Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g03023 Nelumbo nucifera HOM05D006210 ORTHO05D007510 5.1e-207 724.2 360 100.0
TAR362G1053 Trochodendron aralioides HOM05D006210 ORTHO05D007510 6.7e-159 564.3 363 77.7
MBI10_g26060_MAGBIO Magnolia biondii HOM05D006210 ORTHO05D007510 1.3e-149 533.5 363 71.9
GSVIVG01028451001 Vitis vinifera HOM05D006210 ORTHO05D007510 2.0e-147 526.2 365 71.0
CiPaw.03G272200 Carya illinoinensis HOM05D006210 ORTHO05D007510 4.2e-145 518.5 362 68.2
QL09p042418 Quercus lobata HOM05D006210 ORTHO05D007510 9.4e-145 517.3 379 67.0
Ciclev10020743m.g Citrus clementina HOM05D006210 ORTHO05D007510 4.7e-144 515.0 363 68.3
Potri.002G255300 Populus trichocarpa HOM05D006210 ORTHO05D007510 1.0e-143 513.8 359 70.2
Rhsim13G0040700 Rhododendron simsii HOM05D006210 ORTHO05D007510 1.8e-143 513.1 370 67.0
Prupe.1G573100 Prunus persica HOM05D006210 ORTHO05D007510 1.1e-142 510.4 363 67.8
Aqoxy5G00102 Aquilegia oxysepala HOM05D006210 ORTHO05D007510 1.5e-142 510.0 363 70.2
Actinidia30115 Actinidia chinensis HOM05D006210 ORTHO05D007510 3.3e-142 508.8 361 69.0
Atru.chr5.2084_Atru.chr5.2085 Acer truncatum HOM05D006210 ORTHO05D007510 2.2e-141 506.1 364 67.9
Manes.13G038600 Manihot esculenta HOM05D006210 ORTHO05D007510 4.1e-140 501.9 359 68.2
PSO170G6901 Papaver somniferum HOM05D006210 ORTHO05D007510 3.5e-139 498.8 365 68.5
PSO210G7683 Papaver somniferum HOM05D006210 ORTHO05D007510 4.5e-139 498.4 365 68.5
Thecc.01G247800 Theobroma cacao HOM05D006210 ORTHO05D007510 1.5e-137 493.4 362 65.7
PGR031G0293 Punica granatum HOM05D006210 ORTHO05D007510 3.2e-137 492.3 361 65.7
SalBow5G1930 Salvia bowleyana HOM05D006210 ORTHO05D007510 4.2e-137 491.9 372 63.2
Hma1.2p1_2051F.1_g312580 Hydrangea macrophylla HOM05D006210 ORTHO05D007510 3.6e-136 488.8 360 66.7
CsaV3_3G028470 Cucumis sativus L. HOM05D006210 ORTHO05D007510 4.7e-136 488.4 363 64.5
MELO3C012833.2 Cucumis melo HOM05D006210 ORTHO05D007510 6.1e-136 488.0 365 64.7
Sed0025577 Sechium edule HOM05D006210 ORTHO05D007510 6.1e-136 488.0 365 64.1
FvH4_2g20260 Fragaria vesca HOM05D006210 ORTHO05D007510 8.0e-136 487.6 365 65.8
Lj1C76G7 Lonicera japonica HOM05D006210 ORTHO05D007510 1.8e-135 486.5 372 65.6
Duzib138G0227 Durio zibethinus HOM05D006210 ORTHO05D007510 2.3e-135 486.1 358 65.1
TWI18G1043 Tripterygium wilfordii HOM05D006210 ORTHO05D007510 5.2e-135 485.0 358 65.9
Gohir.D11G140400 Gossypium hirsutum HOM05D006210 ORTHO05D007510 6.7e-135 484.6 363 64.5
Dinv43053 Davidia involucrata HOM05D006210 ORTHO05D007510 2.0e-134 483.0 340 70.9
Gohir.A11G134300 Gossypium hirsutum HOM05D006210 ORTHO05D007510 2.0e-134 483.0 363 64.2
Eucgr.A01369 Eucalyptus grandis HOM05D006210 ORTHO05D007510 4.4e-134 481.9 363 64.5
CANSAT01G0995 Cannabis sativa HOM05D006210 ORTHO05D007510 6.3e-133 478.0 364 64.3
Phvul.007G154100 Phaseolus vulgaris HOM05D006210 ORTHO05D007510 1.4e-132 476.9 360 63.9
ECA247G1810 Erigeron canadensis HOM05D006210 ORTHO05D007510 3.1e-132 475.7 365 64.7
Oeu058104.1 Olea europaea HOM05D006210 ORTHO05D007510 4.1e-132 475.3 361 64.5
MSTRG.22887 Avicennia marina HOM05D006210 ORTHO05D007510 9.1e-132 474.2 360 63.9
Migut.O00355 Erythranthe guttata HOM05D006210 ORTHO05D007510 1.6e-131 473.4 360 64.2
Glyma.10G040900 Glycine max HOM05D006210 ORTHO05D007510 1.6e-131 473.4 360 64.2
Sopen09g025510 Solanum pennellii HOM05D006210 ORTHO05D007510 1.6e-131 473.4 368 63.9
Glyma.13G127800 Glycine max HOM05D006210 ORTHO05D007510 7.7e-131 471.1 360 64.2
TPR.G28794 Trifolium pratense HOM05D006210 ORTHO05D007510 2.2e-130 469.5 368 63.3
CSS0033273 Camellia sinensis var. sinensis HOM05D006210 ORTHO05D007510 5.0e-130 468.4 370 64.6
Lalb_Chr21g0314151 Lupinus albus HOM05D006210 ORTHO05D007510 1.1e-129 467.2 375 62.1
PGSC0003DMG400007719 Solanum tuberosum HOM05D006210 ORTHO05D007510 1.5e-129 466.8 369 62.9
Ca_09640_v3 Cicer arietinum L. HOM05D006210 ORTHO05D007510 3.2e-129 465.7 360 63.6
Lj5g0001397 Lotus japonicus HOM05D006210 ORTHO05D007510 3.2e-129 465.7 360 63.3
Psat6g064440 Pisum sativum HOM05D006210 ORTHO05D007510 3.2e-129 465.7 361 64.0
Carub.0001s0328 Capsella rubella HOM05D006210 ORTHO05D007510 9.4e-129 464.2 361 60.9
Cfa002496 Carpinus fangiana HOM05D006210 ORTHO05D007510 1.6e-128 463.4 335 67.8
Sp1g02950 Schrenkiella parvula HOM05D006210 ORTHO05D007510 2.1e-128 463.0 361 60.7
unitig_22.g6263 Utricularia gibba HOM05D006210 ORTHO05D007510 2.1e-128 463.0 373 60.9
BraA09t42139Z Brassica rapa HOM05D006210 ORTHO05D007510 4.7e-128 461.8 384 58.6
Hund18317 Selenicereus undatus HOM05D006210 ORTHO05D007510 4.7e-128 461.8 359 61.3
AT1G04130 Arabidopsis thaliana HOM05D006210 ORTHO05D007510 8.0e-128 461.1 361 60.4
CARHR003480 Cardamine hirsuta HOM05D006210 ORTHO05D007510 8.0e-128 461.1 361 60.4
FAN27G1100 Fragaria x ananassa HOM05D006210 ORTHO05D007510 8.0e-128 461.1 365 63.6
Thhalv10008004m.g Eutrema salsugineum HOM05D006210 ORTHO05D007510 1.0e-127 460.7 363 60.3
THA.LOC104801120 Tarenaya hassleriana HOM05D006210 ORTHO05D007510 1.0e-127 460.7 357 62.5
AL1G13730 Arabidopsis lyrata HOM05D006210 ORTHO05D007510 2.3e-127 459.5 361 59.6
BcaC07g42211 Brassica carinata HOM05D006210 ORTHO05D007510 1.2e-126 457.2 365 60.8
BolC8t52775H Brassica oleracea HOM05D006210 ORTHO05D007510 1.5e-126 456.8 389 57.8
ClCG00G001600 Citrullus lanatus HOM05D006210 ORTHO05D007510 9.8e-126 454.1 359 62.7
Aa31LG1G20710 Aethionema arabicum HOM05D006210 ORTHO05D007510 6.3e-125 451.4 364 60.2
Ah.15g091520 Amaranthus hybridus HOM05D006210 ORTHO05D007510 3.1e-124 449.1 358 60.1
C08p52480 Brassica napus HOM05D006210 ORTHO05D007510 4.1e-124 448.7 363 59.5
Sabra02G0194000 Salix brachista HOM05D006210 ORTHO05D007510 4.1e-124 448.7 385 61.3
A09p68040 Brassica napus HOM05D006210 ORTHO05D007510 2.0e-123 446.4 363 59.8
HanXRQChr10g0280241 Helianthus annuus HOM05D006210 ORTHO05D007510 2.9e-122 442.6 366 60.9
Cpa.g.sc87.54 Carica papaya HOM05D006210 ORTHO05D007510 1.2e-120 437.2 423 54.6
VMungo0720G2771 Vigna mungo HOM05D006210 ORTHO05D007510 1.4e-119 433.7 360 60.8
COL.COLO4_37372 Corchorus olitorius HOM05D006210 ORTHO05D007510 1.2e-118 430.6 365 58.9
Nitab4.5_0000385g0060 Nicotiana tabacum HOM05D006210 ORTHO05D007510 9.8e-118 427.6 363 59.8
Zm00001eb057360 Zea mays HOM05D006210 ORTHO05D007510 2.8e-117 426.0 374 56.7
SEGI_04783 Sequoiadendron giganteum HOM05D006210 ORTHO05D007510 1.1e-116 424.1 364 57.7
arahy.Tifrunner.gnm1.ann1.J3R5E0 Arachis hypogaea HOM05D006210 ORTHO05D007510 1.4e-116 423.7 354 61.9
SGA_v2.0_scaffold382G50403 Striga asiatica HOM05D006210 ORTHO05D007510 5.4e-116 421.8 327 62.4
BcaC07g42208 Brassica carinata HOM05D006210 ORTHO05D007510 2.7e-115 419.5 369 57.2
AUR62025420 Chenopodium quinoa HOM05D006210 ORTHO05D007510 2.7e-115 419.5 360 57.8
arahy.Tifrunner.gnm1.ann1.6WB007 Arachis hypogaea HOM05D006210 ORTHO05D007510 5.0e-114 415.2 360 60.0
Haze_24722 Corylus avellana HOM05D006210 ORTHO05D007510 5.2e-111 405.2 353 59.2
ClCG07G001460 Citrullus lanatus HOM05D006210 ORTHO05D007510 1.2e-110 404.1 391 54.5
ATR0723G059 Amborella trichopoda HOM05D006210 ORTHO05D007510 9.2e-108 394.4 359 57.4
Cc01_g17680 Coffea canephora HOM05D006210 ORTHO05D007510 1.2e-104 384.0 364 56.0
arahy.Tifrunner.gnm1.ann1.GM89QY Arachis hypogaea HOM05D006210 ORTHO05D007510 1.6e-104 383.6 349 57.3
Peaxi162Scf00043g00235 Petunia axillaris HOM05D006210 ORTHO05D007510 2.1e-104 383.3 328 58.5
AUR62008821 Chenopodium quinoa HOM05D006210 ORTHO05D007510 3.5e-99 365.9 360 52.5
MD10G1174300 Malus domestica HOM05D006210 ORTHO05D007510 3.2e-92 342.8 238 68.5
DCAR_000557 Daucus carota HOM05D006210 ORTHO05D007510 9.2e-92 341.3 238 70.2
CAN.G119.7 Capsicum annuum HOM05D006210 ORTHO05D007510 1.6e-91 340.5 245 68.6
Pp3c19_11990 Physcomitrium patens HOM05D006210 ORTHO05D007510 7.8e-91 338.2 361 50.1
FAN24G1818 Fragaria x ananassa HOM05D006210 ORTHO05D007510 1.7e-90 337.0 238 68.9
RcHm_v2.0_Chr6g0286041 Rosa chinensis HOM05D006210 ORTHO05D007510 1.7e-90 337.0 238 69.3
HPP92_025825 Vanilla planifolia HOM05D006210 ORTHO05D007510 2.3e-90 336.7 361 49.6
arahy.Tifrunner.gnm1.ann1.5C4SPF Arachis hypogaea HOM05D006210 ORTHO05D007510 1.1e-89 334.3 238 66.8
Mapoly0012s0146 Marchantia polymorpha HOM05D006210 ORTHO05D007510 2.5e-89 333.2 359 47.9
Hma1.2p1_2051F.1_g312575 Hydrangea macrophylla HOM05D006210 ORTHO05D007510 1.6e-88 330.5 238 68.5
Solyc09g064380.3 Solanum lycopersicum HOM05D006210 ORTHO05D007510 2.1e-88 330.1 238 68.5
AagrBONN_evm.TU.Sc2ySwM_228.4049__4050 Anthoceros agrestis HOM05D006210 ORTHO05D007510 2.3e-82 310.1 302 51.7
Prupe.8G213100 Prunus persica HOM05D006210 ORTHO05D007510 5.6e-81 305.4 361 49.3
Lsat_1_v5_gn_9_11700 Lactuca sativa HOM05D006210 ORTHO05D007510 3.1e-79 299.7 292 55.5
Gorai.007G150600 Gossypium raimondii HOM05D006210 ORTHO05D007510 2.4e-76 290.0 221 63.8
EL10Ac7g17713 Beta vulgaris HOM05D006210 ORTHO05D007510 1.3e-74 284.3 238 56.7
Nitab4.5_0000392g0100 Nicotiana tabacum HOM05D006210 ORTHO05D007510 6.4e-69 265.4 307 48.2
CBR_g36953 Chara braunii HOM05D006210 ORTHO05D007510 6.2e-64 248.8 299 44.8
Os03g0750100 Oryza sativa ssp. japonica HOM05D006210 ORTHO05D007510 2.9e-61 240.0 262 51.1
Sc05g0002800 Simmondsia chinensis HOM05D006210 ORTHO05D007510 3.5e-51 206.5 362 35.6
PRCOL_00004543 Prasinoderma coloniale HOM05D006210 ORTHO05D007510 3.2e-44 183.3 365 34.5
Cre08.g375650 Chlamydomonas reinhardtii HOM05D006210 ORTHO05D007510 5.7e-41 172.6 363 31.4
MD10G1174200 Malus domestica HOM05D006210 ORTHO05D007510 5.7e-41 172.6 128 64.1
MCO01G218 Micromonas commoda HOM05D006210 ORTHO05D007510 3.8e-37 159.8 362 32.6
Hma1.2p1_0559F.1_g178660 Hydrangea macrophylla HOM05D000705 ORTHO05D007510 1.9e-36 157.5 102 72.5
DCAR_000556 Daucus carota HOM05D006210 ORTHO05D007510 4.2e-36 156.4 127 59.8
CAN.G119.6 Capsicum annuum HOM05D006210 ORTHO05D007510 7.9e-35 152.1 128 57.0
RcHm_v2.0_Chr6g0286031 Rosa chinensis HOM05D006210 ORTHO05D007510 5.1e-34 149.4 131 58.0
HanXRQChr01g0013201 Helianthus annuus HOM05D006210 ORTHO05D007510 5.7e-33 146.0 127 56.7
TAR349G0001 Trochodendron aralioides HOM05D006210 ORTHO05D007510 1.3e-29 134.8 187 46.5
MD05G1186500 Malus domestica HOM05D006210 ORTHO05D007510 8.5e-29 132.1 90 71.1
vmacro02716 Vaccinium macrocarpon HOM05D006210 ORTHO05D007510 2.0e-22 110.9 98 55.1
MD05G1186300 Malus domestica HOM05D006210 ORTHO05D007510 2.9e-21 107.1 89 61.8
Actinidia37561 Actinidia chinensis HOM05D006210 ORTHO05D007510 4.4e-17 93.2 106 44.3
Sc05g0002820 Simmondsia chinensis HOM05D006210 ORTHO05D007510 1.3e-16 91.7 100 45.0
Zm00001eb416010 Zea mays HOM05D017284 ORTHO05D007510 1.9e-12 77.8 79 49.4
SEGI_25119 Sequoiadendron giganteum HOM05D006210 ORTHO05D007510 3.2e-12 77.0 49 65.3
SMO196G0213 Selaginella moellendorffii HOM05D006210 ORTHO05D007510 3.0e-10 70.5 99 38.4
SMO234G0002 Selaginella moellendorffii HOM05D006210 ORTHO05D007510 2.0e-09 67.8 104 37.5
Carub.0002s0770 Capsella rubella HOM05D001340 ORTHO05D005342 1.3e-08 65.1 109 40.4
CARHR055170 Cardamine hirsuta HOM05D001340 ORTHO05D005342 2.8e-08 63.9 109 40.4
BcaB04g20162 Brassica carinata HOM05D001340 ORTHO05D005342 3.7e-08 63.5 109 39.4
AL1G66140 Arabidopsis lyrata HOM05D001340 ORTHO05D005342 4.8e-08 63.2 109 40.4
AT1G56440 Arabidopsis thaliana HOM05D001340 ORTHO05D005342 4.8e-08 63.2 109 39.4
Solyc10g045540.2 Solanum lycopersicum HOM05D001340 ORTHO05D005342 4.8e-08 63.2 255 27.1
BcaC09g49556 Brassica carinata HOM05D001340 ORTHO05D005342 6.3e-08 62.8 109 39.4
Sopen10g015810 Solanum pennellii HOM05D001340 ORTHO05D005342 1.1e-07 62.0 255 27.1
Nitab4.5_0000155g0120 Nicotiana tabacum HOM05D001340 ORTHO05D005342 2.4e-07 60.8 172 29.7
CBR_g48354 Chara braunii HOM05D001340 ORTHO05D005342 4.1e-07 60.1 134 34.3
Ciclev10030128m.g Citrus clementina HOM05D005592 ORTHO05D006067 4.1e-07 60.1 103 35.9
Thhalv10023436m.g Eutrema salsugineum HOM05D001340 ORTHO05D005342 4.1e-07 60.1 164 32.9
SGA_v2.0_scaffold4G01971 Striga asiatica HOM05D001340 ORTHO05D005342 5.4e-07 59.7 173 32.4
GSVIVG01018026001 Vitis vinifera HOM05D006451 ORTHO05D007680 5.4e-07 59.7 171 31.0
BcaC02g10729 Brassica carinata HOM05D001340 ORTHO05D005342 1.2e-06 58.5 139 35.3
CBR_g3787 Chara braunii HOM05D001340 ORTHO05D005342 1.2e-06 58.5 114 35.1
Prupe.6G312500 Prunus persica HOM05D001340 ORTHO05D002318 1.6e-06 58.2 109 36.7
Aqoxy6G02518 Aquilegia oxysepala HOM05D006210 ORTHO05D007510 2.0e-06 57.8 63 52.4
Lalb_Chr01g0020941 Lupinus albus HOM05D006451 ORTHO05D007680 2.0e-06 57.8 148 30.4
Lj5C332T2 Lonicera japonica HOM05D001340 ORTHO05D005342 2.7e-06 57.4 123 36.6
Nn4g25585 Nelumbo nucifera HOM05D001340 ORTHO05D005342 3.5e-06 57.0 109 37.6
Glyma.10G003800 Glycine max HOM05D006451 ORTHO05D007680 4.5e-06 56.6 131 31.3
Sed0025878 Sechium edule HOM05D001340 ORTHO05D005342 4.5e-06 56.6 117 35.9
Lj6g0024617 Lotus japonicus HOM05D006451 ORTHO05D007680 5.9e-06 56.2 155 29.7
CANSAT54G2301 Cannabis sativa HOM05D001340 ORTHO05D005342 7.7e-06 55.8 160 30.0
CsaV3_2G007140 Cucumis sativus L. HOM05D001340 ORTHO05D005342 7.7e-06 55.8 117 35.9
Glyma.02G004400 Glycine max HOM05D006451 ORTHO05D007680 7.7e-06 55.8 118 31.4


User provided reference genes

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