Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g02898 Nelumbo nucifera HOM05D004940 ORTHO05D007805 0.0e+00 1373.6 645 100.0
TAR362G0048 Trochodendron aralioides HOM05D004940 ORTHO05D007805 0.0e+00 1167.5 633 85.3
Aqoxy5G00176 Aquilegia oxysepala HOM05D004940 ORTHO05D007805 0.0e+00 1139.8 628 82.5
Cc01_g18010 Coffea canephora HOM05D004940 ORTHO05D007805 0.0e+00 1134.0 609 85.6
TWI12G0664 Tripterygium wilfordii HOM05D004940 ORTHO05D007805 0.0e+00 1133.6 627 83.4
Actinidia37536 Actinidia chinensis HOM05D004940 ORTHO05D007805 0.0e+00 1130.2 654 79.7
GSVIVG01028386001 Vitis vinifera HOM05D004940 ORTHO05D007805 0.0e+00 1129.8 634 82.8
Cpa.g.sc165.41 Carica papaya HOM05D004940 ORTHO05D007805 0.0e+00 1128.2 610 84.4
Thecc.01G253300 Theobroma cacao HOM05D004940 ORTHO05D007805 0.0e+00 1125.2 632 82.9
Lsat_1_v5_gn_8_92240 Lactuca sativa HOM05D004940 ORTHO05D007805 0.0e+00 1121.7 630 81.6
vmacro02697 Vaccinium macrocarpon HOM05D004940 ORTHO05D007805 0.0e+00 1119.8 630 80.6
Potri.014G195500 Populus trichocarpa HOM05D004940 ORTHO05D007805 0.0e+00 1115.1 627 82.1
RcHm_v2.0_Chr6g0287291 Rosa chinensis HOM05D004940 ORTHO05D007805 0.0e+00 1115.1 629 82.0
Atru.chr5.1786 Acer truncatum HOM05D004940 ORTHO05D007805 0.0e+00 1112.8 631 81.6
Sabra14G0144700 Salix brachista HOM05D004940 ORTHO05D007805 0.0e+00 1111.3 626 82.1
arahy.Tifrunner.gnm1.ann1.N1VHSE Arachis hypogaea HOM05D004940 ORTHO05D007805 0.0e+00 1109.7 630 81.0
Glyma.19G166800 Glycine max HOM05D004940 ORTHO05D007805 0.0e+00 1107.4 627 81.8
Dinv16378 Davidia involucrata HOM05D004940 ORTHO05D007805 0.0e+00 1106.3 627 81.8
Sc24g0003690 Simmondsia chinensis HOM05D004940 ORTHO05D007805 0.0e+00 1105.1 630 80.6
Medtr7g098010 Medicago truncatula HOM05D004940 ORTHO05D007805 0.0e+00 1103.6 628 81.8
PSO764G0099 Papaver somniferum HOM05D004940 ORTHO05D007805 0.0e+00 1103.2 630 80.8
MSTRG.18341 Avicennia marina HOM05D004940 ORTHO05D007805 0.0e+00 1102.8 629 81.9
HanXRQChr04g0111301 Helianthus annuus HOM05D004940 ORTHO05D007805 0.0e+00 1102.0 628 79.9
Ciclev10019263m.g Citrus clementina HOM05D004940 ORTHO05D007805 0.0e+00 1101.3 627 81.2
Lj1g0003710 Lotus japonicus HOM05D004940 ORTHO05D007805 0.0e+00 1100.9 604 83.6
CANSAT01G2138 Cannabis sativa HOM05D004940 ORTHO05D007805 0.0e+00 1100.1 642 80.1
SalBow4G0784 Salvia bowleyana HOM05D004940 ORTHO05D007805 0.0e+00 1099.7 611 81.8
CAN.G1270.3 Capsicum annuum HOM05D004940 ORTHO05D007805 0.0e+00 1099.3 626 80.7
Gorai.004G057300 Gossypium raimondii HOM05D004940 ORTHO05D007805 0.0e+00 1098.2 632 81.2
Migut.D00459 Erythranthe guttata HOM05D004940 ORTHO05D007805 0.0e+00 1097.0 611 82.5
Sopen09g028520 Solanum pennellii HOM05D004940 ORTHO05D007805 0.0e+00 1097.0 630 79.8
MD10G1178900 Malus domestica HOM05D004940 ORTHO05D007805 0.0e+00 1096.6 611 82.7
Gohir.D08G056200 Gossypium hirsutum HOM05D004940 ORTHO05D007805 0.0e+00 1096.3 632 81.0
Psat3g055720 Pisum sativum HOM05D004940 ORTHO05D007805 0.0e+00 1094.7 628 81.1
arahy.Tifrunner.gnm1.ann1.YK26R7 Arachis hypogaea HOM05D004940 ORTHO05D007805 0.0e+00 1092.8 630 80.0
CsaV3_3G028180 Cucumis sativus L. HOM05D004940 ORTHO05D007805 0.0e+00 1092.4 612 81.7
CiPaw.03G268400 Carya illinoinensis HOM05D004940 ORTHO05D007805 0.0e+00 1091.6 626 80.2
ECA236G4817 Erigeron canadensis HOM05D004940 ORTHO05D007805 0.0e+00 1091.3 633 79.5
FAN27G1261 Fragaria x ananassa HOM05D004940 ORTHO05D007805 0.0e+00 1091.3 627 80.2
MD05G1192400 Malus domestica HOM05D004940 ORTHO05D007805 0.0e+00 1088.9 627 80.9
TPR.G9192 Trifolium pratense HOM05D004940 ORTHO05D007805 0.0e+00 1087.8 643 79.6
EL10Ac7g17647 Beta vulgaris HOM05D004940 ORTHO05D007805 0.0e+00 1087.0 627 79.6
FvH4_2g20890 Fragaria vesca HOM05D004940 ORTHO05D007805 0.0e+00 1086.2 627 80.2
Eucgr.A01366 Eucalyptus grandis HOM05D004940 ORTHO05D007805 0.0e+00 1085.5 601 81.2
Lalb_Chr01g0019571 Lupinus albus HOM05D004940 ORTHO05D007805 0.0e+00 1085.1 634 78.9
Migut.N02221 Erythranthe guttata HOM05D004940 ORTHO05D007805 0.0e+00 1084.3 611 81.3
MBI07_g18994_MAGBIO Magnolia biondii HOM05D004940 ORTHO05D007805 0.0e+00 1082.0 627 80.4
Manes.12G035200 Manihot esculenta HOM05D004940 ORTHO05D007805 0.0e+00 1079.7 608 81.2
PGR031G0691 Punica granatum HOM05D004940 ORTHO05D007805 0.0e+00 1078.5 601 81.5
Sed0008536 Sechium edule HOM05D004940 ORTHO05D007805 0.0e+00 1077.0 614 80.5
Phvul.001G163200 Phaseolus vulgaris HOM05D004940 ORTHO05D007805 0.0e+00 1075.5 640 78.6
VMungo1383G2176 Vigna mungo HOM05D004940 ORTHO05D007805 4.4e-312 1074.7 633 78.8
THA.LOC104826048 Tarenaya hassleriana HOM05D004940 ORTHO05D007805 5.7e-310 1067.0 647 75.6
CARHR003360 Cardamine hirsuta HOM05D004940 ORTHO05D007805 2.4e-308 1061.6 629 77.7
Duzib133G0552 Durio zibethinus HOM05D004940 ORTHO05D007805 2.6e-307 1058.1 605 81.3
Thhalv10007051m.g Eutrema salsugineum HOM05D004940 ORTHO05D007805 4.5e-307 1057.4 622 77.8
AT1G04010 Arabidopsis thaliana HOM05D004940 ORTHO05D007805 6.5e-306 1053.5 635 75.7
Glyma.03G165500 Glycine max HOM05D004940 ORTHO05D007805 8.5e-306 1053.1 601 81.4
Zm00001eb258680 Zea mays HOM05D004940 ORTHO05D007805 8.5e-306 1053.1 632 76.1
Carub.0001s0317 Capsella rubella HOM05D004940 ORTHO05D007805 2.5e-305 1051.6 621 77.1
Aa31LG1G20810 Aethionema arabicum HOM05D004940 ORTHO05D007805 3.2e-305 1051.2 621 76.7
DCAR_000927 Daucus carota HOM05D004940 ORTHO05D007805 5.5e-305 1050.4 638 75.5
Rhsim13G0038600 Rhododendron simsii HOM05D004940 ORTHO05D007805 9.4e-305 1049.7 839 61.3
BolC5t29011H Brassica oleracea HOM05D004940 ORTHO05D007805 3.6e-304 1047.7 613 77.8
QL09p040550 Quercus lobata HOM05D004940 ORTHO05D007805 3.6e-304 1047.7 771 66.1
BcaC07g42217 Brassica carinata HOM05D004940 ORTHO05D007805 6.1e-304 1047.0 608 77.5
BraA10t42520Z Brassica rapa HOM05D004940 ORTHO05D007805 2.3e-303 1045.0 613 77.5
Ca_08723_v3 Cicer arietinum L. HOM05D004940 ORTHO05D007805 2.3e-303 1045.0 600 81.0
A09p68080 Brassica napus HOM05D004940 ORTHO05D007805 4.0e-303 1044.3 608 77.3
Sp1g02850 Schrenkiella parvula HOM05D004940 ORTHO05D007805 4.0e-303 1044.3 608 77.6
C08p52520 Brassica napus HOM05D004940 ORTHO05D007805 8.8e-303 1043.1 627 75.6
BolC8t52779H Brassica oleracea HOM05D004940 ORTHO05D007805 8.8e-303 1043.1 627 75.6
BraA09t42143Z Brassica rapa HOM05D004940 ORTHO05D007805 8.8e-303 1043.1 627 75.8
C05p02330 Brassica napus HOM05D004940 ORTHO05D007805 4.8e-301 1037.3 640 74.5
CSS0021031 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D007805 9.1e-300 1033.1 627 77.4
A10p02520 Brassica napus HOM05D004940 ORTHO05D007805 5.9e-299 1030.4 640 74.2
BcaC05g24475 Brassica carinata HOM05D004940 ORTHO05D007805 2.9e-298 1028.1 595 78.0
FAN20G1599 Fragaria x ananassa HOM05D004940 ORTHO05D007805 1.9e-297 1025.4 736 67.9
Haze_24676 Corylus avellana HOM05D004940 ORTHO05D007805 1.7e-293 1012.3 672 71.1
ClCG07G001250 Citrullus lanatus HOM05D004940 ORTHO05D007805 7.2e-289 996.9 604 77.5
ATR0736G200 Amborella trichopoda HOM05D004940 ORTHO05D007805 8.8e-287 989.9 606 75.7
FAN15G2608 Fragaria x ananassa HOM05D004940 ORTHO05D007805 5.7e-286 987.3 664 71.7
TWI75G1829 Tripterygium wilfordii HOM05D004940 ORTHO05D007805 7.5e-286 986.9 556 82.0
Solyc09g072710.4 Solanum lycopersicum HOM05D004940 ORTHO05D007805 5.4e-284 980.7 630 73.2
FAN24G3024 Fragaria x ananassa HOM05D004940 ORTHO05D007805 2.0e-283 978.8 664 71.2
SGA_v2.0_scaffold1G00640 Striga asiatica HOM05D004940 ORTHO05D007805 2.9e-277 958.4 584 77.6
COL.COLO4_36581 Corchorus olitorius HOM05D004940 ORTHO05D007805 1.7e-274 949.1 541 82.3
Manes.13G037500 Manihot esculenta HOM05D004940 ORTHO05D007805 3.3e-273 944.9 579 76.3
Prupe.8G218700 Prunus persica HOM05D004940 ORTHO05D007805 5.6e-273 944.1 537 82.9
Lj1C71G15 Lonicera japonica HOM05D004940 ORTHO05D007805 7.5e-270 933.7 544 79.8
AL1G13620 Arabidopsis lyrata HOM05D004940 ORTHO05D007805 1.4e-268 929.5 542 77.1
Gohir.A08G045700 Gossypium hirsutum HOM05D004940 ORTHO05D007805 3.2e-268 928.3 541 81.1
AUR62008763 Chenopodium quinoa HOM05D004940 ORTHO05D007805 1.1e-265 919.8 623 70.8
Hund05470 Selenicereus undatus HOM05D004940 ORTHO05D007805 1.1e-265 919.8 606 72.4
Peaxi162Scf00415g00416 Petunia axillaris HOM05D004940 ORTHO05D007805 2.0e-262 909.1 564 76.2
AUR62025474 Chenopodium quinoa HOM05D004940 ORTHO05D007805 5.8e-262 907.5 633 69.4
Oeu028892.3 Olea europaea HOM05D004940 ORTHO05D007805 4.6e-259 897.9 571 73.6
Nitab4.5_0002389g0100 Nicotiana tabacum HOM05D004940 ORTHO05D007805 1.4e-255 886.3 605 70.9
AagrBONN_evm.TU.Sc2ySwM_344.1925 Anthoceros agrestis HOM05D004940 ORTHO05D007805 9.6e-249 863.6 607 64.9
Mapoly0023s0070 Marchantia polymorpha HOM05D004940 ORTHO05D007805 1.1e-241 840.1 634 61.2
Nitab4.5_0003295g0190 Nicotiana tabacum HOM05D004940 ORTHO05D007805 2.1e-240 835.9 605 67.3
SMO137G0189 Selaginella moellendorffii HOM05D004940 ORTHO05D007805 4.6e-235 818.1 623 61.0
SMO137G0113 Selaginella moellendorffii HOM05D004940 ORTHO05D007805 2.5e-225 785.8 622 58.4
DCAR_018506 Daucus carota HOM05D004940 ORTHO05D007805 5.8e-222 774.6 490 72.4
Pp3c16_20320 Physcomitrium patens HOM05D004940 ORTHO05D007805 6.7e-218 761.1 556 63.7
MELO3C012862.2 Cucumis melo HOM05D004940 ORTHO05D007805 1.3e-216 756.9 443 80.1
HPP92_012807 Vanilla planifolia HOM05D004940 ORTHO05D007805 2.3e-202 709.5 410 79.8
CDE01G0548 Ceratophyllum demersum HOM05D004940 ORTHO05D007805 3.2e-196 689.1 462 71.0
Duzib138G0347 Durio zibethinus HOM05D004940 ORTHO05D007805 3.7e-184 649.0 374 78.9
Atru.chr5.1796 Acer truncatum HOM05D004940 ORTHO05D007805 9.8e-177 624.4 351 83.8
SHI09716 Sapria himalayana HOM05D004940 ORTHO05D000023 2.9e-173 612.8 438 68.5
PSO832G3423 Papaver somniferum HOM05D004940 ORTHO05D007805 3.8e-136 489.6 246 87.8
Lj1A78G31 Lonicera japonica HOM05D004940 ORTHO05D007805 1.2e-131 474.6 456 54.6
PSO832G4005 Papaver somniferum HOM05D004940 ORTHO05D007805 1.4e-122 444.5 258 81.0
Atru.chr5.1783 Acer truncatum HOM05D004940 ORTHO05D007805 5.7e-92 342.8 202 77.2
SEGI_08888 Sequoiadendron giganteum HOM05D004940 ORTHO05D007805 2.3e-85 320.9 188 75.0
PGSC0003DMG401024284 Solanum tuberosum HOM05D004940 ORTHO05D007805 2.2e-80 304.3 168 85.1
SalBow5G2300 Salvia bowleyana HOM05D004940 ORTHO05D007805 7.0e-74 282.7 178 74.7
Lj1C79T2 Lonicera japonica HOM05D004940 ORTHO05D007805 6.5e-64 249.6 130 83.8
HPP92_012808 Vanilla planifolia HOM05D004940 ORTHO05D007805 2.6e-60 237.7 122 86.1
SEGI_20278 Sequoiadendron giganteum HOM05D004940 ORTHO05D007805 1.6e-49 201.8 160 58.8
SMO181G0022 Selaginella moellendorffii HOM05D004940 ORTHO05D037547 2.7e-49 201.1 338 35.8
Os02g0814100 Oryza sativa ssp. japonica HOM05D004940 ORTHO05D007805 5.0e-48 196.8 141 63.8
Lsat_1_v5_gn_2_111960 Lactuca sativa HOM05D004940 ORTHO05D007805 1.8e-45 188.3 105 81.9
SHI09711 Sapria himalayana HOM05D004940 ORTHO05D018819 4.9e-43 180.3 121 66.9
Zm00001eb037190 Zea mays HOM05D004940 ORTHO05D007805 1.1e-42 179.1 83 95.2
SEGI_40684 Sequoiadendron giganteum HOM05D004940 ORTHO05D007805 1.7e-35 155.2 103 75.7
CSS0009798 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D022117 3.0e-32 144.4 87 75.9
CSS0004187 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D022117 5.1e-32 143.7 87 77.0
CSS0032793 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D022117 5.1e-32 143.7 87 77.0
MCO05G688 Micromonas commoda HOM05D001762 ORTHO05D001774 8.1e-30 136.3 208 36.5
Lj1C79G2 Lonicera japonica HOM05D004940 ORTHO05D003385 5.2e-29 133.7 66 92.4
CSS0034361 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D018819 1.5e-28 132.1 147 48.3
SEGI_20843 Sequoiadendron giganteum HOM05D004940 ORTHO05D007805 5.1e-24 117.1 82 72.0
Cre02.g106400 Chlamydomonas reinhardtii HOM05D001762 ORTHO05D001774 1.2e-22 112.5 222 30.2
VMungo0251G2796 Vigna mungo HOM05D004940 ORTHO05D007805 2.8e-22 111.3 51 92.2
Lj1C79T15 Lonicera japonica HOM05D004940 ORTHO05D048414 8.1e-22 109.8 73 74.0
CSS0008401 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D018819 2.6e-20 104.8 56 76.8
CSS0049470 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D018819 2.6e-20 104.8 56 76.8
Cfa024946 Carpinus fangiana HOM05D001762 ORTHO05D001774 2.6e-20 104.8 205 29.8
CSS0033490 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D018819 5.8e-20 103.6 56 76.8
CSS0026527 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D018819 8.4e-19 99.8 56 73.2
PRCOL_00006657 Prasinoderma coloniale HOM05D001762 ORTHO05D001774 1.4e-18 99.0 205 26.8
SMO181G0033 Selaginella moellendorffii HOM05D004940 ORTHO05D037547 7.1e-18 96.7 138 42.0
CSS0024627 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D018819 1.7e-16 92.0 51 76.5
CSS0048666 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D018819 1.7e-16 92.0 51 76.5
CSS0050068 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D022117 5.1e-16 90.5 79 58.2
Phvul.008G143913 Phaseolus vulgaris HOM05D004940 ORTHO05D022117 4.3e-15 87.4 79 55.7
SEGI_00315 Sequoiadendron giganteum HOM05D004940 ORTHO05D048414 2.8e-14 84.7 63 61.9
MBI13_g29642_MAGBIO Magnolia biondii HOM05D004940 ORTHO05D001085 4.2e-10 70.9 33 81.8
CSS0023541 Camellia sinensis var. sinensis HOM05D006117 ORTHO05D007996 3.0e-08 64.7 261 25.7
CSS0008179 Camellia sinensis var. sinensis HOM05D006117 ORTHO05D007996 3.9e-08 64.3 261 25.7
Eucgr.F02231 Eucalyptus grandis HOM05D006117 ORTHO05D007996 1.5e-07 62.4 262 25.2


User provided reference genes

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