Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g03003 Nelumbo nucifera HOM05D000834 ORTHO05D006956 6.3e-252 873.6 440 100.0
TAR362G0351 Trochodendron aralioides HOM05D000834 ORTHO05D006956 4.0e-198 694.9 391 87.2
PGR044G1351 Punica granatum HOM05D000834 ORTHO05D006956 4.2e-195 684.9 391 87.0
GSVIVG01028438001 Vitis vinifera HOM05D000834 ORTHO05D006956 4.2e-195 684.9 392 87.2
Manes.12G038400 Manihot esculenta HOM05D000834 ORTHO05D006956 8.7e-193 677.2 390 85.9
CiPaw.03G271600 Carya illinoinensis HOM05D000834 ORTHO05D006956 1.1e-192 676.8 393 86.5
Potri.002G255900 Populus trichocarpa HOM05D000834 ORTHO05D006956 3.3e-192 675.2 392 84.7
Potri.014G193300 Populus trichocarpa HOM05D000834 ORTHO05D006956 9.6e-192 673.7 392 85.2
Cfa002491 Carpinus fangiana HOM05D000834 ORTHO05D006956 1.6e-191 672.9 393 85.0
Manes.13G039100 Manihot esculenta HOM05D000834 ORTHO05D006956 1.6e-191 672.9 390 85.1
Haze_24714 Corylus avellana HOM05D000834 ORTHO05D006956 3.6e-191 671.8 393 85.0
Actinidia09509 Actinidia chinensis HOM05D000834 ORTHO05D006956 1.1e-190 670.2 393 84.0
MBI07_g22384_MAGBIO Magnolia biondii HOM05D000834 ORTHO05D006956 1.4e-190 669.8 391 87.0
Duzib138G0050 Durio zibethinus HOM05D000834 ORTHO05D006956 2.4e-190 669.1 393 84.0
TWI12G0869 Tripterygium wilfordii HOM05D000834 ORTHO05D006956 2.4e-190 669.1 392 83.9
Sabra02G0194500 Salix brachista HOM05D000834 ORTHO05D006956 4.0e-190 668.3 392 83.7
Lj1C74T17 Lonicera japonica HOM05D000834 ORTHO05D006956 7.6e-189 664.1 392 84.7
Hund05490 Selenicereus undatus HOM05D000834 ORTHO05D006956 7.6e-189 664.1 392 83.9
ATR0787G052 Amborella trichopoda HOM05D000834 ORTHO05D006956 2.9e-188 662.1 391 84.1
Gorai.007G150200 Gossypium raimondii HOM05D000834 ORTHO05D006956 6.4e-188 661.0 393 83.0
Thecc.01G249300 Theobroma cacao HOM05D000834 ORTHO05D006956 6.4e-188 661.0 393 83.0
arahy.Tifrunner.gnm1.ann1.WYWU3M Arachis hypogaea HOM05D000834 ORTHO05D006956 1.1e-187 660.2 394 83.2
Phvul.007G153700 Phaseolus vulgaris HOM05D000834 ORTHO05D006956 1.9e-187 659.4 392 83.4
Prupe.8G214700 Prunus persica HOM05D000834 ORTHO05D006956 2.4e-187 659.1 392 83.2
PSO832G2974 Papaver somniferum HOM05D000834 ORTHO05D006956 3.2e-187 658.7 393 82.4
Glyma.13G127400 Glycine max HOM05D000834 ORTHO05D006956 4.2e-187 658.3 392 83.7
Gohir.D11G140000 Gossypium hirsutum HOM05D000834 ORTHO05D006956 1.2e-186 656.8 393 82.7
arahy.Tifrunner.gnm1.ann1.G250MW Arachis hypogaea HOM05D000834 ORTHO05D006956 1.6e-186 656.4 392 83.2
CDE09G1390 Ceratophyllum demersum HOM05D000834 ORTHO05D006956 1.6e-186 656.4 388 84.8
PSO764G0197 Papaver somniferum HOM05D000834 ORTHO05D006956 1.6e-186 656.4 393 81.7
VMungo0720G2048 Vigna mungo HOM05D000834 ORTHO05D006956 3.5e-186 655.2 392 82.7
MD10G1175400 Malus domestica HOM05D000834 ORTHO05D006956 1.0e-185 653.7 392 81.6
Gohir.A11G133900 Gossypium hirsutum HOM05D000834 ORTHO05D006956 2.3e-185 652.5 393 81.9
QL09p041638 Quercus lobata HOM05D000834 ORTHO05D006956 6.6e-185 651.0 396 82.1
MD05G1187700 Malus domestica HOM05D000834 ORTHO05D006956 8.7e-185 650.6 392 81.4
ClCG06G001380 Citrullus lanatus HOM05D000834 ORTHO05D006956 1.1e-184 650.2 393 83.2
CSS0050145 Camellia sinensis var. sinensis HOM05D000834 ORTHO05D006956 2.5e-184 649.0 392 82.1
CSS0037788 Camellia sinensis var. sinensis HOM05D000834 ORTHO05D006956 4.3e-184 648.3 397 81.4
Sc05g0002850 Simmondsia chinensis HOM05D000834 ORTHO05D006956 4.3e-184 648.3 392 81.6
CsaV3_6G007320 Cucumis sativus L. HOM05D000834 ORTHO05D006956 1.3e-183 646.7 394 82.0
CANSAT01G0496 Cannabis sativa HOM05D000834 ORTHO05D006956 2.1e-183 646.0 393 80.4
CANSAT01G1591 Cannabis sativa HOM05D000834 ORTHO05D006956 2.1e-183 646.0 393 80.4
COL.COLO4_02902 Corchorus olitorius HOM05D000834 ORTHO05D006956 4.8e-183 644.8 391 81.6
Lj5g0006902 Lotus japonicus HOM05D000834 ORTHO05D006956 4.8e-183 644.8 392 82.9
TPR.G5902 Trifolium pratense HOM05D000834 ORTHO05D006956 8.1e-183 644.0 392 81.6
Atru.chr5.1869 Acer truncatum HOM05D000834 ORTHO05D006956 5.3e-182 641.3 393 81.2
RcHm_v2.0_Chr6g0286481 Rosa chinensis HOM05D000834 ORTHO05D006956 2.0e-181 639.4 392 81.6
Rhsim01G0259900 Rhododendron simsii HOM05D000834 ORTHO05D006956 3.4e-181 638.6 416 77.2
FvH4_2g20370 Fragaria vesca HOM05D000834 ORTHO05D006956 4.5e-181 638.3 392 81.6
FAN15G3585 Fragaria x ananassa HOM05D000834 ORTHO05D006956 4.5e-181 638.3 392 81.6
Medtr1g069455 Medicago truncatula HOM05D000834 ORTHO05D006956 4.5e-181 638.3 392 80.6
Aqoxy5G00122 Aquilegia oxysepala HOM05D000834 ORTHO05D006956 5.8e-181 637.9 393 79.6
Oeu052085.1 Olea europaea HOM05D000834 ORTHO05D006956 7.6e-181 637.5 390 81.0
THA.LOC104820067 Tarenaya hassleriana HOM05D000834 ORTHO05D006956 7.6e-181 637.5 395 80.5
SGA_v2.0_scaffold1G00665 Striga asiatica HOM05D000121 ORTHO05D000102 2.2e-180 636.0 423 75.9
Sed0018887 Sechium edule HOM05D000834 ORTHO05D006956 2.9e-180 635.6 393 81.4
FAN24G3261 Fragaria x ananassa HOM05D000834 ORTHO05D006956 4.9e-180 634.8 393 81.2
Ciclev10020464m.g Citrus clementina HOM05D000834 ORTHO05D006956 1.1e-179 633.6 393 78.9
AUR62025434 Chenopodium quinoa HOM05D000834 ORTHO05D006956 1.4e-179 633.3 392 80.4
MSTRG.18357 Avicennia marina HOM05D000834 ORTHO05D006956 3.2e-179 632.1 393 79.6
Cpa.g.sc87.39 Carica papaya HOM05D000834 ORTHO05D006956 4.2e-179 631.7 424 75.5
Lalb_Chr02g0152761 Lupinus albus HOM05D000834 ORTHO05D006956 4.2e-179 631.7 393 80.7
THA.LOC104814534 Tarenaya hassleriana HOM05D000834 ORTHO05D006956 1.2e-178 630.2 395 79.5
Psat6g062480 Pisum sativum HOM05D000834 ORTHO05D006956 2.7e-178 629.0 392 79.6
HPP92_020769 Vanilla planifolia HOM05D000834 ORTHO05D006956 2.7e-178 629.0 393 79.1
Migut.D00483 Erythranthe guttata HOM05D000834 ORTHO05D006956 3.5e-178 628.6 393 78.9
Eucgr.K01422 Eucalyptus grandis HOM05D000834 ORTHO05D006956 3.5e-178 628.6 392 80.9
HanXRQChr01g0014941 Helianthus annuus HOM05D000834 ORTHO05D006956 3.5e-178 628.6 392 78.6
Sp3g33600 Schrenkiella parvula HOM05D000834 ORTHO05D006956 3.5e-178 628.6 395 78.7
BcaC04g22796 Brassica carinata HOM05D000834 ORTHO05D006956 6.0e-178 627.9 396 78.3
BolC9t54430H Brassica oleracea HOM05D000834 ORTHO05D006956 6.0e-178 627.9 396 78.3
BcaB08g34904 Brassica carinata HOM05D000834 ORTHO05D006956 7.9e-178 627.5 395 78.7
BraA09t36931Z Brassica rapa HOM05D000834 ORTHO05D006956 7.9e-178 627.5 423 74.7
BraA09t41279Z Brassica rapa HOM05D000834 ORTHO05D006956 7.9e-178 627.5 395 78.5
BcaB07g31592 Brassica carinata HOM05D000834 ORTHO05D006956 1.0e-177 627.1 396 78.3
BraA07t27827Z Brassica rapa HOM05D000834 ORTHO05D006956 1.0e-177 627.1 395 78.5
Lsat_1_v5_gn_5_181100 Lactuca sativa HOM05D000834 ORTHO05D006956 1.0e-177 627.1 392 78.8
CARHR110880 Cardamine hirsuta HOM05D000834 ORTHO05D006956 1.8e-177 626.3 395 78.0
AT2G20360 Arabidopsis thaliana HOM05D000834 ORTHO05D006956 3.0e-177 625.5 395 78.0
BcaC06g36723 Brassica carinata HOM05D000834 ORTHO05D006956 3.0e-177 625.5 396 78.0
MELO3C022394.2 Cucumis melo HOM05D000834 ORTHO05D006956 3.0e-177 625.5 410 77.8
AL3G53320 Arabidopsis lyrata HOM05D000834 ORTHO05D006956 3.9e-177 625.2 395 77.7
A07p00360 Brassica napus HOM05D000834 ORTHO05D000909 3.9e-177 625.2 394 78.4
BcaC07g41219 Brassica carinata HOM05D000834 ORTHO05D006956 3.3e-176 622.1 396 77.8
BolC7t40517H Brassica oleracea HOM05D000834 ORTHO05D006956 4.3e-176 621.7 394 77.9
Carub.0003s3474 Capsella rubella HOM05D000834 ORTHO05D006956 4.3e-176 621.7 395 77.7
A09p12840 Brassica napus HOM05D000834 ORTHO05D006956 9.6e-176 620.5 390 78.2
C07p00720 Brassica napus HOM05D000834 ORTHO05D006956 1.3e-175 620.2 394 77.9
BolC8t51785H Brassica oleracea HOM05D000834 ORTHO05D006956 1.3e-175 620.2 395 77.7
Thhalv10002002m.g Eutrema salsugineum HOM05D000834 ORTHO05D006956 3.7e-175 618.6 395 77.5
A09p58940 Brassica napus HOM05D000834 ORTHO05D006956 8.1e-175 617.5 407 75.2
C08p42260 Brassica napus HOM05D000834 ORTHO05D006956 2.4e-174 615.9 407 74.9
Ah.08g213640 Amaranthus hybridus HOM05D000834 ORTHO05D006956 4.0e-174 615.1 363 84.8
Cc01_g17740 Coffea canephora HOM05D000834 ORTHO05D006956 4.0e-174 615.1 411 75.2
Aa31LG8G17350 Aethionema arabicum HOM05D000834 ORTHO05D006956 1.5e-173 613.2 395 77.2
C09p15230 Brassica napus HOM05D000834 ORTHO05D006956 1.5e-173 613.2 389 77.6
Sopen09g025590 Solanum pennellii HOM05D000834 ORTHO05D006956 1.5e-173 613.2 396 77.3
Lalb_Chr06g0170741 Lupinus albus HOM05D000834 ORTHO05D006956 2.0e-173 612.8 393 78.1
CSS0005533 Camellia sinensis var. sinensis HOM05D000834 ORTHO05D006956 3.4e-173 612.1 451 72.3
Solyc09g064450.3 Solanum lycopersicum HOM05D000834 ORTHO05D006956 7.6e-173 610.9 396 77.0
DCAR_004694 Daucus carota HOM05D000834 ORTHO05D006956 1.1e-171 607.1 392 76.5
Os02g0816800 Oryza sativa ssp. japonica HOM05D000834 ORTHO05D006956 5.5e-171 604.7 359 82.5
unitig_22.g6307 Utricularia gibba HOM05D000834 ORTHO05D006956 1.8e-169 599.7 394 77.9
Nitab4.5_0002435g0060 Nicotiana tabacum HOM05D000834 ORTHO05D006956 8.7e-169 597.4 435 70.1
Nitab4.5_0000385g0020 Nicotiana tabacum HOM05D000834 ORTHO05D006956 1.5e-168 596.7 440 69.5
Peaxi162Scf00043g00251 Petunia axillaris HOM05D000834 ORTHO05D006956 5.6e-168 594.7 396 75.5
SalBow4G1359 Salvia bowleyana HOM05D000834 ORTHO05D006956 1.1e-166 590.5 490 63.9
Ca_09644_v3 Cicer arietinum L. HOM05D000834 ORTHO05D006956 1.8e-166 589.7 409 74.3
SEGI_11456 Sequoiadendron giganteum HOM05D000834 ORTHO05D006956 2.0e-165 586.3 386 73.6
BcaB03g16828 Brassica carinata HOM05D000834 ORTHO05D006956 6.5e-164 581.3 396 74.7
vmacro14792 Vaccinium macrocarpon HOM05D000834 ORTHO05D006956 2.1e-162 576.2 545 58.5
FAN27G0744 Fragaria x ananassa HOM05D000834 ORTHO05D006956 4.1e-158 562.0 353 81.3
CDE02G1088 Ceratophyllum demersum HOM05D000834 ORTHO05D006956 2.7e-154 549.3 326 84.7
AUR62008805 Chenopodium quinoa HOM05D000834 ORTHO05D006956 1.0e-145 520.8 305 82.6
Dinv19263 Davidia involucrata HOM05D000834 ORTHO05D006956 5.0e-140 501.9 284 84.9
CAN.G536.3 Capsicum annuum HOM05D000834 ORTHO05D006956 4.7e-138 495.4 318 79.6
ECA248G1156 Erigeron canadensis HOM05D000121 ORTHO05D000102 1.6e-133 480.3 343 71.1
SalBow6G5988 Salvia bowleyana HOM05D000834 ORTHO05D006956 6.1e-122 441.8 355 68.7
AagrBONN_evm.TU.Sc2ySwM_368.182 Anthoceros agrestis HOM05D000834 ORTHO05D006956 1.7e-119 433.7 391 56.3
Mapoly0051s0097 Marchantia polymorpha HOM05D000834 ORTHO05D006956 9.1e-118 427.9 378 55.3
Zm00001eb258880 Zea mays HOM05D000834 ORTHO05D006956 4.5e-117 425.6 281 77.6
Pp3c14_9070 Physcomitrium patens HOM05D000834 ORTHO05D006956 1.0e-116 424.5 353 57.2
CBR_g12802 Chara braunii HOM05D000834 ORTHO05D006956 3.4e-112 409.5 338 57.4
SMO119G0351 Selaginella moellendorffii HOM05D000834 ORTHO05D006956 1.4e-102 377.5 349 53.9
Actinidia23703 Actinidia chinensis HOM05D000834 ORTHO05D006956 1.1e-99 367.9 236 81.8
MD15G1374200 Malus domestica HOM05D000834 ORTHO05D006956 5.4e-86 322.4 218 72.9
Pp3c1_35920 Physcomitrium patens HOM05D000834 ORTHO05D006956 7.8e-85 318.5 282 52.8
MCO13G055 Micromonas commoda HOM05D000834 ORTHO05D006956 2.2e-79 300.4 334 47.3
PRCOL_00005891 Prasinoderma coloniale HOM05D000834 ORTHO05D006956 1.7e-68 264.2 340 41.5
Dinv43064 Davidia involucrata HOM05D000834 ORTHO05D006956 3.8e-63 246.5 231 58.0
Cre10.g434450 Chlamydomonas reinhardtii HOM05D000834 ORTHO05D006956 4.2e-62 243.0 354 40.1
SHI26743 Sapria himalayana HOM05D000834 ORTHO05D006956 1.1e-59 235.0 205 64.9
Oeu015439.4 Olea europaea HOM05D000121 ORTHO05D000102 4.8e-58 229.6 287 50.2
SEGI_20632 Sequoiadendron giganteum HOM05D000834 ORTHO05D006956 6.2e-58 229.2 173 71.1
Gohir.A13G077301 Gossypium hirsutum HOM05D000834 ORTHO05D006956 1.0e-44 185.3 99 90.9
Gohir.A12G044900 Gossypium hirsutum HOM05D000751 ORTHO05D000889 2.4e-33 147.5 80 87.5
Gohir.A01G059200 Gossypium hirsutum HOM05D000751 ORTHO05D000889 3.1e-33 147.1 82 86.6
CDE02G0223 Ceratophyllum demersum HOM05D000834 ORTHO05D006956 4.5e-32 143.3 82 85.4
vmacro08769 Vaccinium macrocarpon HOM05D000834 ORTHO05D006956 2.1e-29 134.4 132 58.3
vmacro08768 Vaccinium macrocarpon HOM05D000834 ORTHO05D426596 8.5e-23 112.5 65 81.5
SHI26740 Sapria himalayana HOM05D000834 ORTHO05D006956 4.2e-22 110.2 105 54.3
BcaB02g11316 Brassica carinata HOM05D000834 ORTHO05D000693 1.1e-17 95.5 86 61.6
Lsat_1_v5_gn_8_148040 Lactuca sativa HOM05D000834 ORTHO05D006956 7.5e-11 72.8 53 64.2
Dinv43063 Davidia involucrata HOM05D000834 ORTHO05D183077 1.7e-07 61.6 34 85.3
CiPaw.05G147100 Carya illinoinensis HOM05D000834 ORTHO05D006956 2.2e-07 61.2 42 73.8
A10p20920 Brassica napus HOM05D006883 ORTHO05D008624 2.9e-07 60.8 317 23.0
CARHR194360 Cardamine hirsuta HOM05D006883 ORTHO05D008624 3.8e-07 60.5 343 22.4
Lsat_1_v5_gn_7_90061 Lactuca sativa HOM05D000834 ORTHO05D001119 6.5e-07 59.7 37 70.3
C09p57810 Brassica napus HOM05D006883 ORTHO05D008624 1.1e-06 58.9 260 23.8
Lalb_Chr15g0087031 Lupinus albus HOM05D006883 ORTHO05D008624 1.9e-06 58.2 277 24.5
Sc25g0004770 Simmondsia chinensis HOM05D006883 ORTHO05D008624 5.5e-06 56.6 281 22.8
BcaB08g36654 Brassica carinata HOM05D006883 ORTHO05D008624 9.4e-06 55.8 262 24.4


User provided reference genes

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