Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g02944 Nelumbo nucifera HOM05D004185 ORTHO05D005294 5.2e-145 517.7 261 100.0
MBI07_g13955_MAGBIO Magnolia biondii HOM05D004185 ORTHO05D005294 9.9e-104 380.6 257 73.9
CANSAT80G1231 Cannabis sativa HOM05D004185 ORTHO05D005294 2.9e-103 379.0 234 80.3
Atru.chr3.2840 Acer truncatum HOM05D004185 ORTHO05D005294 8.4e-103 377.5 229 81.2
Cfa007152 Carpinus fangiana HOM05D004185 ORTHO05D005294 8.4e-103 377.5 237 79.3
arahy.Tifrunner.gnm1.ann1.DC6XCB Arachis hypogaea HOM05D004185 ORTHO05D005294 2.4e-102 375.9 247 75.7
Sc07g0003880 Simmondsia chinensis HOM05D004185 ORTHO05D005294 2.4e-102 375.9 230 81.7
arahy.Tifrunner.gnm1.ann1.J4TN1Z Arachis hypogaea HOM05D004185 ORTHO05D005294 3.2e-102 375.6 247 75.3
TAR622G0010 Trochodendron aralioides HOM05D004185 ORTHO05D005294 4.2e-102 375.2 233 79.8
GSVIVG01032967001 Vitis vinifera HOM05D004185 ORTHO05D005294 5.5e-102 374.8 236 79.2
Ca_08226_v3 Cicer arietinum L. HOM05D004185 ORTHO05D005294 2.1e-101 372.9 232 77.6
Actinidia37713 Actinidia chinensis HOM05D004185 ORTHO05D005294 2.7e-101 372.5 241 74.7
Ciclev10005565m.g Citrus clementina HOM05D004185 ORTHO05D005294 7.9e-101 370.9 233 81.5
Haze_14968 Corylus avellana HOM05D004185 ORTHO05D005294 7.9e-101 370.9 237 78.9
Medtr7g084480 Medicago truncatula HOM05D004185 ORTHO05D005294 7.9e-101 370.9 228 80.3
Psat3g092000 Pisum sativum HOM05D004185 ORTHO05D005294 7.9e-101 370.9 228 78.9
QL08p064476 Quercus lobata HOM05D004185 ORTHO05D005294 7.9e-101 370.9 230 79.1
CiPaw.07G054200 Carya illinoinensis HOM05D004185 ORTHO05D005294 1.0e-100 370.5 238 77.3
PSO017G0731 Papaver somniferum HOM05D004185 ORTHO05D005294 1.3e-100 370.2 229 79.5
PGR142G0491 Punica granatum HOM05D004185 ORTHO05D005294 1.3e-100 370.2 231 78.8
TPR.G26467 Trifolium pratense HOM05D004185 ORTHO05D005294 1.3e-100 370.2 231 77.9
CAN.G767.4 Capsicum annuum HOM05D004185 ORTHO05D005294 1.8e-100 369.8 232 77.6
PSO478G4545 Papaver somniferum HOM05D004185 ORTHO05D005294 1.8e-100 369.8 229 79.5
Hma1.2p1_0565F.1_g179520 Hydrangea macrophylla HOM05D004185 ORTHO05D005294 5.1e-100 368.2 233 78.1
Lj1A1083G27 Lonicera japonica HOM05D004185 ORTHO05D005294 6.7e-100 367.9 233 79.0
Manes.11G075000 Manihot esculenta HOM05D004185 ORTHO05D005294 6.7e-100 367.9 228 79.8
Prupe.6G095300 Prunus persica HOM05D004185 ORTHO05D005294 6.7e-100 367.9 233 77.7
Sabra16G0256800 Salix brachista HOM05D004185 ORTHO05D005294 6.7e-100 367.9 238 76.1
Eucgr.F01985 Eucalyptus grandis HOM05D004185 ORTHO05D005294 1.5e-99 366.7 228 78.1
PGSC0003DMG402004569 Solanum tuberosum HOM05D004185 ORTHO05D005294 1.5e-99 366.7 232 77.2
MD11G1131000 Malus domestica HOM05D004185 ORTHO05D005294 2.5e-99 365.9 233 77.7
Solyc10g005930.2 Solanum lycopersicum HOM05D004185 ORTHO05D005294 2.5e-99 365.9 232 76.7
Sopen10g001890 Solanum pennellii HOM05D004185 ORTHO05D005294 2.5e-99 365.9 232 76.7
TAR374G1058 Trochodendron aralioides HOM05D004185 ORTHO05D005294 2.5e-99 365.9 267 72.3
Aqoxy6G01376 Aquilegia oxysepala HOM05D004185 ORTHO05D005294 5.6e-99 364.8 231 77.9
Actinidia19546 Actinidia chinensis HOM05D004185 ORTHO05D005294 9.6e-99 364.0 229 76.4
Rhsim01G0198500 Rhododendron simsii HOM05D004185 ORTHO05D005294 1.6e-98 363.2 241 74.3
Lj1g0009190 Lotus japonicus HOM05D004185 ORTHO05D005294 2.8e-98 362.5 230 77.0
HanXRQChr03g0070171 Helianthus annuus HOM05D004185 ORTHO05D005294 3.7e-98 362.1 232 76.7
MD03G1104500 Malus domestica HOM05D004185 ORTHO05D005294 3.7e-98 362.1 231 77.5
Lj2g0021694 Lotus japonicus HOM05D004185 ORTHO05D005294 6.2e-98 361.3 230 77.0
Rhsim08G0038300 Rhododendron simsii HOM05D004185 ORTHO05D005294 6.2e-98 361.3 241 74.3
Cpa.g.sc139.45 Carica papaya HOM05D004185 ORTHO05D005294 1.4e-97 360.1 228 78.9
Oeu023432.1 Olea europaea HOM05D004185 ORTHO05D005294 3.1e-97 359.0 231 77.1
Duzib084G1135 Durio zibethinus HOM05D004185 ORTHO05D005294 5.3e-97 358.2 233 75.5
HanXRQChr05g0146191 Helianthus annuus HOM05D004185 ORTHO05D005294 5.3e-97 358.2 232 75.0
RcHm_v2.0_Chr7g0223141 Rosa chinensis HOM05D004185 ORTHO05D005294 5.3e-97 358.2 233 76.8
FAN14G0322 Fragaria x ananassa HOM05D004185 ORTHO05D005294 6.9e-97 357.8 233 76.4
Glyma.16G046900 Glycine max HOM05D004185 ORTHO05D005294 6.9e-97 357.8 230 78.3
COL.COLO4_05853 Corchorus olitorius HOM05D004546 ORTHO05D005294 9.0e-97 357.5 232 75.9
Lalb_Chr02g0153581 Lupinus albus HOM05D004185 ORTHO05D005294 9.0e-97 357.5 230 77.4
SalBow2G1694 Salvia bowleyana HOM05D004185 ORTHO05D005294 9.0e-97 357.5 232 75.0
vmacro18393 Vaccinium macrocarpon HOM05D004185 ORTHO05D005294 9.0e-97 357.5 242 74.0
Potri.001G391400 Populus trichocarpa HOM05D004185 ORTHO05D005294 1.2e-96 357.1 233 75.5
TWI63G0858 Tripterygium wilfordii HOM05D004185 ORTHO05D005294 1.2e-96 357.1 234 77.4
ECA232G0163 Erigeron canadensis HOM05D004185 ORTHO05D005294 1.5e-96 356.7 232 74.6
VMungo0464G1671 Vigna mungo HOM05D004185 ORTHO05D005294 3.4e-96 355.5 230 77.8
SGA_v2.0_scaffold114G31833 Striga asiatica HOM05D004185 ORTHO05D005294 5.8e-96 354.8 231 77.1
Thecc.04G049500 Theobroma cacao HOM05D004185 ORTHO05D005294 1.0e-95 354.0 228 77.2
AUR62021660 Chenopodium quinoa HOM05D004185 ORTHO05D005294 1.7e-95 353.2 228 76.3
FAN16G0073 Fragaria x ananassa HOM05D004185 ORTHO05D005294 1.7e-95 353.2 236 75.4
EL10Ac5g11038 Beta vulgaris HOM05D004185 ORTHO05D005294 2.9e-95 352.4 233 75.5
AUR62008433 Chenopodium quinoa HOM05D004185 ORTHO05D005294 2.9e-95 352.4 228 76.3
Migut.D01934 Erythranthe guttata HOM05D004185 ORTHO05D005294 2.9e-95 352.4 233 75.5
FAN05G5133 Fragaria x ananassa HOM05D004185 ORTHO05D005294 2.9e-95 352.4 233 76.0
Gohir.A09G051200 Gossypium hirsutum HOM05D004185 ORTHO05D005294 2.9e-95 352.4 242 74.0
MSTRG.11461 Avicennia marina HOM05D004185 ORTHO05D005294 6.5e-95 351.3 224 77.7
ATR0602G180 Amborella trichopoda HOM05D004185 ORTHO05D005294 8.4e-95 350.9 231 75.8
Gohir.D01G158300 Gossypium hirsutum HOM05D004185 ORTHO05D005294 1.1e-94 350.5 234 74.8
Gorai.002G196300 Gossypium raimondii HOM05D004185 ORTHO05D005294 1.1e-94 350.5 234 74.8
Lsat_1_v5_gn_9_110520 Lactuca sativa HOM05D004185 ORTHO05D005294 1.1e-94 350.5 231 75.3
FAN21G3167 Fragaria x ananassa HOM05D004185 ORTHO05D005294 2.5e-94 349.4 233 75.5
Peaxi162Scf00060g00441 Petunia axillaris HOM05D004185 ORTHO05D005294 1.2e-93 347.1 214 79.9
Zm00001eb332710 Zea mays HOM05D004185 ORTHO05D005294 2.7e-93 345.9 231 75.3
Atru.chr11.1029 Acer truncatum HOM05D004185 ORTHO05D005294 4.6e-93 345.1 205 82.4
FvH4_3g33130 Fragaria vesca HOM05D004185 ORTHO05D005294 7.9e-93 344.4 233 74.7
DCAR_009570 Daucus carota HOM05D004185 ORTHO05D005294 5.1e-92 341.7 231 74.0
THA.LOC104812726 Tarenaya hassleriana HOM05D004185 ORTHO05D005294 1.1e-91 340.5 228 73.2
Os01g0276500 Oryza sativa ssp. japonica HOM05D004185 ORTHO05D005294 1.5e-91 340.1 231 74.0
CDE09G0075 Ceratophyllum demersum HOM05D004185 ORTHO05D005294 2.5e-91 339.3 231 73.2
A09p34390 Brassica napus HOM05D004185 ORTHO05D005294 4.3e-91 338.6 230 72.6
BraA09t38984Z Brassica rapa HOM05D004185 ORTHO05D005294 4.3e-91 338.6 230 72.6
BcaB03g13785 Brassica carinata HOM05D004185 ORTHO05D005294 7.4e-91 337.8 234 71.8
BcaC05g27950 Brassica carinata HOM05D004185 ORTHO05D005294 7.4e-91 337.8 230 73.0
C05p39540 Brassica napus HOM05D004185 ORTHO05D005294 7.4e-91 337.8 230 73.0
BolC5t32695H Brassica oleracea HOM05D004185 ORTHO05D005294 7.4e-91 337.8 230 73.0
SEGI_19426 Sequoiadendron giganteum HOM05D004185 ORTHO05D005294 9.6e-91 337.4 233 72.5
CARHR031200 Cardamine hirsuta HOM05D004185 ORTHO05D005294 2.8e-90 335.9 230 72.6
Thhalv10008417m.g Eutrema salsugineum HOM05D004185 ORTHO05D005294 3.7e-90 335.5 230 72.2
Aa31LG2G14180 Aethionema arabicum HOM05D004185 ORTHO05D005294 6.3e-90 334.7 228 72.4
BraA05t21430Z Brassica rapa HOM05D004185 ORTHO05D005294 6.3e-90 334.7 229 72.9
A05p25460 Brassica napus HOM05D004185 ORTHO05D005294 8.2e-90 334.3 229 72.5
BcaB07g32843 Brassica carinata HOM05D004185 ORTHO05D005294 1.1e-89 334.0 230 72.6
Nitab4.5_0000426g0080 Nicotiana tabacum HOM05D004185 ORTHO05D005294 1.8e-89 333.2 235 71.5
Sp1g27580 Schrenkiella parvula HOM05D004185 ORTHO05D005294 3.1e-89 332.4 230 71.7
AL1G45960 Arabidopsis lyrata HOM05D004185 ORTHO05D005294 4.1e-89 332.0 230 71.7
AT1G31860 Arabidopsis thaliana HOM05D004185 ORTHO05D005294 6.9e-89 331.3 230 71.3
unitig_0.g1440 Utricularia gibba HOM05D004185 ORTHO05D005294 1.2e-88 330.5 231 73.6
Nitab4.5_0002655g0020 Nicotiana tabacum HOM05D004185 ORTHO05D005294 2.6e-88 329.3 230 72.2
CsaV3_5G025000 Cucumis sativus L. HOM05D004185 ORTHO05D005294 4.5e-88 328.6 230 69.1
ClCG01G007890 Citrullus lanatus HOM05D004185 ORTHO05D005294 3.8e-87 325.5 220 69.5
MELO3C005094.2 Cucumis melo HOM05D004185 ORTHO05D005294 5.0e-87 325.1 230 68.7
BcaC05g27215 Brassica carinata HOM05D004185 ORTHO05D005294 8.4e-87 324.3 235 69.8
BolC5t31845H Brassica oleracea HOM05D004185 ORTHO05D005294 8.4e-87 324.3 235 69.8
Hund11935 Selenicereus undatus HOM05D004185 ORTHO05D005294 7.2e-86 321.2 204 77.5
FAN25G2535 Fragaria x ananassa HOM05D004185 ORTHO05D005294 7.9e-85 317.8 229 70.3
Gorai.006G057300 Gossypium raimondii HOM05D004185 ORTHO05D005294 7.9e-85 317.8 234 70.5
SMO119G0194 Selaginella moellendorffii HOM05D004185 ORTHO05D005294 2.3e-84 316.2 233 67.8
AagrBONN_evm.TU.Sc2ySwM_228.4587 Anthoceros agrestis HOM05D004185 ORTHO05D005294 6.7e-84 314.7 233 68.2
CDE02G0170 Ceratophyllum demersum HOM05D004185 ORTHO05D005294 1.5e-83 313.5 212 72.6
SHI18823 Sapria himalayana HOM05D004185 ORTHO05D005294 4.3e-83 312.0 240 67.1
Cc02_g08450 Coffea canephora HOM05D004185 ORTHO05D005294 1.6e-82 310.1 201 78.6
Mapoly0010s0125 Marchantia polymorpha HOM05D004185 ORTHO05D005294 4.8e-82 308.5 228 68.9
Phvul.001G082700 Phaseolus vulgaris HOM05D004185 ORTHO05D005294 1.4e-81 307.0 201 78.1
RcHm_v2.0_Chr5g0060441 Rosa chinensis HOM05D004185 ORTHO05D005294 6.9e-81 304.7 204 74.5
Sed0024479 Sechium edule HOM05D004185 ORTHO05D005294 9.0e-81 304.3 204 73.5
arahy.Tifrunner.gnm1.ann1.75SEPN Arachis hypogaea HOM05D004185 ORTHO05D005294 1.5e-80 303.5 247 64.4
CSS0049496 Camellia sinensis var. sinensis HOM05D004185 ORTHO05D005294 1.5e-80 303.5 192 78.1
Haze_15442 Corylus avellana HOM05D004185 ORTHO05D005294 1.0e-79 300.8 231 68.4
MD03G1104300 Malus domestica HOM05D004185 ORTHO05D005294 1.8e-76 290.0 233 66.5
Carub.0001s3019 Capsella rubella HOM05D004185 ORTHO05D005294 6.7e-76 288.1 199 71.9
Gohir.D09G052300 Gossypium hirsutum HOM05D004185 ORTHO05D005294 1.1e-75 287.3 201 71.1
Pp3c19_11880 Physcomitrium patens HOM05D004185 ORTHO05D005294 5.7e-75 285.0 228 63.2
HPP92_023021 Vanilla planifolia HOM05D004185 ORTHO05D005294 1.4e-73 280.4 199 71.4
CBR_g41148 Chara braunii HOM05D004185 ORTHO05D005294 1.8e-73 280.0 244 59.4
MBI07_g07565_MAGBIO Magnolia biondii HOM05D004185 ORTHO05D005294 5.9e-72 275.0 166 80.1
MCO14G189 Micromonas commoda HOM05D004185 ORTHO05D005294 6.7e-68 261.5 237 59.1
CBR_g45683 Chara braunii HOM05D004185 ORTHO05D005294 4.4e-67 258.8 230 57.8
FAN02G1839 Fragaria x ananassa HOM05D004185 ORTHO05D005294 5.7e-67 258.5 178 73.0
CSS0023313 Camellia sinensis var. sinensis HOM05D004185 ORTHO05D005294 9.7e-67 257.7 187 71.7
FvH4_6g09080 Fragaria vesca HOM05D004185 ORTHO05D005294 2.8e-66 256.1 165 75.2
PRCOL_00000818 Prasinoderma coloniale HOM05D004185 ORTHO05D005294 2.0e-64 250.0 227 55.9
C05p31190 Brassica napus HOM05D004185 ORTHO05D005294 1.9e-62 243.4 230 57.0
Nn7g37500 Nelumbo nucifera HOM05D004185 ORTHO05D005294 1.6e-61 240.4 119 96.6
CSS0015772 Camellia sinensis var. sinensis HOM05D004185 ORTHO05D005294 2.3e-60 236.5 148 76.4
Cre13.g576650 Chlamydomonas reinhardtii HOM05D004185 ORTHO05D005294 8.8e-60 234.6 238 52.5
QL02p069093 Quercus lobata HOM05D004185 ORTHO05D005294 2.9e-55 219.5 148 72.3
Gorai.008G088200 Gossypium raimondii HOM05D004185 ORTHO05D005294 6.1e-53 211.8 235 51.5
Cc00_g25400 Coffea canephora HOM05D004185 ORTHO05D005294 4.4e-51 205.7 146 71.2
Dinv33271 Davidia involucrata HOM05D004185 ORTHO05D005294 2.9e-47 193.0 163 61.3
Gorai.007G236100 Gossypium raimondii HOM05D004185 ORTHO05D005294 7.2e-46 188.3 147 64.6
Gohir.D11G219700 Gossypium hirsutum HOM05D004185 ORTHO05D005294 1.8e-44 183.7 147 63.9
Gohir.1Z049452 Gossypium hirsutum HOM05D004185 ORTHO05D005294 4.5e-40 169.1 133 65.4
vmacro12996 Vaccinium macrocarpon HOM05D004185 ORTHO05D005294 1.4e-36 157.5 158 55.7
CDE01G0632 Ceratophyllum demersum HOM05D004185 ORTHO05D005294 4.4e-35 152.5 119 67.2
Gohir.1Z049352 Gossypium hirsutum HOM05D004185 ORTHO05D005294 4.6e-32 142.5 87 78.2
Gohir.D12G080201 Gossypium hirsutum HOM05D004185 ORTHO05D005294 4.6e-32 142.5 87 78.2
Prupe.6G096900 Prunus persica HOM05D004185 ORTHO05D005294 2.3e-31 140.2 123 59.3
MD03G1104400 Malus domestica HOM05D004185 ORTHO05D005294 2.1e-29 133.7 157 50.3
Nn7g37501 Nelumbo nucifera HOM05D004185 ORTHO05D005294 1.8e-28 130.6 75 92.0
Gohir.D11G259201 Gossypium hirsutum HOM05D002015 ORTHO05D016007 3.2e-25 119.8 77 74.0
Gorai.002G177700 Gossypium raimondii HOM05D002015 ORTHO05D016007 7.0e-25 118.6 77 74.0
Gohir.D01G143966 Gossypium hirsutum HOM05D002015 ORTHO05D016007 1.2e-24 117.9 77 72.7
Gohir.D02G127900 Gossypium hirsutum HOM05D002015 ORTHO05D016007 1.6e-24 117.5 77 72.7
Gohir.D04G064100 Gossypium hirsutum HOM05D002015 ORTHO05D016007 7.8e-24 115.2 77 70.1
Ca_29370_v3 Cicer arietinum L. HOM05D004185 ORTHO05D005294 1.3e-23 114.4 227 33.9
arahy.Tifrunner.gnm1.ann1.R9VNWC Arachis hypogaea HOM05D004185 ORTHO05D085194 1.8e-20 104.0 90 57.8
QL02p069129 Quercus lobata HOM05D004185 ORTHO05D005294 3.1e-20 103.2 66 80.3
QL02p068903 Quercus lobata HOM05D004185 ORTHO05D005294 1.1e-17 94.7 67 76.1
QL02p069147 Quercus lobata HOM05D004185 ORTHO05D005294 7.1e-17 92.0 68 72.1
SMO179G0001 Selaginella moellendorffii HOM05D004185 ORTHO05D005294 9.2e-17 91.7 68 69.1
QL02p069014 Quercus lobata HOM05D004185 ORTHO05D005294 4.7e-13 79.3 46 89.1
Glyma.11G241900 Glycine max HOM05D004185 ORTHO05D005294 6.2e-13 79.0 64 67.2
SMO119G0521 Selaginella moellendorffii HOM05D004185 ORTHO05D005294 4.4e-11 72.8 68 55.9
Gorai.005G143700 Gossypium raimondii HOM05D004185 ORTHO05D016007 9.9e-11 71.6 44 75.0
Gohir.D13G151200 Gossypium hirsutum HOM05D004185 ORTHO05D016007 1.4e-09 67.8 44 68.2
DCAR_020016 Daucus carota HOM05D004185 ORTHO05D005294 9.2e-09 65.1 62 54.8
Cfa023091 Carpinus fangiana HOM05D004109 ORTHO05D005867 1.3e-07 61.2 198 28.3


User provided reference genes

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