Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g03021 Nelumbo nucifera HOM05D000780 ORTHO05D009033 9.3e-162 573.5 302 100.0
TAR633G0111 Trochodendron aralioides HOM05D000780 ORTHO05D009033 2.9e-115 419.1 304 76.0
FvH4_6g01461 Fragaria vesca HOM05D000780 ORTHO05D009033 2.0e-108 396.4 304 72.4
GSVIVG01026324001 Vitis vinifera HOM05D000780 ORTHO05D009033 1.0e-107 394.0 307 71.7
Ciclev10021307m.g Citrus clementina HOM05D000780 ORTHO05D009033 3.2e-106 389.0 303 71.3
MD12G1251900 Malus domestica HOM05D000780 ORTHO05D009033 5.5e-106 388.3 302 71.5
CSS0005756 Camellia sinensis var. sinensis HOM05D000780 ORTHO05D009033 5.2e-104 381.7 305 69.2
RcHm_v2.0_Chr3g0449091 Rosa chinensis HOM05D000780 ORTHO05D009033 2.0e-103 379.8 305 69.5
PGR004G1412 Punica granatum HOM05D000780 ORTHO05D009033 3.3e-103 379.0 309 70.2
Thecc.05G266300 Theobroma cacao HOM05D000780 ORTHO05D009033 3.3e-103 379.0 291 70.8
Gohir.A13G161800 Gossypium hirsutum HOM05D000780 ORTHO05D009033 2.8e-102 375.9 290 70.3
Gorai.013G188500 Gossypium raimondii HOM05D000780 ORTHO05D009033 4.8e-102 375.2 291 70.4
Gohir.D13G172200 Gossypium hirsutum HOM05D000780 ORTHO05D009033 6.3e-102 374.8 291 70.4
Actinidia06831 Actinidia chinensis HOM05D000780 ORTHO05D009033 1.8e-101 373.2 305 68.5
Duzib177G0863 Durio zibethinus HOM05D000780 ORTHO05D009033 2.4e-101 372.9 289 70.9
Hma1.2p1_0130F.1_g060510 Hydrangea macrophylla HOM05D000780 ORTHO05D009033 1.2e-100 370.5 301 68.1
Atru.chr2.1117 Acer truncatum HOM05D000780 ORTHO05D009033 2.6e-100 369.4 297 69.0
Glyma.20G221500 Glycine max HOM05D000780 ORTHO05D009033 5.9e-100 368.2 293 69.3
Phvul.L002032 Phaseolus vulgaris HOM05D000780 ORTHO05D009033 7.7e-100 367.9 286 71.0
VMungo0720G1285 Vigna mungo HOM05D000780 ORTHO05D009033 2.2e-99 366.3 288 70.5
Potri.019G023700 Populus trichocarpa HOM05D000780 ORTHO05D009033 8.5e-99 364.4 306 69.0
QL01p042200 Quercus lobata HOM05D000780 ORTHO05D009033 1.1e-98 364.0 309 68.9
Eucgr.H04210 Eucalyptus grandis HOM05D000780 ORTHO05D009033 1.5e-98 363.6 300 67.3
Aqoxy5G00106 Aquilegia oxysepala HOM05D000780 ORTHO05D009033 3.2e-98 362.5 294 68.0
MBI10_g26046_MAGBIO Magnolia biondii HOM05D000780 ORTHO05D009033 3.2e-98 362.5 288 69.1
Ca_09986_v3 Cicer arietinum L. HOM05D000780 ORTHO05D009033 5.5e-98 361.7 307 65.8
TWI34G1716 Tripterygium wilfordii HOM05D000780 ORTHO05D009033 8.0e-97 357.8 302 66.6
Sc24g0002520 Simmondsia chinensis HOM05D000780 ORTHO05D009033 3.4e-95 352.4 295 68.5
Manes.09G146600 Manihot esculenta HOM05D000780 ORTHO05D009033 9.8e-95 350.9 298 66.4
ATR0088G058 Amborella trichopoda HOM05D000780 ORTHO05D009033 2.8e-94 349.4 286 67.5
MSTRG.27431 Avicennia marina HOM05D000780 ORTHO05D009033 3.7e-94 349.0 302 65.9
CsaV3_1G045040 Cucumis sativus L. HOM05D000780 ORTHO05D009033 8.3e-94 347.8 303 66.0
Rhsim05G0170400 Rhododendron simsii HOM05D000780 ORTHO05D009033 1.1e-93 347.4 324 61.1
THA.LOC104821566 Tarenaya hassleriana HOM05D000780 ORTHO05D009033 1.1e-93 347.4 317 63.1
Lsat_1_v5_gn_9_46781 Lactuca sativa HOM05D000780 ORTHO05D009033 2.4e-93 346.3 290 68.3
Lalb_Chr21g0311301 Lupinus albus HOM05D000780 ORTHO05D009033 5.4e-93 345.1 312 63.5
EL10Ac4g09771 Beta vulgaris HOM05D000780 ORTHO05D009033 7.0e-93 344.7 299 64.5
Ah.06g187930 Amaranthus hybridus HOM05D000780 ORTHO05D009033 1.6e-92 343.6 303 64.7
PSO210G3904 Papaver somniferum HOM05D000780 ORTHO05D009033 1.6e-92 343.6 309 63.8
Lj5g0019051 Lotus japonicus HOM05D000780 ORTHO05D009033 2.7e-92 342.8 311 63.3
Solyc04g050470.4 Solanum lycopersicum HOM05D000780 ORTHO05D009033 2.7e-92 342.8 305 62.0
FAN14G4937 Fragaria x ananassa HOM05D000780 ORTHO05D001132 4.5e-92 342.0 317 63.1
FAN14G3828 Fragaria x ananassa HOM05D000780 ORTHO05D001132 7.7e-92 341.3 317 63.7
Potri.013G050300 Populus trichocarpa HOM05D000780 ORTHO05D009033 7.7e-92 341.3 257 72.4
FAN05G0905 Fragaria x ananassa HOM05D000780 ORTHO05D001132 1.0e-91 340.9 317 63.1
Medtr1g079763 Medicago truncatula HOM05D000780 ORTHO05D009033 2.9e-91 339.3 291 63.2
arahy.Tifrunner.gnm1.ann1.ZAXM00 Arachis hypogaea HOM05D000780 ORTHO05D009033 8.5e-91 337.8 307 64.5
AUR62006989 Chenopodium quinoa HOM05D000780 ORTHO05D009033 3.2e-90 335.9 274 68.6
arahy.Tifrunner.gnm1.ann1.09X96J Arachis hypogaea HOM05D000780 ORTHO05D009033 4.2e-90 335.5 307 64.5
Psat6g142000 Pisum sativum HOM05D000780 ORTHO05D008187 7.2e-90 334.7 308 61.7
Migut.F02052 Erythranthe guttata HOM05D000780 ORTHO05D009033 9.4e-90 334.3 301 64.8
Carub.0007s3248 Capsella rubella HOM05D000780 ORTHO05D009033 1.6e-89 333.6 306 61.4
FAN02G1432 Fragaria x ananassa HOM05D000780 ORTHO05D009033 1.6e-89 333.6 306 63.4
Hund07171 Selenicereus undatus HOM05D000780 ORTHO05D009033 3.6e-89 332.4 288 66.0
vmacro19978 Vaccinium macrocarpon HOM05D000780 ORTHO05D009033 3.0e-88 329.3 366 55.5
Nitab4.5_0003148g0030 Nicotiana tabacum HOM05D000780 ORTHO05D009033 1.5e-87 327.0 303 60.7
AL7G45990 Arabidopsis lyrata HOM05D000780 ORTHO05D009033 4.4e-87 325.5 310 61.0
Prupe.6G353000 Prunus persica HOM05D000780 ORTHO05D009033 7.5e-87 324.7 304 63.5
CARHR215730 Cardamine hirsuta HOM05D000780 ORTHO05D009033 2.2e-86 323.2 309 60.2
Thhalv10027857m.g Eutrema salsugineum HOM05D000780 ORTHO05D009033 2.2e-86 323.2 258 66.7
Sp7g05110 Schrenkiella parvula HOM05D000780 ORTHO05D009033 2.8e-86 322.8 302 59.9
BcaC02g09559 Brassica carinata HOM05D000780 ORTHO05D009033 6.3e-86 321.6 302 61.6
BolC4t25992H Brassica oleracea HOM05D000780 ORTHO05D009033 6.3e-86 321.6 302 61.6
BraA04t16719Z Brassica rapa HOM05D000780 ORTHO05D009033 6.3e-86 321.6 302 60.9
DCAR_030971 Daucus carota HOM05D000780 ORTHO05D009033 6.3e-86 321.6 299 60.9
C04p44170 Brassica napus HOM05D000780 ORTHO05D009033 1.1e-85 320.9 302 61.6
CANSAT54G0520 Cannabis sativa HOM05D000780 ORTHO05D009033 1.1e-85 320.9 305 63.6
ClCG03G011490 Citrullus lanatus HOM05D000780 ORTHO05D009033 1.1e-85 320.9 311 61.7
AT5G37360 Arabidopsis thaliana HOM05D000780 ORTHO05D009033 1.4e-85 320.5 311 59.8
SGA_v2.0_scaffold329G48830 Striga asiatica HOM05D002740 ORTHO05D003126 4.1e-85 318.9 335 57.3
A04p10530 Brassica napus HOM05D000780 ORTHO05D009033 5.4e-85 318.5 305 61.6
COL.COLO4_15539 Corchorus olitorius HOM05D000780 ORTHO05D008187 3.5e-84 315.8 213 76.5
Dinv01155 Davidia involucrata HOM05D000780 ORTHO05D009033 4.5e-84 315.5 211 78.7
ECA232G3479 Erigeron canadensis HOM05D000780 ORTHO05D009033 3.8e-83 312.4 279 62.4
Nitab4.5_0000841g0080 Nicotiana tabacum HOM05D000780 ORTHO05D009033 6.6e-83 311.6 304 58.9
SalBow1G6873 Salvia bowleyana HOM05D000780 ORTHO05D009033 6.6e-83 311.6 296 60.1
AUR62000636 Chenopodium quinoa HOM05D000780 ORTHO05D008187 3.3e-82 309.3 226 73.5
MELO3C010086.2 Cucumis melo HOM05D000780 ORTHO05D009033 1.6e-81 307.0 274 64.2
Aa31LG9G18020 Aethionema arabicum HOM05D000780 ORTHO05D009033 2.8e-81 306.2 310 58.7
Glyma.10G167600 Glycine max HOM05D000780 ORTHO05D009033 1.8e-80 303.5 277 63.5
Os02g0815400 Oryza sativa ssp. japonica HOM05D000780 ORTHO05D009033 1.2e-79 300.8 250 63.2
unitig_37.g12284 Utricularia gibba HOM05D000780 ORTHO05D009033 1.3e-78 297.4 259 63.7
SalBow1G5981 Salvia bowleyana HOM05D000780 ORTHO05D009033 3.2e-77 292.7 326 54.3
Zm00001eb258750 Zea mays HOM05D000780 ORTHO05D009033 7.8e-76 288.1 275 56.7
CSS0024577 Camellia sinensis var. sinensis HOM05D000780 ORTHO05D009033 2.9e-75 286.2 248 66.5
TPR.G10273 Trifolium pratense HOM05D000780 ORTHO05D009033 5.6e-74 282.0 323 55.4
HanXRQChr05g0145151 Helianthus annuus HOM05D000780 ORTHO05D009033 1.0e-72 277.7 286 56.6
Peaxi162Scf00077g00138 Petunia axillaris HOM05D000780 ORTHO05D009033 5.2e-72 275.4 224 67.4
Sabra13G0046100 Salix brachista HOM05D000780 ORTHO05D008187 1.5e-71 273.9 230 65.2
Haze_04472 Corylus avellana HOM05D000780 ORTHO05D009033 3.4e-71 272.7 311 59.2
Sabra19G0033700 Salix brachista HOM05D000780 ORTHO05D009033 2.2e-70 270.0 304 57.2
Cpa.g.c33516 Carica papaya HOM05D000780 ORTHO05D009033 5.0e-67 258.8 188 73.9
CiPaw.07G074400 Carya illinoinensis HOM05D000780 ORTHO05D009033 8.6e-67 258.1 246 64.2
Oeu001248.1 Olea europaea HOM05D000780 ORTHO05D008187 8.6e-67 258.1 273 56.8
Eucgr.H04100 Eucalyptus grandis HOM05D000780 ORTHO05D009033 3.7e-62 242.7 222 64.0
MD12G1251000 Malus domestica HOM05D000072 ORTHO05D009033 1.1e-53 214.5 195 64.1
AagrBONN_evm.TU.Sc2ySwM_228.3981 Anthoceros agrestis HOM05D000780 ORTHO05D009033 1.9e-53 213.8 240 48.8
Sed0013634 Sechium edule HOM05D000780 ORTHO05D009033 1.5e-50 204.1 329 45.6
SMO172G0144 Selaginella moellendorffii HOM05D000780 ORTHO05D009033 2.8e-49 199.9 213 51.6
Lj2A46G68 Lonicera japonica HOM05D000780 ORTHO05D009033 3.6e-49 199.5 149 70.5
MD12G1250900 Malus domestica HOM05D000780 ORTHO05D009033 4.2e-45 186.0 153 69.3
Pp3c18_1300 Physcomitrium patens HOM05D000780 ORTHO05D009033 9.6e-42 174.9 240 43.3
Sopen04g021250 Solanum pennellii HOM05D000780 ORTHO05D009033 6.2e-41 172.2 135 68.9
Cc09_g03030 Coffea canephora HOM05D000780 ORTHO05D009033 9.0e-40 168.3 120 75.8
CBR_g11120 Chara braunii HOM05D000780 ORTHO05D009033 3.4e-39 166.4 241 41.5
HPP92_009056 Vanilla planifolia HOM05D001254 ORTHO05D001386 1.3e-38 164.5 163 55.8
SEGI_21696 Sequoiadendron giganteum HOM05D000780 ORTHO05D009033 1.4e-37 161.0 130 64.6
FAN09G0636 Fragaria x ananassa HOM05D000780 ORTHO05D001132 2.7e-36 156.8 114 71.9
HPP92_009057 Vanilla planifolia HOM05D000780 ORTHO05D009033 3.0e-35 153.3 121 67.8
PGSC0003DMG402028709 Solanum tuberosum HOM05D000780 ORTHO05D009033 1.5e-34 151.0 120 67.5
Cc09_g03040 Coffea canephora HOM05D000780 ORTHO05D009033 6.9e-32 142.1 161 53.4
FAN11G0130 Fragaria x ananassa HOM05D000780 ORTHO05D009033 2.6e-31 140.2 230 45.2
Eucgr.H04102 Eucalyptus grandis HOM05D000780 ORTHO05D009033 2.4e-29 133.7 212 44.3
SEGI_05244 Sequoiadendron giganteum HOM05D000780 ORTHO05D009033 4.6e-28 129.4 117 59.0
FAN05G5022 Fragaria x ananassa HOM05D000780 ORTHO05D009033 4.5e-23 112.8 111 61.3
PGSC0003DMG401028709 Solanum tuberosum HOM05D000780 ORTHO05D009033 6.7e-19 99.0 108 55.6
CAN.G4.37 Capsicum annuum HOM05D000780 ORTHO05D009033 3.1e-16 90.1 63 73.0
FvH4_3g18300 Fragaria vesca HOM05D000780 ORTHO05D196851 1.3e-09 68.2 46 71.7
FAN14G1321 Fragaria x ananassa HOM05D000780 ORTHO05D009033 1.3e-09 68.2 117 41.9
FAN18G1636 Fragaria x ananassa HOM05D000780 ORTHO05D009033 1.7e-06 57.8 39 71.8
FAN21G2408 Fragaria x ananassa HOM05D000780 ORTHO05D009033 2.9e-06 57.0 61 59.0


User provided reference genes

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