Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g02852 Nelumbo nucifera HOM05D005357 ORTHO05D006354 3.2e-303 1044.3 518 100.0
TAR633G0560 Trochodendron aralioides HOM05D005357 ORTHO05D006354 5.8e-196 688.0 532 72.0
TAR636G3085 Trochodendron aralioides HOM05D005357 ORTHO05D006354 2.8e-182 642.5 491 71.5
MBI06_g17209_MAGBIO Magnolia biondii HOM05D005357 ORTHO05D006354 2.6e-180 636.0 530 69.2
QL07p036221 Quercus lobata HOM05D005357 ORTHO05D006354 1.2e-172 610.5 520 66.0
CiPaw.09G205000 Carya illinoinensis HOM05D005357 ORTHO05D006354 4.2e-170 602.1 521 64.9
Cfa017262 Carpinus fangiana HOM05D005357 ORTHO05D006354 7.6e-164 581.3 522 64.6
Haze_20938 Corylus avellana HOM05D005357 ORTHO05D006354 2.4e-157 559.7 522 62.8
Aqoxy1G00739 Aquilegia oxysepala HOM05D005357 ORTHO05D006354 4.0e-157 558.9 504 61.5
Dinv37091 Davidia involucrata HOM05D005357 ORTHO05D006354 4.6e-153 545.4 522 61.7
COL.COLO4_14619 Corchorus olitorius HOM05D005357 ORTHO05D006354 2.3e-152 543.1 524 59.4
Thecc.05G023500 Theobroma cacao HOM05D005357 ORTHO05D006354 1.5e-151 540.4 521 58.7
Duzib093G0024 Durio zibethinus HOM05D005357 ORTHO05D006354 2.5e-151 539.7 521 59.1
Hma1.2p1_0703F.1_g206335 Hydrangea macrophylla HOM05D005357 ORTHO05D006354 2.4e-149 533.1 523 59.1
Manes.08G086900 Manihot esculenta HOM05D005357 ORTHO05D006354 4.1e-149 532.3 522 60.9
CANSAT35G1827 Cannabis sativa HOM05D005357 ORTHO05D006354 6.9e-149 531.6 521 60.1
Actinidia13789 Actinidia chinensis HOM05D005357 ORTHO05D006354 4.5e-148 528.9 523 57.4
Potri.006G095600 Populus trichocarpa HOM05D005357 ORTHO05D006354 1.1e-146 524.2 529 59.0
Peaxi162Scf00141g00133 Petunia axillaris HOM05D005357 ORTHO05D006354 1.9e-146 523.5 521 58.5
Ciclev10011563m.g Citrus clementina HOM05D005357 ORTHO05D006354 1.6e-145 520.4 524 57.8
Nitab4.5_0006254g0010 Nicotiana tabacum HOM05D005357 ORTHO05D006354 2.1e-145 520.0 522 58.2
Duzib106G1773 Durio zibethinus HOM05D005357 ORTHO05D006354 2.3e-144 516.5 521 57.4
TWI77G0073 Tripterygium wilfordii HOM05D005357 ORTHO05D006354 6.7e-144 515.0 520 57.9
Actinidia29139 Actinidia chinensis HOM05D005357 ORTHO05D006354 1.5e-143 513.8 523 57.0
Prupe.6G269500 Prunus persica HOM05D005357 ORTHO05D006354 2.4e-141 506.5 504 59.5
ClCG10G021740 Citrullus lanatus HOM05D005357 ORTHO05D006354 3.1e-141 506.1 524 58.0
Gohir.A09G163000 Gossypium hirsutum HOM05D005357 ORTHO05D006354 4.1e-141 505.8 521 57.0
Gohir.D09G158500 Gossypium hirsutum HOM05D005357 ORTHO05D006354 9.1e-141 504.6 521 55.3
Eucgr.B02762 Eucalyptus grandis HOM05D005357 ORTHO05D006354 3.8e-139 499.2 535 56.8
CAN.G284.13 Capsicum annuum HOM05D005357 ORTHO05D006354 5.0e-139 498.8 524 55.3
RcHm_v2.0_Chr3g0463991 Rosa chinensis HOM05D005357 ORTHO05D006354 1.4e-138 497.3 502 57.4
Gorai.006G180200 Gossypium raimondii HOM05D005357 ORTHO05D006354 2.5e-138 496.5 521 55.9
Nitab4.5_0000008g0560 Nicotiana tabacum HOM05D005357 ORTHO05D006354 3.2e-138 496.1 522 56.5
Duzib128G1243 Durio zibethinus HOM05D005357 ORTHO05D006354 7.2e-138 495.0 520 55.0
Cpa.g.sc312.3 Carica papaya HOM05D005357 ORTHO05D006354 2.1e-137 493.4 521 57.4
Cc06_g01760 Coffea canephora HOM05D005357 ORTHO05D006354 1.0e-136 491.1 521 56.8
PSO585G0030 Papaver somniferum HOM05D005357 ORTHO05D006354 2.6e-135 486.5 502 58.2
CsaV3_3G034230 Cucumis sativus L. HOM05D005357 ORTHO05D006354 4.4e-135 485.7 523 56.6
FvH4_6g12190 Fragaria vesca HOM05D005357 ORTHO05D006354 1.7e-134 483.8 503 56.1
FAN09G0023 Fragaria x ananassa HOM05D005357 ORTHO05D006354 1.7e-134 483.8 503 56.1
FAN14G1666 Fragaria x ananassa HOM05D005357 ORTHO05D006354 1.7e-134 483.8 503 56.1
MD12G1159000 Malus domestica HOM05D005357 ORTHO05D006354 1.7e-134 483.8 501 57.1
FAN14G2781 Fragaria x ananassa HOM05D005357 ORTHO05D006354 8.2e-134 481.5 503 55.9
MD04G1145200 Malus domestica HOM05D005357 ORTHO05D006354 1.1e-133 481.1 495 56.6
PSO384G3148 Papaver somniferum HOM05D005357 ORTHO05D006354 1.8e-133 480.3 503 56.9
TWI74G0304 Tripterygium wilfordii HOM05D005357 ORTHO05D006354 4.1e-133 479.2 459 59.3
FAN05G3392 Fragaria x ananassa HOM05D005357 ORTHO05D006354 2.0e-132 476.9 503 55.5
FAN02G3235 Fragaria x ananassa HOM05D005357 ORTHO05D006354 2.9e-131 473.0 476 56.7
Sed0007832 Sechium edule HOM05D005357 ORTHO05D006354 3.7e-126 456.1 438 58.4
Sabra06G0073400 Salix brachista HOM05D005357 ORTHO05D006354 1.6e-124 450.7 625 49.0
MELO3C009198.2 Cucumis melo HOM05D005357 ORTHO05D006354 8.5e-123 444.9 524 53.2
arahy.Tifrunner.gnm1.ann1.H8VZ0K Arachis hypogaea HOM05D005357 ORTHO05D006354 5.5e-122 442.2 517 52.0
arahy.Tifrunner.gnm1.ann1.5ZZ6F4 Arachis hypogaea HOM05D005357 ORTHO05D006354 3.3e-119 433.0 536 50.6
EL10As5g23477 Beta vulgaris HOM05D005357 ORTHO05D006354 4.8e-118 429.1 524 52.3
Glyma.07G144300 Glycine max HOM05D005357 ORTHO05D006354 6.3e-118 428.7 517 51.5
PGR031G1436 Punica granatum HOM05D005357 ORTHO05D006354 1.1e-117 427.9 561 48.8
Lj2A78G31 Lonicera japonica HOM05D005357 ORTHO05D006354 4.1e-117 426.0 522 52.9
vmacro01296 Vaccinium macrocarpon HOM05D005357 ORTHO05D006354 1.0e-115 421.4 522 50.8
MSTRG.5603 Avicennia marina HOM05D005357 ORTHO05D006354 3.8e-115 419.5 523 52.4
Phvul.008G108800 Phaseolus vulgaris HOM05D005357 ORTHO05D006354 7.2e-114 415.2 517 50.3
Gohir.A04G087700 Gossypium hirsutum HOM05D005357 ORTHO05D006354 8.8e-112 408.3 393 58.5
Gorai.012G111100 Gossypium raimondii HOM05D005357 ORTHO05D006354 1.2e-111 407.9 394 58.4
SalBow3G4061 Salvia bowleyana HOM05D005357 ORTHO05D006354 5.7e-111 405.6 522 52.1
Glyma.18G195500 Glycine max HOM05D005357 ORTHO05D006354 4.8e-110 402.5 518 50.2
HPP92_021066 Vanilla planifolia HOM05D005357 ORTHO05D006354 4.8e-110 402.5 522 48.9
Medtr7g066710 Medicago truncatula HOM05D005357 ORTHO05D006354 2.4e-109 400.2 516 50.2
AUR62024704 Chenopodium quinoa HOM05D005357 ORTHO05D006354 5.4e-109 399.1 426 56.3
Dinv03649 Davidia involucrata HOM05D005357 ORTHO05D006354 9.1e-109 398.3 437 56.3
GSVIVG01034021001 Vitis vinifera HOM05D005357 ORTHO05D006354 9.1e-109 398.3 518 47.7
Medtr7g056183 Medicago truncatula HOM05D005357 ORTHO05D006354 4.5e-108 396.0 514 50.2
AUR62011861 Chenopodium quinoa HOM05D005357 ORTHO05D006354 1.0e-107 394.8 413 56.9
PGSC0003DMG402020324 Solanum tuberosum HOM05D005357 ORTHO05D006354 3.2e-106 389.8 521 47.6
Lalb_Chr01g0022881 Lupinus albus HOM05D005357 ORTHO05D006354 1.6e-105 387.5 521 49.9
CSS0020158 Camellia sinensis var. sinensis HOM05D005357 ORTHO05D006354 2.1e-105 387.1 405 57.0
Migut.J00234 Erythranthe guttata HOM05D005357 ORTHO05D006354 4.7e-105 386.0 515 49.7
Lj3g0024478 Lotus japonicus HOM05D005357 ORTHO05D006354 3.0e-104 383.3 519 48.4
Ah.11g049570 Amaranthus hybridus HOM05D005357 ORTHO05D006354 1.5e-103 380.9 525 48.8
Gohir.D04G128100 Gossypium hirsutum HOM05D005357 ORTHO05D006354 7.5e-103 378.6 394 55.8
Hund09607 Selenicereus undatus HOM05D005357 ORTHO05D006354 2.2e-102 377.1 407 55.3
Ca_09168_v3 Cicer arietinum L. HOM05D005357 ORTHO05D006354 2.8e-102 376.7 518 48.1
Sopen09g006960 Solanum pennellii HOM05D005357 ORTHO05D006354 7.0e-101 372.1 521 47.6
TPR.G1557 Trifolium pratense HOM05D005357 ORTHO05D006354 3.5e-100 369.8 423 54.1
CDE04G3126 Ceratophyllum demersum HOM05D005357 ORTHO05D006354 5.0e-99 365.9 473 51.0
SGA_v2.0_scaffold85G26772 Striga asiatica HOM05D005357 ORTHO05D006354 4.3e-98 362.8 477 50.7
Lalb_Chr03g0042941 Lupinus albus HOM05D005357 ORTHO05D006354 4.7e-97 359.4 521 46.6
Hund02920 Selenicereus undatus HOM05D005357 ORTHO05D006354 1.2e-95 354.8 413 52.5
THA.LOC104827038 Tarenaya hassleriana HOM05D005357 ORTHO05D006354 9.8e-95 351.7 443 48.8
DCAR_005589 Daucus carota HOM05D005357 ORTHO05D006354 1.3e-94 351.3 524 46.8
Oeu030537.4 Olea europaea HOM05D005357 ORTHO05D006354 1.8e-88 330.9 470 47.4
Atru.chr8.2135 Acer truncatum HOM05D005357 ORTHO05D006354 5.8e-87 325.9 403 50.1
Sc05g0000650 Simmondsia chinensis HOM05D005357 ORTHO05D006354 1.0e-83 315.1 341 56.3
CDE03G0086 Ceratophyllum demersum HOM05D005357 ORTHO05D006354 6.6e-83 312.4 472 47.0
SGA_v2.0_scaffold75G24995 Striga asiatica HOM05D005357 ORTHO05D006354 1.1e-82 311.6 460 45.9
Aa31LG1G22800 Aethionema arabicum HOM05D005357 ORTHO05D006354 1.2e-81 308.1 518 41.3
Os10g0494500 Oryza sativa ssp. japonica HOM05D005357 ORTHO05D006354 1.2e-81 308.1 449 46.1
PGSC0003DMG400002411 Solanum tuberosum HOM05D005357 ORTHO05D006354 1.6e-81 307.8 404 47.8
Zm00001eb044800 Zea mays HOM05D005357 ORTHO05D006354 8.1e-81 305.4 455 45.3
Carub.0006s0073 Capsella rubella HOM05D005357 ORTHO05D006354 1.8e-80 304.3 392 48.2
CARHR211480 Cardamine hirsuta HOM05D005357 ORTHO05D006354 1.5e-79 301.2 393 47.6
AL6G11040 Arabidopsis lyrata HOM05D005357 ORTHO05D006354 3.2e-77 293.5 396 47.0
Sp6g40520 Schrenkiella parvula HOM05D005357 ORTHO05D006354 7.1e-77 292.4 393 46.6
AT5G01160 Arabidopsis thaliana HOM05D005357 ORTHO05D006354 1.6e-76 291.2 395 47.3
Thhalv10014073m.g Eutrema salsugineum HOM05D005357 ORTHO05D006354 1.7e-75 287.7 389 46.8
HanXRQChr13g0406371 Helianthus annuus HOM05D005357 ORTHO05D006354 4.3e-74 283.1 519 41.4
ECA248G2096 Erigeron canadensis HOM05D005357 ORTHO05D006354 2.4e-72 277.3 522 41.4
A10p33610 Brassica napus HOM05D005357 ORTHO05D006354 3.1e-72 276.9 397 45.3
BcaNung02762 Brassica carinata HOM05D005357 ORTHO05D006354 7.6e-71 272.3 396 45.7
BraA10t45393Z Brassica rapa HOM05D005357 ORTHO05D006354 7.6e-71 272.3 396 44.4
BcaB05g21942 Brassica carinata HOM05D005357 ORTHO05D006354 9.9e-71 271.9 403 44.9
Oeu044369.1 Olea europaea HOM05D005357 ORTHO05D006354 9.9e-71 271.9 440 40.9
BolC9t60186H Brassica oleracea HOM05D005357 ORTHO05D006354 2.2e-70 270.8 405 45.2
C09p74540 Brassica napus HOM05D005357 ORTHO05D006354 4.9e-70 269.6 404 45.0
Psat3g131000 Pisum sativum HOM05D005357 ORTHO05D006354 4.6e-68 263.1 432 42.8
Lsat_1_v5_gn_5_155380 Lactuca sativa HOM05D005357 ORTHO05D006354 5.6e-66 256.1 519 40.3
Zm00001eb221140 Zea mays HOM05D005357 ORTHO05D006354 1.1e-64 251.9 308 50.0
BcaNung02766 Brassica carinata HOM05D005357 ORTHO05D006354 3.1e-64 250.4 412 41.7
VMungo1383G1762 Vigna mungo HOM05D005357 ORTHO05D006354 1.2e-60 238.4 399 43.1
SEGI_31043 Sequoiadendron giganteum HOM05D005357 ORTHO05D006354 8.1e-57 225.7 167 63.5
SHI12776 Sapria himalayana HOM05D005357 ORTHO05D006354 1.1e-56 225.3 426 43.2
HanXRQChr13g0397571 Helianthus annuus HOM05D005357 ORTHO05D006354 2.0e-55 221.1 233 52.4
Solyc09g013120.4 Solanum lycopersicum HOM05D005357 ORTHO05D006354 1.3e-54 218.4 416 40.6
HanXRQChr13g0397921 Helianthus annuus HOM05D005357 ORTHO05D006354 4.9e-54 216.5 268 45.5
ATR0605G041 Amborella trichopoda HOM05D005357 ORTHO05D006354 7.1e-53 212.6 414 40.3
unitig_22.g6590 Utricularia gibba HOM05D005357 ORTHO05D006354 2.4e-48 197.6 291 47.1
DCAR_008325 Daucus carota HOM05D005357 ORTHO05D006354 4.5e-47 193.4 254 45.7
Hma1.2p1_0125F.1_g058510 Hydrangea macrophylla HOM05D005357 ORTHO05D006354 2.6e-39 167.5 400 34.0
Atru.chr8.2134 Acer truncatum HOM05D005357 ORTHO05D006354 2.5e-37 161.0 109 75.2
Mapoly0068s0057 Marchantia polymorpha HOM05D005357 ORTHO05D006354 2.5e-34 151.0 159 47.2
Oeu055280.1 Olea europaea HOM05D005357 ORTHO05D006354 1.5e-31 141.7 230 40.4
Pp3c20_10060 Physcomitrium patens HOM05D005357 ORTHO05D006354 2.0e-31 141.4 322 33.5
SEGI_08495 Sequoiadendron giganteum HOM05D054687 ORTHO05D006354 1.7e-30 138.3 392 32.7
Pp3c23_4130 Physcomitrium patens HOM05D005357 ORTHO05D006354 2.2e-30 137.9 258 34.5
Rhsim01G0256700 Rhododendron simsii HOM05D005357 ORTHO05D004574 8.5e-30 136.0 167 49.1
Glyma.18G195800 Glycine max HOM05D005357 ORTHO05D006354 1.3e-25 122.1 252 37.3
PGSC0003DMG401020324 Solanum tuberosum HOM05D005357 ORTHO05D006354 4.8e-25 120.2 86 73.3
CBR_g24154 Chara braunii HOM05D005357 ORTHO05D006354 1.5e-23 115.2 91 51.6
Pp3c8_18230 Physcomitrium patens HOM05D005357 ORTHO05D006354 2.9e-22 110.9 443 27.5
CSS0030830 Camellia sinensis var. sinensis HOM05D005357 ORTHO05D006354 1.1e-16 92.4 69 71.0
Sopen01g013720 Solanum pennellii HOM05D005357 ORTHO05D006354 7.2e-13 79.7 115 44.3
Oeu020881.1 Olea europaea HOM05D005357 ORTHO05D006354 1.4e-08 65.5 82 50.0


User provided reference genes

Program Settings