Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g02984 Nelumbo nucifera HOM05D001786 ORTHO05D001743 1.7e-54 215.7 104 100.0
Nn5g29629 Nelumbo nucifera HOM05D001786 ORTHO05D001743 1.6e-25 119.4 90 68.9
Nn3g17038 Nelumbo nucifera HOM05D001786 ORTHO05D001743 7.4e-10 67.4 60 61.7
Manes.06G099900 Manihot esculenta HOM05D001786 ORTHO05D001743 2.2e-09 65.9 62 59.7
Sed0022631 Sechium edule HOM05D001786 ORTHO05D001743 2.8e-09 65.5 97 45.4
PGSC0003DMG400006903 Solanum tuberosum HOM05D001786 ORTHO05D001743 2.8e-09 65.5 62 56.5
Cfa019061 Carpinus fangiana HOM05D001786 ORTHO05D001743 3.7e-09 65.1 78 50.0
ATR0712G113 Amborella trichopoda HOM05D001786 ORTHO05D001743 6.3e-09 64.3 78 48.7
Cpa.g.sc35.29 Carica papaya HOM05D001786 ORTHO05D001743 6.3e-09 64.3 62 58.1
ClCG01G014150 Citrullus lanatus HOM05D001786 ORTHO05D001743 6.3e-09 64.3 78 50.0
COL.COLO4_21449 Corchorus olitorius HOM05D001786 ORTHO05D001743 6.3e-09 64.3 62 58.1
Manes.12G015600 Manihot esculenta HOM05D001786 ORTHO05D001743 8.2e-09 63.9 76 52.6
Peaxi162Scf00059g00015 Petunia axillaris HOM05D001786 ORTHO05D001743 8.2e-09 63.9 62 56.5
Sed0027667 Sechium edule HOM05D001786 ORTHO05D001743 8.2e-09 63.9 78 50.0
Nitab4.5_0001727g0100 Nicotiana tabacum HOM05D001786 ORTHO05D001743 1.1e-08 63.5 62 56.5
Nitab4.5_0003431g0030 Nicotiana tabacum HOM05D001786 ORTHO05D001743 1.1e-08 63.5 62 56.5
CsaV3_1G008160 Cucumis sativus L. HOM05D001786 ORTHO05D001743 1.4e-08 63.2 78 48.7
Duzib205G2033 Durio zibethinus HOM05D001786 ORTHO05D001743 1.4e-08 63.2 62 56.5
Sc04g0002170 Simmondsia chinensis HOM05D001786 ORTHO05D001743 1.4e-08 63.2 62 56.5
Haze_07430 Corylus avellana HOM05D001786 ORTHO05D001743 1.8e-08 62.8 78 48.7
MELO3C002233.2 Cucumis melo HOM05D001786 ORTHO05D001743 1.8e-08 62.8 78 48.7
Duzib068G0430 Durio zibethinus HOM05D001786 ORTHO05D001743 1.8e-08 62.8 62 56.5
Oeu060598.1 Olea europaea HOM05D001786 ORTHO05D001743 1.8e-08 62.8 62 56.5
PGR083G2603 Punica granatum HOM05D001786 ORTHO05D001743 1.8e-08 62.8 62 56.5
Manes.13G015100 Manihot esculenta HOM05D001786 ORTHO05D001743 2.4e-08 62.4 76 51.3
Solyc02g067580.3 Solanum lycopersicum HOM05D001786 ORTHO05D001743 2.4e-08 62.4 62 53.2
Sopen02g016710 Solanum pennellii HOM05D001786 ORTHO05D001743 2.4e-08 62.4 62 53.2
Ah.16g102240 Amaranthus hybridus HOM05D001786 ORTHO05D001743 4.1e-08 61.6 62 53.2
Nitab4.5_0004905g0080 Nicotiana tabacum HOM05D001786 ORTHO05D001743 4.1e-08 61.6 81 45.7
Nitab4.5_0010004g0030 Nicotiana tabacum HOM05D001786 ORTHO05D001743 4.1e-08 61.6 81 45.7
Peaxi162Scf00129g00731 Petunia axillaris HOM05D001786 ORTHO05D001743 4.1e-08 61.6 78 48.7
CAN.G206.70 Capsicum annuum HOM05D001786 ORTHO05D001743 5.3e-08 61.2 78 47.4
AUR62014571 Chenopodium quinoa HOM05D001786 ORTHO05D001743 5.3e-08 61.2 62 53.2
Ca_16214_v3 Cicer arietinum L. HOM05D001786 ORTHO05D001743 5.3e-08 61.2 62 54.8
Glyma.04G178100 Glycine max HOM05D001786 ORTHO05D001743 5.3e-08 61.2 62 54.8
Glyma.06G186900 Glycine max HOM05D001786 ORTHO05D001743 5.3e-08 61.2 62 54.8
Aqoxy3G03143 Aquilegia oxysepala HOM05D001786 ORTHO05D001743 6.9e-08 60.8 62 56.5
CAN.G1128.15 Capsicum annuum HOM05D001786 ORTHO05D001743 6.9e-08 60.8 62 53.2
Cc04_g16240 Coffea canephora HOM05D001786 ORTHO05D001743 6.9e-08 60.8 62 53.2
Dinv13131 Davidia involucrata HOM05D001786 ORTHO05D001743 6.9e-08 60.8 62 53.2
Gohir.A07G040500 Gossypium hirsutum HOM05D001786 ORTHO05D001743 6.9e-08 60.8 62 54.8
Gohir.D07G044700 Gossypium hirsutum HOM05D001786 ORTHO05D001743 6.9e-08 60.8 62 54.8
Gorai.001G047700 Gossypium raimondii HOM05D001786 ORTHO05D001743 6.9e-08 60.8 62 54.8
Manes.14G071100 Manihot esculenta HOM05D001786 ORTHO05D001743 6.9e-08 60.8 62 56.5
Medtr3g078590 Medicago truncatula HOM05D001786 ORTHO05D001743 6.9e-08 60.8 76 48.7
Ah.10g037320 Amaranthus hybridus HOM05D001786 ORTHO05D001743 9.1e-08 60.5 62 51.6
Cfa009308 Carpinus fangiana HOM05D001786 ORTHO05D001743 9.1e-08 60.5 78 46.2
AUR62039391 Chenopodium quinoa HOM05D001786 ORTHO05D001743 9.1e-08 60.5 62 53.2
Phvul.009G182600 Phaseolus vulgaris HOM05D001786 ORTHO05D001743 9.1e-08 60.5 62 53.2
Sp5g22650 Schrenkiella parvula HOM05D001786 ORTHO05D001743 9.1e-08 60.5 75 50.7
Hund13753 Selenicereus undatus HOM05D001786 ORTHO05D001743 9.1e-08 60.5 62 53.2
Atru.chr11.2235 Acer truncatum HOM05D001786 ORTHO05D001743 1.2e-07 60.1 76 47.4
Atru.chr9.2392 Acer truncatum HOM05D001786 ORTHO05D001743 1.2e-07 60.1 62 53.2
CiPaw.11G032800 Carya illinoinensis HOM05D001786 ORTHO05D001743 1.2e-07 60.1 62 54.8
Cc07_g02750 Coffea canephora HOM05D001786 ORTHO05D001743 1.2e-07 60.1 62 54.8
HanXRQChr16g0523911 Helianthus annuus HOM05D001786 ORTHO05D001743 1.2e-07 60.1 62 53.2
Potri.008G179401 Populus trichocarpa HOM05D001786 ORTHO05D001743 1.2e-07 60.1 76 48.7
QL10p013680 Quercus lobata HOM05D001786 ORTHO05D001743 1.2e-07 60.1 62 51.6
Sabra08G0137000 Salix brachista HOM05D001786 ORTHO05D001743 1.2e-07 60.1 76 48.7
THA.LOC104821467 Tarenaya hassleriana HOM05D001786 ORTHO05D001743 1.2e-07 60.1 62 53.2
Actinidia33980 Actinidia chinensis HOM05D001786 ORTHO05D001743 1.5e-07 59.7 62 51.6
CANSAT80G2372 Cannabis sativa HOM05D001786 ORTHO05D001743 1.5e-07 59.7 62 53.2
Dinv33681 Davidia involucrata HOM05D001786 ORTHO05D001743 1.5e-07 59.7 62 53.2
Migut.H00176 Erythranthe guttata HOM05D001786 ORTHO05D001743 1.5e-07 59.7 62 53.2
Thhalv10019446m.g Eutrema salsugineum HOM05D001786 ORTHO05D001743 1.5e-07 59.7 75 49.3
HanXRQChr09g0265771 Helianthus annuus HOM05D001786 ORTHO05D001743 1.5e-07 59.7 62 51.6
Lsat_1_v5_gn_4_180741 Lactuca sativa HOM05D001786 ORTHO05D001743 1.5e-07 59.7 81 45.7
Solyc02g087330.3 Solanum lycopersicum HOM05D001786 ORTHO05D001743 1.5e-07 59.7 62 53.2
Sopen02g032080 Solanum pennellii HOM05D001786 ORTHO05D001743 1.5e-07 59.7 62 53.2
PGSC0003DMG400001395 Solanum tuberosum HOM05D001786 ORTHO05D001743 1.5e-07 59.7 62 53.2
CSS0006868 Camellia sinensis var. sinensis HOM05D001786 ORTHO05D001743 2.0e-07 59.3 62 53.2
CSS0014513 Camellia sinensis var. sinensis HOM05D001786 ORTHO05D001743 2.0e-07 59.3 62 53.2
CiPaw.06G099200 Carya illinoinensis HOM05D001786 ORTHO05D001743 2.0e-07 59.3 62 54.8
CDE07G1360 Ceratophyllum demersum HOM05D001786 ORTHO05D001743 2.0e-07 59.3 62 50.0
Ciclev10023087m.g Citrus clementina HOM05D001786 ORTHO05D001743 2.0e-07 59.3 67 52.2
DCAR_013967 Daucus carota HOM05D001786 ORTHO05D001743 2.0e-07 59.3 62 51.6
ECA232G3308 Erigeron canadensis HOM05D001786 ORTHO05D001743 2.0e-07 59.3 62 51.6
Hund16098 Selenicereus undatus HOM05D001786 ORTHO05D001743 2.0e-07 59.3 62 53.2
arahy.Tifrunner.gnm1.ann1.A6MJL2 Arachis hypogaea HOM05D001786 ORTHO05D001743 2.6e-07 58.9 62 51.6
arahy.Tifrunner.gnm1.ann1.LAL591 Arachis hypogaea HOM05D001786 ORTHO05D001743 2.6e-07 58.9 62 51.6
EL10Ac5g10848 Beta vulgaris HOM05D001786 ORTHO05D001743 2.6e-07 58.9 62 53.2
HanXRQChr12g0385621 Helianthus annuus HOM05D001786 ORTHO05D001743 2.6e-07 58.9 62 51.6
RhsimUnG0168800 Rhododendron simsii HOM05D001786 ORTHO05D001743 2.6e-07 58.9 62 53.2
CDE04G3501 Ceratophyllum demersum HOM05D001786 ORTHO05D001743 3.4e-07 58.5 62 48.4
Eucgr.B00320 Eucalyptus grandis HOM05D001786 ORTHO05D001743 3.4e-07 58.5 62 51.6
Eucgr.B00324 Eucalyptus grandis HOM05D001786 ORTHO05D001743 3.4e-07 58.5 62 51.6
MD13G1111400 Malus domestica HOM05D001786 ORTHO05D001743 3.4e-07 58.5 78 46.2
Oeu003307.1 Olea europaea HOM05D001786 ORTHO05D001743 3.4e-07 58.5 62 53.2
PSO013G0264 Papaver somniferum HOM05D001786 ORTHO05D001743 3.4e-07 58.5 67 49.3
PSO832G2026 Papaver somniferum HOM05D001786 ORTHO05D001743 3.4e-07 58.5 67 49.3
GSVIVG01007833001 Vitis vinifera HOM05D001786 ORTHO05D001743 3.4e-07 58.5 62 51.6
GSVIVG01010327001 Vitis vinifera HOM05D001786 ORTHO05D001743 3.4e-07 58.5 62 53.2
Actinidia25753 Actinidia chinensis HOM05D001786 ORTHO05D001743 4.5e-07 58.2 75 48.0
arahy.Tifrunner.gnm1.ann1.5BI7K5 Arachis hypogaea HOM05D001786 ORTHO05D001743 4.5e-07 58.2 62 54.8
arahy.Tifrunner.gnm1.ann1.K0ABFQ Arachis hypogaea HOM05D001786 ORTHO05D001743 4.5e-07 58.2 62 54.8
CDE06G1669 Ceratophyllum demersum HOM05D001786 ORTHO05D001743 4.5e-07 58.2 59 52.5
Eucgr.H04674 Eucalyptus grandis HOM05D001786 ORTHO05D001743 4.5e-07 58.2 78 44.9
THA.LOC104818223 Tarenaya hassleriana HOM05D001786 ORTHO05D001743 4.5e-07 58.2 62 51.6
ATR0686G236 Amborella trichopoda HOM05D001786 ORTHO05D001743 5.9e-07 57.8 76 43.4
Aqoxy5G03532 Aquilegia oxysepala HOM05D001786 ORTHO05D001743 5.9e-07 57.8 75 44.0
CDE04G0769 Ceratophyllum demersum HOM05D001786 ORTHO05D001743 5.9e-07 57.8 62 51.6
CDE06G0033 Ceratophyllum demersum HOM05D001786 ORTHO05D001743 5.9e-07 57.8 62 51.6
CDE06G1198 Ceratophyllum demersum HOM05D001786 ORTHO05D001743 5.9e-07 57.8 62 51.6
SalBow3G1746 Salvia bowleyana HOM05D001786 ORTHO05D001743 5.9e-07 57.8 75 46.7
THA.LOC104825524 Tarenaya hassleriana HOM05D001786 ORTHO05D001743 5.9e-07 57.8 75 48.0
Glyma.18G009800 Glycine max HOM05D001786 ORTHO05D001743 7.7e-07 57.4 62 51.6
Lalb_Chr08g0236191 Lupinus albus HOM05D001786 ORTHO05D001743 7.7e-07 57.4 62 51.6
Potri.012G074900 Populus trichocarpa HOM05D001786 ORTHO05D001743 7.7e-07 57.4 62 51.6
Rhsim08G0062700 Rhododendron simsii HOM05D001786 ORTHO05D001743 7.7e-07 57.4 78 44.9
Sopen03g032780 Solanum pennellii HOM05D001786 ORTHO05D001743 7.7e-07 57.4 76 43.4
Thecc.03G002800 Theobroma cacao HOM05D001786 ORTHO05D001743 7.7e-07 57.4 62 51.6
AUR62008293 Chenopodium quinoa HOM05D001786 ORTHO05D001743 1.0e-06 57.0 59 52.5
Ca_16489_v3 Cicer arietinum L. HOM05D001786 ORTHO05D001743 1.0e-06 57.0 64 51.6
Lalb_Chr11g0070541 Lupinus albus HOM05D001786 ORTHO05D001743 1.0e-06 57.0 62 50.0
TPR.G6829 Trifolium pratense HOM05D001786 ORTHO05D001743 1.0e-06 57.0 62 51.6
Aa31LG4G16740 Aethionema arabicum HOM05D001786 ORTHO05D001743 1.3e-06 56.6 62 50.0
CAN.G853.28 Capsicum annuum HOM05D001786 ORTHO05D001743 1.3e-06 56.6 76 43.4
Gohir.A03G129400 Gossypium hirsutum HOM05D001786 ORTHO05D001743 1.3e-06 56.6 62 51.6
Gohir.D02G153100 Gossypium hirsutum HOM05D001786 ORTHO05D001743 1.3e-06 56.6 62 51.6
Gorai.005G172200 Gossypium raimondii HOM05D001786 ORTHO05D001743 1.3e-06 56.6 62 51.6
MD16G1111000 Malus domestica HOM05D001786 ORTHO05D001743 1.3e-06 56.6 78 46.2
Nn4g22424 Nelumbo nucifera HOM05D001786 ORTHO05D001743 1.3e-06 56.6 78 43.6
SEGI_41521 Sequoiadendron giganteum HOM05D001786 ORTHO05D001743 1.3e-06 56.6 78 41.0
TAR629G0553 Trochodendron aralioides HOM05D001786 ORTHO05D001743 1.3e-06 56.6 62 51.6
Glyma.11G247500 Glycine max HOM05D001786 ORTHO05D001743 1.7e-06 56.2 62 50.0
Phvul.001G258900 Phaseolus vulgaris HOM05D001786 ORTHO05D001743 1.7e-06 56.2 62 51.6
Sabra10G0049700 Salix brachista HOM05D001786 ORTHO05D001743 1.7e-06 56.2 62 50.0
AUR62031055 Chenopodium quinoa HOM05D001786 ORTHO05D001743 2.2e-06 55.8 62 48.4
HPP92_003064 Vanilla planifolia HOM05D001786 ORTHO05D001743 2.2e-06 55.8 62 48.4
FAN08G0927 Fragaria x ananassa HOM05D001786 ORTHO05D001743 2.9e-06 55.5 62 50.0
QL03p055049 Quercus lobata HOM05D001786 ORTHO05D001743 2.9e-06 55.5 62 48.4
Solyc03g113730.3 Solanum lycopersicum HOM05D001786 ORTHO05D001743 2.9e-06 55.5 76 42.1
unitig_21.g20452 Utricularia gibba HOM05D001786 ORTHO05D001743 2.9e-06 55.5 78 44.9
unitig_744.g24396 Utricularia gibba HOM05D001786 ORTHO05D001743 2.9e-06 55.5 78 44.9
AL5G27470 Arabidopsis lyrata HOM05D001786 ORTHO05D001743 3.8e-06 55.1 76 44.7
RcHm_v2.0_Chr4g0431281 Rosa chinensis HOM05D001786 ORTHO05D001743 3.8e-06 55.1 76 46.1
RcHm_v2.0_Chr7g0179831 Rosa chinensis HOM05D001786 ORTHO05D001743 3.8e-06 55.1 62 48.4
PGSC0003DMG400024468 Solanum tuberosum HOM05D001786 ORTHO05D001743 3.8e-06 55.1 76 42.1
FAN13G2442 Fragaria x ananassa HOM05D001786 ORTHO05D001743 5.0e-06 54.7 62 48.4
Potri.010G055300 Populus trichocarpa HOM05D001786 ORTHO05D001743 5.0e-06 54.7 75 45.3
Prupe.1G234100 Prunus persica HOM05D001786 ORTHO05D001743 5.0e-06 54.7 76 43.4
PGR119G2393 Punica granatum HOM05D001786 ORTHO05D001743 5.0e-06 54.7 62 48.4
COL.COLO4_23611 Corchorus olitorius HOM05D001786 ORTHO05D001743 6.5e-06 54.3 78 41.0
Thecc.02G273400 Theobroma cacao HOM05D001786 ORTHO05D001743 6.5e-06 54.3 100 37.0
CANSAT01G1258 Cannabis sativa HOM05D001786 ORTHO05D001743 8.5e-06 53.9 59 50.8
CARHR156860 Cardamine hirsuta HOM05D001786 ORTHO05D001743 8.5e-06 53.9 62 48.4
CsaV3_2G025290 Cucumis sativus L. HOM05D001786 ORTHO05D001743 8.5e-06 53.9 62 48.4
FAN07G0552 Fragaria x ananassa HOM05D001786 ORTHO05D001743 8.5e-06 53.9 75 45.3
FAN22G1117 Fragaria x ananassa HOM05D001786 ORTHO05D001743 8.5e-06 53.9 75 45.3
Lalb_Chr13g0294151 Lupinus albus HOM05D001786 ORTHO05D001743 8.5e-06 53.9 62 48.4
SalBow1G3088 Salvia bowleyana HOM05D001786 ORTHO05D001743 8.5e-06 53.9 62 48.4
TWI36G0489 Tripterygium wilfordii HOM05D001786 ORTHO05D001743 8.5e-06 53.9 75 45.3
TWI75G1133 Tripterygium wilfordii HOM05D001786 ORTHO05D001743 8.5e-06 53.9 62 48.4


User provided reference genes

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