOM05D004244 ORTHO05D004964 1.8e-35 154.1 226 44.2
Peaxi162Scf00125g01118 Petunia axillaris HOM05D004244 ORTHO05D004964 1.8e-35 154.1 254 41.3
TWI09G1213 Tripterygium wilfordii HOM05D004244 ORTHO05D004964 2.3e-35 153.7 256 42.2
SalBow1G0411 Salvia bowleyana HOM05D004244 ORTHO05D004964 3.0e-35 153.3 268 37.7
Gohir.A09G231200 Gossypium hirsutum HOM05D004244 ORTHO05D004964 6.7e-35 152.1 298 40.9
Potri.019G023400 Populus trichocarpa HOM05D004244 ORTHO05D004964 1.5e-34 151.0 318 37.7
PGR031G0411 Punica granatum HOM05D004244 ORTHO05D004964 1.9e-34 150.6 228 42.1
Cc09_g03010 Coffea canephora HOM05D004244 ORTHO05D004964 2.5e-34 150.2 313 36.1
Duzib106G0844 Durio zibethinus HOM05D004244 ORTHO05D004964 2.5e-34 150.2 249 41.0
Rhsim02G0048800 Rhododendron simsii HOM05D004244 ORTHO05D004964 9.7e-34 148.3 259 39.0
Lsat_1_v5_gn_2_42020 Lactuca sativa HOM05D004244 ORTHO05D004964 3.7e-33 146.4 257 39.3
Cpa.g.sc59.37 Carica papaya HOM05D004244 ORTHO05D004964 4.8e-33 146.0 204 46.6
Cc03_g06840 Coffea canephora HOM05D004244 ORTHO05D004964 1.4e-32 144.4 245 41.2
Nitab4.5_0000451g0020 Nicotiana tabacum HOM05D004244 ORTHO05D004964 5.3e-32 142.5 253 40.3
VMungo0720G2410 Vigna mungo HOM05D004244 ORTHO05D004964 5.3e-32 142.5 185 49.7
Cpa.g.sc756.3 Carica papaya HOM05D004244 ORTHO05D004964 2.6e-31 140.2 186 46.8
Sopen04g021060 Solanum pennellii HOM05D004244 ORTHO05D004964 1.0e-30 138.3 300 35.7
Thecc.05G266700 Theobroma cacao HOM05D004244 ORTHO05D004964 1.3e-30 137.9 237 40.9
ClCG06G007490 Citrullus lanatus HOM05D004244 ORTHO05D004964 2.2e-30 137.1 310 37.1
PGSC0003DMG402001493 Solanum tuberosum HOM05D004244 ORTHO05D004964 2.2e-30 137.1 272 38.6
Gohir.A11G244500 Gossypium hirsutum HOM05D004244 ORTHO05D004964 2.9e-30 136.7 218 42.7
Nitab4.5_0000867g0080 Nicotiana tabacum HOM05D004244 ORTHO05D004964 3.8e-30 136.3 198 44.4
Lj2C46G4 Lonicera japonica HOM05D004244 ORTHO05D004964 5.0e-30 136.0 174 48.9
HPP92_025817 Vanilla planifolia HOM05D004244 ORTHO05D004964 5.0e-30 136.0 314 39.5
MSTRG.9217 Avicennia marina HOM05D004244 ORTHO05D004964 6.5e-30 135.6 278 34.5
MSTRG.24646 Avicennia marina HOM05D004244 ORTHO05D004964 7.2e-29 132.1 261 37.5
Sc19g0005660 Simmondsia chinensis HOM05D004244 ORTHO05D004964 9.4e-29 131.7 257 38.1
Sabra19G0033400 Salix brachista HOM05D004244 ORTHO05D004964 2.1e-28 130.6 354 34.7
Atru.chr4.1873 Acer truncatum HOM05D004244 ORTHO05D004964 2.7e-28 130.2 196 44.9
SGA_v2.0_scaffold329G48831 Striga asiatica HOM05D004244 ORTHO05D004964 2.7e-28 130.2 268 36.2
Eucgr.H02883 Eucalyptus grandis HOM05D004244 ORTHO05D004964 3.6e-28 129.8 316 34.2
Peaxi162Scf00077g00117 Petunia axillaris HOM05D004244 ORTHO05D004964 4.6e-28 129.4 247 38.9
Sopen09g033990 Solanum pennellii HOM05D004244 ORTHO05D004964 7.9e-28 128.6 273 37.4
COL.COLO4_15535 Corchorus olitorius HOM05D004244 ORTHO05D004964 1.4e-27 127.9 235 35.3
Solyc09g091010.3 Solanum lycopersicum HOM05D004244 ORTHO05D004964 1.4e-27 127.9 272 37.5
Sabra10G0043500 Salix brachista HOM05D004244 ORTHO05D004964 3.0e-27 126.7 197 41.6
ATR0723G041 Amborella trichopoda HOM05D004244 ORTHO05D004964 3.9e-27 126.3 195 43.6
Psat1g024120 Pisum sativum HOM05D004244 ORTHO05D004964 3.9e-27 126.3 197 40.1
EL10Ac3g06716 Beta vulgaris HOM05D004244 ORTHO05D004964 1.5e-26 124.4 310 32.9
SalBow3G0496 Salvia bowleyana HOM05D004244 ORTHO05D004964 1.5e-26 124.4 207 41.1
SalBow3G1459 Salvia bowleyana HOM05D004244 ORTHO05D004964 1.5e-26 124.4 207 41.1
CAN.G4.41 Capsicum annuum HOM05D004244 ORTHO05D004964 2.5e-26 123.6 180 44.4
Migut.N00322 Erythranthe guttata HOM05D004244 ORTHO05D004964 4.8e-25 119.4 301 35.5
PGR004G0368 Punica granatum HOM05D004244 ORTHO05D004964 4.8e-25 119.4 305 33.1
Sc09g0001820 Simmondsia chinensis HOM05D004244 ORTHO05D004964 1.8e-24 117.5 313 34.8
CSS0047223 Camellia sinensis var. sinensis HOM05D004244 ORTHO05D004964 2.4e-24 117.1 155 49.7
CSS0047414 Camellia sinensis var. sinensis HOM05D004244 ORTHO05D004964 2.4e-24 117.1 155 49.7
Hund07175 Selenicereus undatus HOM05D004244 ORTHO05D004964 1.3e-22 111.3 292 32.9
vmacro10383 Vaccinium macrocarpon HOM05D004244 ORTHO05D004964 2.2e-22 110.5 234 38.0
EL10Ac4g09763 Beta vulgaris HOM05D004244 ORTHO05D004964 2.9e-22 110.2 284 30.6
SGA_v2.0_scaffold398G50771 Striga asiatica HOM05D004244 ORTHO05D004964 1.9e-21 107.5 183 41.5
Duzib151G0660 Durio zibethinus HOM05D004244 ORTHO05D004964 3.2e-21 106.7 199 40.2
Actinidia39939 Actinidia chinensis HOM05D004244 ORTHO05D004964 4.2e-21 106.3 197 39.6
Duzib266G0003 Durio zibethinus HOM05D004244 ORTHO05D004964 4.2e-21 106.3 128 46.9
Sed0027895 Sechium edule HOM05D004244 ORTHO05D004964 7.2e-21 105.5 264 34.5
AT2G33250 Arabidopsis thaliana HOM05D004244 ORTHO05D004964 3.6e-20 103.2 297 33.0
ECA238G3737 Erigeron canadensis HOM05D004244 ORTHO05D004964 6.1e-20 102.4 203 36.5
Thhalv10017015m.g Eutrema salsugineum HOM05D004244 ORTHO05D004964 6.1e-20 102.4 292 32.9
Carub.0004s1471 Capsella rubella HOM05D004244 ORTHO05D004964 7.9e-20 102.1 198 36.4
AL4G28880 Arabidopsis lyrata HOM05D004244 ORTHO05D004964 1.0e-19 101.7 287 33.4
PGSC0003DMG402028717 Solanum tuberosum HOM05D004244 ORTHO05D004964 1.4e-19 101.3 177 41.2
Sp4g15550 Schrenkiella parvula HOM05D004244 ORTHO05D004964 2.3e-19 100.5 328 30.5
Carub.0003s0352 Capsella rubella HOM05D004244 ORTHO05D004964 3.0e-19 100.1 189 37.6
Sp3g03210 Schrenkiella parvula HOM05D004244 ORTHO05D004964 6.7e-19 99.0 183 39.9
Ciclev10005346m.g Citrus clementina HOM05D004244 ORTHO05D004964 1.5e-18 97.8 231 33.8
CARHR127250 Cardamine hirsuta HOM05D004244 ORTHO05D004964 2.0e-18 97.4 193 36.3
Hund24865 Selenicereus undatus HOM05D004244 ORTHO05D004964 2.0e-18 97.4 203 36.0
Aa31LG5G4140 Aethionema arabicum HOM05D004244 ORTHO05D004964 3.3e-18 96.7 240 34.6
CARHR078490 Cardamine hirsuta HOM05D004244 ORTHO05D004964 5.7e-18 95.9 275 31.3
AL3G14300 Arabidopsis lyrata HOM05D004244 ORTHO05D004964 1.3e-17 94.7 214 33.2
BcaC02g07847 Brassica carinata HOM05D004244 ORTHO05D004964 1.3e-17 94.7 316 31.0
Oeu008815.1 Olea europaea HOM05D004244 ORTHO05D004964 1.3e-17 94.7 158 43.7
unitig_26.g9547 Utricularia gibba HOM05D004244 ORTHO05D004964 1.3e-17 94.7 213 35.7
AT3G04310 Arabidopsis thaliana HOM05D004244 ORTHO05D004964 2.2e-17 94.0 188 36.7
Aa31LG5G14830 Aethionema arabicum HOM05D004244 ORTHO05D004964 1.1e-16 91.7 186 38.2
Solyc04g050270.1 Solanum lycopersicum HOM05D004244 ORTHO05D004964 2.4e-16 90.5 169 39.1
SalBow1G6706 Salvia bowleyana HOM05D004244 ORTHO05D004964 7.0e-16 89.0 204 32.4
THA.LOC104826102 Tarenaya hassleriana HOM05D004244 ORTHO05D004964 4.5e-15 86.3 202 37.1
BcaC02g07850 Brassica carinata HOM05D004244 ORTHO05D004964 5.9e-15 85.9 185 34.6
AUR62006986 Chenopodium quinoa HOM05D004244 ORTHO05D004964 7.7e-15 85.5 176 36.4
Thhalv10021319m.g Eutrema salsugineum HOM05D004244 ORTHO05D004964 7.7e-15 85.5 188 36.7
BolC4t27754H Brassica oleracea HOM05D006155 ORTHO05D007529 1.3e-14 84.7 303 31.4
BraA04t18060Z Brassica rapa HOM05D006155 ORTHO05D007529 1.7e-14 84.3 217 32.7
Zm00001eb360230 Zea mays HOM05D004244 ORTHO05D004964 1.7e-14 84.3 248 31.5
C04p62700 Brassica napus HOM05D006155 ORTHO05D007529 2.9e-14 83.6 303 31.0
BcaC01g04379 Brassica carinata HOM05D004244 ORTHO05D004964 5.0e-14 82.8 238 32.4
A03p33580 Brassica napus HOM05D004244 ORTHO05D004964 5.0e-14 82.8 237 31.2
BraA03t12533Z Brassica rapa HOM05D004244 ORTHO05D004964 8.5e-14 82.0 237 30.8
A04p25560 Brassica napus HOM05D004244 ORTHO05D004964 1.1e-13 81.6 180 33.9
C03p40780 Brassica napus HOM05D004244 ORTHO05D004964 1.5e-13 81.3 281 29.5
BolC3t16346H Brassica oleracea HOM05D004244 ORTHO05D004964 1.5e-13 81.3 281 29.5
AUR62000633 Chenopodium quinoa HOM05D004244 ORTHO05D004964 1.5e-13 81.3 184 36.4
Medtr4g088590 Medicago truncatula HOM05D004244 ORTHO05D004964 1.9e-13 80.9 112 41.1
Ah.06g187950 Amaranthus hybridus HOM05D004244 ORTHO05D004964 7.2e-13 79.0 143 39.2
BcaB04g19340 Brassica carinata HOM05D004244 ORTHO05D004964 1.2e-12 78.2 188 35.1
DCAR_030773 Daucus carota HOM05D004244 ORTHO05D004964 2.1e-12 77.4 152 40.8
BcaB06g28663 Brassica carinata HOM05D006155 ORTHO05D007529 2.7e-12 77.0 184 33.2
Zm00001eb156930 Zea mays HOM05D004244 ORTHO05D004964 8.0e-12 75.5 345 27.8
Os01g0680600 Oryza sativa ssp. japonica HOM05D004244 ORTHO05D004964 3.7e-09 66.6 219 29.2


User provided reference genes

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