Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g02903 Nelumbo nucifera HOM05D006656 ORTHO05D008208 5.3e-93 344.4 175 100.0
arahy.Tifrunner.gnm1.ann1.CLZM2Q Arachis hypogaea HOM05D006656 ORTHO05D008208 2.8e-70 268.9 163 79.8
Dinv29827 Davidia involucrata HOM05D006656 ORTHO05D008208 2.8e-70 268.9 164 81.1
Ciclev10006077m.g Citrus clementina HOM05D006656 ORTHO05D008208 1.4e-69 266.5 162 80.9
Eucgr.H02989 Eucalyptus grandis HOM05D006656 ORTHO05D008208 2.4e-69 265.8 161 82.0
Cpa.g.sc44.21 Carica papaya HOM05D006656 ORTHO05D008208 5.3e-69 264.6 164 78.7
Gohir.A09G228200 Gossypium hirsutum HOM05D006656 ORTHO05D008208 5.3e-69 264.6 164 79.3
ECA248G3216 Erigeron canadensis HOM05D006656 ORTHO05D008208 7.0e-69 264.2 163 79.1
Sed0021014 Sechium edule HOM05D006656 ORTHO05D008208 7.0e-69 264.2 163 79.8
Sc25g0003620 Simmondsia chinensis HOM05D006656 ORTHO05D008208 9.1e-69 263.8 158 82.3
Thecc.04G260300 Theobroma cacao HOM05D006656 ORTHO05D008208 1.5e-68 263.1 164 79.3
Dinv27090 Davidia involucrata HOM05D006656 ORTHO05D008208 2.6e-68 262.3 162 79.6
Hund11920 Selenicereus undatus HOM05D006656 ORTHO05D008208 3.5e-68 261.9 162 79.0
Gohir.D09G229300 Gossypium hirsutum HOM05D006656 ORTHO05D008208 4.5e-68 261.5 162 79.6
Gorai.006G252000 Gossypium raimondii HOM05D006656 ORTHO05D008208 4.5e-68 261.5 162 79.6
ClCG05G004140 Citrullus lanatus HOM05D006656 ORTHO05D008208 1.0e-67 260.4 158 80.4
Nitab4.5_0001425g0100 Nicotiana tabacum HOM05D006656 ORTHO05D008208 1.3e-67 260.0 161 79.5
QL06p020043 Quercus lobata HOM05D006656 ORTHO05D008208 1.3e-67 260.0 164 78.0
THA.LOC104804764 Tarenaya hassleriana HOM05D006656 ORTHO05D008208 1.3e-67 260.0 159 78.0
Lalb_Chr03g0037311 Lupinus albus HOM05D006656 ORTHO05D008208 1.7e-67 259.6 164 77.4
Potri.010G068200 Populus trichocarpa HOM05D006656 ORTHO05D008208 1.7e-67 259.6 158 80.4
MBI07_g22362_MAGBIO Magnolia biondii HOM05D006656 ORTHO05D008208 2.9e-67 258.8 160 81.2
Atru.chr4.1959 Acer truncatum HOM05D006656 ORTHO05D008208 5.0e-67 258.1 153 81.7
CANSAT78G1635 Cannabis sativa HOM05D006656 ORTHO05D008208 6.5e-67 257.7 156 81.4
PGR004G1080 Punica granatum HOM05D006656 ORTHO05D008208 6.5e-67 257.7 159 81.1
CSS0031602 Camellia sinensis var. sinensis HOM05D006656 ORTHO05D008208 8.5e-67 257.3 164 76.8
COL.COLO4_15934 Corchorus olitorius HOM05D006656 ORTHO05D008208 8.5e-67 257.3 159 78.0
MBI14_g30459_MAGBIO Magnolia biondii HOM05D006656 ORTHO05D008208 1.1e-66 256.9 160 80.0
Manes.13G093430 Manihot esculenta HOM05D006656 ORTHO05D008208 1.5e-66 256.5 163 76.7
Medtr1g041795 Medicago truncatula HOM05D006656 ORTHO05D008208 1.9e-66 256.1 160 75.0
CiPaw.01G180600 Carya illinoinensis HOM05D006656 ORTHO05D008208 2.5e-66 255.8 161 79.5
TWI09G0269 Tripterygium wilfordii HOM05D006656 ORTHO05D008208 2.5e-66 255.8 162 77.2
TWI09G1522 Tripterygium wilfordii HOM05D006656 ORTHO05D008208 2.5e-66 255.8 162 77.2
Hma1.2p1_0112F.1_g054500 Hydrangea macrophylla HOM05D006656 ORTHO05D008208 3.2e-66 255.4 158 79.7
PSO447G0273 Papaver somniferum HOM05D006656 ORTHO05D008208 3.2e-66 255.4 154 82.5
PSO210G7176 Papaver somniferum HOM05D006656 ORTHO05D008208 4.2e-66 255.0 155 81.3
Lj6g0027143 Lotus japonicus HOM05D006656 ORTHO05D008208 5.5e-66 254.6 159 77.4
SalBow3G1837 Salvia bowleyana HOM05D006656 ORTHO05D008208 1.2e-65 253.4 168 75.6
Actinidia39917 Actinidia chinensis HOM05D006656 ORTHO05D008208 1.6e-65 253.1 157 78.3
TPR.G25151 Trifolium pratense HOM05D006656 ORTHO05D008208 1.6e-65 253.1 160 75.0
EL10Ac3g04969 Beta vulgaris HOM05D006656 ORTHO05D008208 2.1e-65 252.7 159 78.6
CsaV3_3G011860 Cucumis sativus L. HOM05D006656 ORTHO05D008208 2.1e-65 252.7 164 76.8
Glyma.10G005200 Glycine max HOM05D006656 ORTHO05D008208 2.7e-65 252.3 157 77.7
HanXRQChr01g0022881 Helianthus annuus HOM05D006656 ORTHO05D008208 2.7e-65 252.3 163 76.7
HanXRQChr04g0115371 Helianthus annuus HOM05D006656 ORTHO05D008208 2.7e-65 252.3 163 76.1
Peaxi162Scf00602g00515 Petunia axillaris HOM05D006656 ORTHO05D008208 2.7e-65 252.3 162 75.9
MD13G1218700 Malus domestica HOM05D006656 ORTHO05D008208 4.7e-65 251.5 159 76.1
MSTRG.4156 Avicennia marina HOM05D006656 ORTHO05D008208 8.0e-65 250.8 164 73.8
Nitab4.5_0013448g0010 Nicotiana tabacum HOM05D006656 ORTHO05D008208 8.0e-65 250.8 155 79.4
Aqoxy2G03715 Aquilegia oxysepala HOM05D006656 ORTHO05D008208 1.0e-64 250.4 160 76.9
Ah.13g072350 Amaranthus hybridus HOM05D006656 ORTHO05D008208 1.4e-64 250.0 162 77.2
RcHm_v2.0_Chr4g0394701 Rosa chinensis HOM05D006656 ORTHO05D008208 1.4e-64 250.0 158 77.2
arahy.Tifrunner.gnm1.ann1.DD5QG4 Arachis hypogaea HOM05D006656 ORTHO05D008208 1.8e-64 249.6 150 79.3
CAN.G220.47 Capsicum annuum HOM05D006656 ORTHO05D008208 1.8e-64 249.6 157 76.4
Sabra10G0038900 Salix brachista HOM05D006656 ORTHO05D008208 1.8e-64 249.6 152 80.9
Solyc09g090430.3 Solanum lycopersicum HOM05D006656 ORTHO05D008208 1.8e-64 249.6 156 76.9
Sopen09g033350 Solanum pennellii HOM05D006656 ORTHO05D008208 1.8e-64 249.6 156 76.9
PGSC0003DMG400017160 Solanum tuberosum HOM05D006656 ORTHO05D008208 1.8e-64 249.6 156 77.6
Phvul.007G275000 Phaseolus vulgaris HOM05D006656 ORTHO05D008208 2.3e-64 249.2 160 76.2
Ca_12138_v3 Cicer arietinum L. HOM05D006656 ORTHO05D008208 3.0e-64 248.8 158 74.7
FvH4_4g04220 Fragaria vesca HOM05D006656 ORTHO05D008208 3.0e-64 248.8 158 77.2
Migut.G00494 Erythranthe guttata HOM05D006656 ORTHO05D008208 6.7e-64 247.7 158 79.1
DCAR_030758 Daucus carota HOM05D000730 ORTHO05D008208 8.8e-64 247.3 146 80.1
Sp3g21170 Schrenkiella parvula HOM05D006656 ORTHO05D008208 8.8e-64 247.3 159 76.7
SpUn0047_0050 Schrenkiella parvula HOM05D006656 ORTHO05D008208 8.8e-64 247.3 159 76.7
AT3G23490 Arabidopsis thaliana HOM05D006656 ORTHO05D008208 1.1e-63 246.9 159 76.1
AL3G38180 Arabidopsis lyrata HOM05D006656 ORTHO05D008208 1.5e-63 246.5 159 76.1
BcaB06g26499 Brassica carinata HOM05D006656 ORTHO05D008208 1.5e-63 246.5 159 76.7
BraA07t28683Z Brassica rapa HOM05D006656 ORTHO05D008208 2.0e-63 246.1 159 76.7
Carub.0003s2372 Capsella rubella HOM05D006656 ORTHO05D008208 2.0e-63 246.1 159 76.1
FAN12G3008 Fragaria x ananassa HOM05D006656 ORTHO05D008208 2.0e-63 246.1 158 75.9
arahy.Tifrunner.gnm1.ann1.C3VAXP Arachis hypogaea HOM05D006656 ORTHO05D008208 2.6e-63 245.7 152 77.6
BcaC06g35534 Brassica carinata HOM05D006656 ORTHO05D008208 2.6e-63 245.7 159 76.1
A07p08920 Brassica napus HOM05D006656 ORTHO05D008208 2.6e-63 245.7 159 76.1
BolC7t41871H Brassica oleracea HOM05D006656 ORTHO05D008208 2.6e-63 245.7 159 76.1
C07p13760 Brassica napus HOM05D006656 ORTHO05D008208 3.3e-63 245.4 159 76.7
Lsat_1_v5_gn_1_75161 Lactuca sativa HOM05D006656 ORTHO05D008208 3.3e-63 245.4 164 73.2
Rhsim02G0042500 Rhododendron simsii HOM05D006656 ORTHO05D008208 3.3e-63 245.4 152 78.9
Thhalv10021585m.g Eutrema salsugineum HOM05D006656 ORTHO05D008208 5.7e-63 244.6 159 74.8
CDE02G2281 Ceratophyllum demersum HOM05D006656 ORTHO05D008208 1.7e-62 243.0 153 77.1
HPP92_001387 Vanilla planifolia HOM05D006656 ORTHO05D008208 2.2e-62 242.7 152 80.3
Psat6g137160 Pisum sativum HOM05D006656 ORTHO05D008208 8.2e-62 240.7 149 77.9
Prupe.1G045500 Prunus persica HOM05D006656 ORTHO05D008208 1.4e-61 240.0 158 74.1
AUR62002173 Chenopodium quinoa HOM05D006656 ORTHO05D008208 1.8e-61 239.6 152 78.9
MBI07_g15427_MAGBIO Magnolia biondii HOM05D006656 ORTHO05D008208 1.8e-61 239.6 160 76.9
vmacro15465 Vaccinium macrocarpon HOM05D006656 ORTHO05D008208 4.1e-61 238.4 143 80.4
FAN17G2925 Fragaria x ananassa HOM05D006656 ORTHO05D008208 9.1e-61 237.3 150 76.7
AUR62015536 Chenopodium quinoa HOM05D006656 ORTHO05D008208 1.2e-60 236.9 188 67.6
Os10g0471300 Oryza sativa ssp. japonica HOM05D006656 ORTHO05D008208 1.6e-60 236.5 154 76.6
Aa31LG8G9940 Aethionema arabicum HOM05D006656 ORTHO05D008208 7.7e-60 234.2 150 74.7
VMungo0720G2665 Vigna mungo HOM05D006656 ORTHO05D008208 1.3e-59 233.4 149 77.2
ATR0736G110 Amborella trichopoda HOM05D006656 ORTHO05D008208 6.5e-59 231.1 156 71.2
SGA_v2.0_scaffold67G22735 Striga asiatica HOM05D006656 ORTHO05D008208 6.5e-59 231.1 197 64.0
Zm00001eb046120 Zea mays HOM05D006656 ORTHO05D008208 1.9e-58 229.6 160 73.8
Lj3A676G52 Lonicera japonica HOM05D006656 ORTHO05D008208 1.4e-56 223.4 180 64.4
Pp3c19_11440 Physcomitrium patens HOM05D006656 ORTHO05D008208 1.6e-52 209.9 161 62.7
vmacro15466 Vaccinium macrocarpon HOM05D006656 ORTHO05D008208 6.5e-51 204.5 163 64.4
Mapoly0080s0009 Marchantia polymorpha HOM05D006656 ORTHO05D008208 1.8e-45 186.4 151 59.6
Duzib151G0018 Durio zibethinus HOM05D006656 ORTHO05D008208 3.5e-44 182.2 122 72.1
MELO3C006399.2 Cucumis melo HOM05D000603 ORTHO05D003510 1.7e-43 179.9 150 62.0
AagrBONN_evm.TU.Sc2ySwM_344.2747 Anthoceros agrestis HOM05D006656 ORTHO05D008208 2.3e-43 179.5 156 58.3
Cfa014756 Carpinus fangiana HOM05D006656 ORTHO05D008208 8.6e-43 177.6 116 75.9
GSVIVG01027874001 Vitis vinifera HOM05D006656 ORTHO05D008208 7.2e-42 174.5 93 88.2
Cc03_g05940 Coffea canephora HOM05D006656 ORTHO05D008208 1.2e-41 173.7 93 87.1
AL242U10020 Arabidopsis lyrata HOM05D006656 ORTHO05D008208 1.6e-41 173.3 114 75.4
HPP92_000029 Vanilla planifolia HOM05D006656 ORTHO05D008208 5.2e-40 168.3 162 60.5
Haze_11433 Corylus avellana HOM05D006656 ORTHO05D008208 5.7e-39 164.9 267 40.4
CBR_g36666 Chara braunii HOM05D006656 ORTHO05D008208 2.4e-37 159.5 158 48.7
CBR_g71972 Chara braunii HOM05D006656 ORTHO05D008208 1.6e-36 156.8 159 50.9
PRCOL_00005673 Prasinoderma coloniale HOM05D006656 ORTHO05D008208 1.7e-35 153.3 154 50.0
SMO271G0046 Selaginella moellendorffii HOM05D006656 ORTHO05D008208 2.4e-29 132.9 140 46.4
arahy.Tifrunner.gnm1.ann1.USJ12Z Arachis hypogaea HOM05D006656 ORTHO05D008208 3.2e-29 132.5 87 73.6
Nitab4.5_0000014g0170 Nicotiana tabacum HOM05D006656 ORTHO05D008208 2.7e-20 102.8 74 68.9
Gohir.A02G041301 Gossypium hirsutum HOM05D006656 ORTHO05D008208 5.6e-18 95.1 63 73.0
BcaB02g10054 Brassica carinata HOM05D006656 ORTHO05D008208 5.2e-16 88.6 64 70.3
BcaB06g27105 Brassica carinata HOM05D006656 ORTHO05D008208 9.9e-15 84.3 62 66.1
AagrBONN_evm.TU.Sc2ySwM_344.2745 Anthoceros agrestis HOM05D006656 ORTHO05D008208 1.7e-14 83.6 76 56.6
BolC2t11169H Brassica oleracea HOM05D006656 ORTHO05D008208 6.4e-14 81.6 55 72.7
BcaC09g51699 Brassica carinata HOM05D006656 ORTHO05D008208 1.4e-13 80.5 45 82.2
MCO04G243 Micromonas commoda HOM05D006656 ORTHO05D008208 2.3e-11 73.2 139 35.3
C05p47480 Brassica napus HOM05D006656 ORTHO05D008208 1.5e-10 70.5 37 89.2
C03p47720 Brassica napus HOM05D006656 ORTHO05D008208 9.6e-10 67.8 37 83.8
HPP92_027915 Vanilla planifolia HOM05D003501 ORTHO05D004388 6.2e-09 65.1 62 59.7


User provided reference genes

Program Settings