Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g02880 Nelumbo nucifera HOM05D006470 ORTHO05D007978 3.5e-125 452.2 337 100.0
Nn3g19710 Nelumbo nucifera HOM05D006470 ORTHO05D007978 4.0e-65 252.7 324 75.6
Thecc.01G254400 Theobroma cacao HOM05D006470 ORTHO05D007978 2.2e-63 246.9 322 70.5
Hma1.2p1_0576F.1_g181850 Hydrangea macrophylla HOM05D006470 ORTHO05D007978 9.3e-62 241.5 331 54.4
COL.COLO4_04011 Corchorus olitorius HOM05D006470 ORTHO05D007978 1.9e-59 233.8 334 65.6
Gohir.D07G156600 Gossypium hirsutum HOM05D006470 ORTHO05D007978 1.5e-56 224.2 317 61.2
Gorai.001G179700 Gossypium raimondii HOM05D006470 ORTHO05D007978 2.0e-56 223.8 317 61.2
Duzib133G1499 Durio zibethinus HOM05D006470 ORTHO05D007978 2.6e-56 223.4 331 66.8
Peaxi162Scf00415g00003 Petunia axillaris HOM05D006470 ORTHO05D007978 2.9e-55 219.9 327 69.4
CiPaw.03G267400 Carya illinoinensis HOM05D006470 ORTHO05D007978 1.1e-54 218.0 335 67.5
FAN24G3268 Fragaria x ananassa HOM05D006470 ORTHO05D007978 1.9e-54 217.2 311 67.2
Manes.13G036500 Manihot esculenta HOM05D006470 ORTHO05D007978 1.9e-54 217.2 337 67.4
Manes.12G034500 Manihot esculenta HOM05D006470 ORTHO05D007978 5.5e-54 215.7 338 66.3
Duzib138G0951 Durio zibethinus HOM05D006470 ORTHO05D007978 1.2e-53 214.5 330 66.1
Dinv22382 Davidia involucrata HOM05D006470 ORTHO05D007978 3.5e-53 213.0 276 65.6
Nitab4.5_0001945g0030 Nicotiana tabacum HOM05D006470 ORTHO05D007978 1.0e-52 211.5 290 73.8
QL09p040137 Quercus lobata HOM05D006470 ORTHO05D007978 1.8e-52 210.7 336 51.8
Oeu039680.1 Olea europaea HOM05D006470 ORTHO05D007978 2.3e-52 210.3 179 62.0
FvH4_2g21070 Fragaria vesca HOM05D006470 ORTHO05D007978 3.9e-52 209.5 313 66.1
MBI10_g13794_MAGBIO Magnolia biondii HOM05D006470 ORTHO05D007978 5.7e-51 205.7 327 67.9
Cpa.g.sc165.30 Carica papaya HOM05D006470 ORTHO05D007978 1.6e-50 204.1 298 70.1
Ca_09663_v3 Cicer arietinum L. HOM05D006470 ORTHO05D007978 2.1e-50 203.8 331 65.3
Hma1.2p1_0273F.1_g109440 Hydrangea macrophylla HOM05D006470 ORTHO05D007978 2.8e-50 203.4 135 70.4
Lj5g0015356 Lotus japonicus HOM05D006470 ORTHO05D007978 2.4e-49 200.3 319 65.2
Aqoxy5G00193 Aquilegia oxysepala HOM05D006470 ORTHO05D007978 2.6e-48 196.8 328 60.7
FAN15G1173 Fragaria x ananassa HOM05D006470 ORTHO05D007978 3.4e-48 196.4 333 63.1
Lsat_1_v5_gn_9_10681 Lactuca sativa HOM05D006470 ORTHO05D007978 3.4e-48 196.4 338 64.2
Nitab4.5_0003295g0060 Nicotiana tabacum HOM05D006470 ORTHO05D007978 4.5e-48 196.1 292 71.9
RcHm_v2.0_Chr6g0287531 Rosa chinensis HOM05D006470 ORTHO05D007978 1.4e-46 191.0 313 66.1
TWI18G0736 Tripterygium wilfordii HOM05D006470 ORTHO05D007978 3.2e-46 189.9 328 64.0
arahy.Tifrunner.gnm1.ann1.NTND9X Arachis hypogaea HOM05D006470 ORTHO05D007978 5.5e-46 189.1 350 59.7
Atru.BG.79.p Acer truncatum HOM05D006470 ORTHO05D007978 1.2e-45 188.0 265 72.8
FAN27G1109 Fragaria x ananassa HOM05D006470 ORTHO05D007978 1.6e-45 187.6 333 59.5
FAN20G2495 Fragaria x ananassa HOM05D006470 ORTHO05D007978 2.7e-45 186.8 333 61.9
Glyma.10G038800 Glycine max HOM05D006470 ORTHO05D007978 6.1e-45 185.7 318 53.8
Sp7g26550 Schrenkiella parvula HOM05D006470 ORTHO05D007978 1.8e-44 184.1 278 60.8
AL7G23980 Arabidopsis lyrata HOM05D006470 ORTHO05D007978 1.5e-43 181.0 269 72.5
Lj2P1147T22 Lonicera japonica HOM05D006470 ORTHO05D007978 3.3e-43 179.9 331 62.5
MD10G1180100 Malus domestica HOM05D006470 ORTHO05D007978 9.7e-43 178.3 310 50.0
Rhsim13G0037300 Rhododendron simsii HOM05D006470 ORTHO05D007978 9.7e-43 178.3 330 63.0
Thhalv10027034m.g Eutrema salsugineum HOM05D006470 ORTHO05D007978 2.2e-42 177.2 324 46.0
Phvul.007G191000 Phaseolus vulgaris HOM05D006470 ORTHO05D007978 2.2e-42 177.2 305 62.0
Solyc09g072630.3 Solanum lycopersicum HOM05D006470 ORTHO05D007978 1.1e-41 174.9 148 60.1
CARHR236350 Cardamine hirsuta HOM05D006470 ORTHO05D007978 1.8e-41 174.1 280 66.8
Aa31LG2G21810 Aethionema arabicum HOM05D006470 ORTHO05D007978 6.9e-41 172.2 325 52.3
Psat6g062280 Pisum sativum HOM05D006470 ORTHO05D007978 9.0e-41 171.8 334 58.1
TWI12G0101 Tripterygium wilfordii HOM05D006470 ORTHO05D007978 1.5e-40 171.0 328 60.7
SGA_v2.0_scaffold1G00631 Striga asiatica HOM05D006470 ORTHO05D007978 3.4e-40 169.9 324 46.6
CSS0034739 Camellia sinensis var. sinensis HOM05D006470 ORTHO05D007978 5.9e-40 169.1 325 63.1
VMungo0720G2572 Vigna mungo HOM05D006470 ORTHO05D007978 2.2e-39 167.2 299 65.2
SHI26693 Sapria himalayana HOM05D006470 ORTHO05D007978 2.9e-39 166.8 155 52.9
Potri.005G227600 Populus trichocarpa HOM05D006470 ORTHO05D007978 5.0e-39 166.0 329 61.4
Actinidia37529 Actinidia chinensis HOM05D006470 ORTHO05D007978 6.5e-39 165.6 327 48.9
CSS0011402 Camellia sinensis var. sinensis HOM05D006470 ORTHO05D007978 1.4e-38 164.5 325 62.5
HanXRQChr10g0280761 Helianthus annuus HOM05D006470 ORTHO05D007978 1.9e-38 164.1 328 62.2
PSO210G2696 Papaver somniferum HOM05D006470 ORTHO05D007978 2.5e-38 163.7 333 61.6
AT4G28560 Arabidopsis thaliana HOM05D006470 ORTHO05D007978 5.5e-38 162.5 269 71.0
Sc05g0003180 Simmondsia chinensis HOM05D006470 ORTHO05D007978 7.2e-38 162.2 326 49.1
AUR62025485 Chenopodium quinoa HOM05D006470 ORTHO05D007978 3.6e-37 159.8 330 47.0
TPR.G29693 Trifolium pratense HOM05D006470 ORTHO05D007978 6.1e-37 159.1 122 61.5
DCAR_012563 Daucus carota HOM05D006470 ORTHO05D007978 7.9e-37 158.7 307 45.9
C01p10920 Brassica napus HOM05D006470 ORTHO05D007978 3.9e-36 156.4 271 56.8
BcaNung04289 Brassica carinata HOM05D006470 ORTHO05D007978 6.7e-36 155.6 324 44.1
EL10Ac7g17624 Beta vulgaris HOM05D006470 ORTHO05D007978 1.1e-35 154.8 222 41.0
Sabra05G0175600 Salix brachista HOM05D006470 ORTHO05D007978 1.5e-35 154.5 328 59.8
BraA01t00881Z Brassica rapa HOM05D006470 ORTHO05D007978 2.5e-35 153.7 258 51.9
A01p09340 Brassica napus HOM05D006470 ORTHO05D007978 9.7e-35 151.8 261 51.7
FAN27G1256 Fragaria x ananassa HOM05D006470 ORTHO05D007978 1.3e-34 151.4 174 50.0
SalBow4G0507 Salvia bowleyana HOM05D006470 ORTHO05D007978 1.7e-34 151.0 318 44.0
PSO832G0066 Papaver somniferum HOM05D006470 ORTHO05D007978 3.1e-33 146.7 308 62.3
BcaC09g51655 Brassica carinata HOM05D006470 ORTHO05D007978 5.3e-33 146.0 271 54.2
BolC1t01056H Brassica oleracea HOM05D006470 ORTHO05D007978 5.3e-33 146.0 271 54.2
Lalb_Chr25g0289891 Lupinus albus HOM05D006470 ORTHO05D007978 5.3e-33 146.0 335 59.1
AUR62008754 Chenopodium quinoa HOM05D006470 ORTHO05D007978 9.1e-33 145.2 288 48.3
Medtr1g069695 Medicago truncatula HOM05D006470 ORTHO05D007978 5.9e-32 142.5 328 55.5
vmacro02686 Vaccinium macrocarpon HOM05D006470 ORTHO05D007978 1.6e-29 134.4 330 58.5
Gohir.A07G150300 Gossypium hirsutum HOM05D006470 ORTHO05D007978 3.6e-29 133.3 317 50.5
BcaNung04688 Brassica carinata HOM05D006470 ORTHO05D007978 1.5e-27 127.9 324 30.9
Oeu052037.1 Olea europaea HOM05D006470 ORTHO05D007978 4.5e-24 116.3 249 46.6
Cc01_g18070 Coffea canephora HOM05D006470 ORTHO05D007978 1.6e-21 107.8 330 52.7
Psat6g062240 Pisum sativum HOM05D006470 ORTHO05D007978 1.3e-18 98.2 299 58.9
Psat6g063200 Pisum sativum HOM05D006470 ORTHO05D007978 4.8e-18 96.3 287 54.7
TAR362G1291 Trochodendron aralioides HOM05D006470 ORTHO05D007978 2.4e-17 94.0 328 54.6
Atru.chr2.1091 Acer truncatum HOM05D006470 ORTHO05D007978 3.5e-16 90.1 87 50.6
ClCG07G001200 Citrullus lanatus HOM05D006470 ORTHO05D007978 6.5e-15 85.9 292 50.3
Prupe.8G220100 Prunus persica HOM05D006470 ORTHO05D007978 8.5e-15 85.5 331 52.3
AT3G25670 Arabidopsis thaliana HOM05D003233 ORTHO05D003694 1.1e-14 85.1 125 41.6
C07p34540 Brassica napus HOM05D003233 ORTHO05D003694 1.5e-14 84.7 137 38.7
BolC7t43985H Brassica oleracea HOM05D003233 ORTHO05D003694 1.5e-14 84.7 137 38.7
BcaC06g33970 Brassica carinata HOM05D003233 ORTHO05D003694 7.2e-14 82.4 138 38.4
Migut.D00451 Erythranthe guttata HOM05D006470 ORTHO05D007978 1.2e-13 81.6 323 40.2
BcaC06g31126 Brassica carinata HOM05D003233 ORTHO05D003694 6.1e-13 79.3 136 37.5
Thhalv10004133m.g Eutrema salsugineum HOM05D003233 ORTHO05D003694 6.1e-13 79.3 152 36.8
AL5G14210 Arabidopsis lyrata HOM05D003233 ORTHO05D003694 8.0e-13 79.0 108 42.6
A06p42610 Brassica napus HOM05D003233 ORTHO05D003694 8.0e-13 79.0 138 37.7
BraA06t27176Z Brassica rapa HOM05D003233 ORTHO05D003694 8.0e-13 79.0 138 37.7
Carub.0005s0349 Capsella rubella HOM05D003233 ORTHO05D003694 8.0e-13 79.0 111 41.4
BolC5t29758H Brassica oleracea HOM05D003233 ORTHO05D003694 1.8e-12 77.8 107 41.1
Sp2g14930 Schrenkiella parvula HOM05D003233 ORTHO05D003694 6.8e-12 75.9 97 43.3
MELO3C012860.2 Cucumis melo HOM05D006470 ORTHO05D007978 2.6e-11 73.9 285 47.7
CARHR013610 Cardamine hirsuta HOM05D003233 ORTHO05D003694 3.4e-11 73.6 95 43.2
Atru.chr9.723 Acer truncatum HOM05D003233 ORTHO05D003694 4.4e-11 73.2 116 37.1
CARHR288530 Cardamine hirsuta HOM05D003233 ORTHO05D003694 1.3e-10 71.6 111 37.8
C05p10120 Brassica napus HOM05D003233 ORTHO05D003694 2.8e-10 70.5 107 40.2
Ciclev10020031m.g Citrus clementina HOM05D006470 ORTHO05D007978 6.3e-10 69.3 336 49.7
Cfa018652 Carpinus fangiana HOM05D003233 ORTHO05D003694 8.3e-10 68.9 93 38.7
ATR0736G105 Amborella trichopoda HOM05D006470 ORTHO05D007978 1.8e-09 67.8 94 37.2
Carub.0001s1296 Capsella rubella HOM05D003233 ORTHO05D003694 1.8e-09 67.8 109 38.5
Nn4g23681 Nelumbo nucifera HOM05D003233 ORTHO05D003694 1.8e-09 67.8 112 36.6
Nn4g24646 Nelumbo nucifera HOM05D003233 ORTHO05D003694 2.4e-09 67.4 111 36.9
A06p08520 Brassica napus HOM05D003233 ORTHO05D003694 5.4e-09 66.2 102 39.2
BraA06t24047Z Brassica rapa HOM05D003233 ORTHO05D003694 5.4e-09 66.2 102 39.2
CDE08G1533 Ceratophyllum demersum HOM05D006470 ORTHO05D007978 9.1e-09 65.5 58 50.0
Cfa002452 Carpinus fangiana HOM05D006470 ORTHO05D007978 1.2e-08 65.1 73 57.5
PSO675G3521 Papaver somniferum HOM05D007391 ORTHO05D009446 2.7e-08 63.9 86 43.0
THA.LOC104814525 Tarenaya hassleriana HOM05D006470 ORTHO05D007978 2.7e-08 63.9 102 38.2
FAN13G0334 Fragaria x ananassa HOM05D003233 ORTHO05D003694 3.5e-08 63.5 106 36.8
Sed0003902 Sechium edule HOM05D006470 ORTHO05D007978 4.5e-08 63.2 300 50.3
Haze_24664 Corylus avellana HOM05D006470 ORTHO05D007978 7.7e-08 62.4 60 55.0
Carub.0007s1211 Capsella rubella HOM05D006470 ORTHO05D007978 1.3e-07 61.6 271 56.1
Dinv24273 Davidia involucrata HOM05D000071 ORTHO05D000029 1.7e-07 61.2 129 31.8
HPP92_012855 Vanilla planifolia HOM05D006470 ORTHO05D007978 1.7e-07 61.2 145 33.1
Potri.008G114700 Populus trichocarpa HOM05D003233 ORTHO05D003694 2.9e-07 60.5 101 36.6
CsaV3_1G004590 Cucumis sativus L. HOM05D000033 ORTHO05D001317 5.0e-07 59.7 172 32.6
Cc11_g13790 Coffea canephora HOM05D003705 ORTHO05D010003 8.5e-07 58.9 99 33.3
AagrBONN_evm.TU.Sc2ySwM_228.4621 Anthoceros agrestis HOM05D000031 ORTHO05D011109 1.5e-06 58.2 158 32.3
Gohir.D11G308150 Gossypium hirsutum HOM05D000071 ORTHO05D000029 1.5e-06 58.2 86 31.4
THA.LOC104824039 Tarenaya hassleriana HOM05D003233 ORTHO05D003694 1.5e-06 58.2 121 30.6
ECA248G1135 Erigeron canadensis HOM05D006470 ORTHO05D007978 1.9e-06 57.8 56 53.6
arahy.Tifrunner.gnm1.ann1.83HZ7F Arachis hypogaea HOM05D000517 ORTHO05D003374 2.5e-06 57.4 105 38.1
arahy.Tifrunner.gnm1.ann1.U7NMZN Arachis hypogaea HOM05D000517 ORTHO05D003374 2.5e-06 57.4 105 38.1
Gorai.007G339000 Gossypium raimondii HOM05D000071 ORTHO05D000029 2.5e-06 57.4 86 31.4
CAN.G866.1 Capsicum annuum HOM05D000021 ORTHO05D000010 3.2e-06 57.0 118 32.2
Solyc05g006670.2 Solanum lycopersicum HOM05D003705 ORTHO05D010003 3.2e-06 57.0 134 31.3
BcaNung04689 Brassica carinata HOM05D006470 ORTHO05D007978 4.2e-06 56.6 55 54.5
CBR_g779 Chara braunii HOM05D001523 ORTHO05D006295 4.2e-06 56.6 99 34.3
Lsat_1_v5_gn_5_182700 Lactuca sativa HOM05D006470 ORTHO05D007978 4.2e-06 56.6 54 53.7
TWI75G1450 Tripterygium wilfordii HOM05D003233 ORTHO05D003694 4.2e-06 56.6 101 36.6
Eucgr.D00672 Eucalyptus grandis HOM05D000071 ORTHO05D000029 5.5e-06 56.2 109 33.9
Prupe.1G264100 Prunus persica HOM05D003705 ORTHO05D010003 5.5e-06 56.2 100 35.0
Glyma.08G048700 Glycine max HOM05D000517 ORTHO05D000751 7.2e-06 55.8 98 37.8
Sopen05g002610 Solanum pennellii HOM05D003705 ORTHO05D010003 7.2e-06 55.8 134 30.6
Aqoxy3G03872 Aquilegia oxysepala HOM05D003233 ORTHO05D003694 9.5e-06 55.5 113 31.9
Lj9A433T93 Lonicera japonica HOM05D003233 ORTHO05D003694 9.5e-06 55.5 93 32.3
QL08p015903 Quercus lobata HOM05D000053 ORTHO05D000448 9.5e-06 55.5 86 38.4
SMO146G0184 Selaginella moellendorffii HOM05D003233 ORTHO05D007978 9.5e-06 55.5 127 32.3


User provided reference genes

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