Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g02711 Nelumbo nucifera HOM05D006219 ORTHO05D007562 4.3e-184 647.9 336 100.0
TAR633G0272 Trochodendron aralioides HOM05D006219 ORTHO05D007562 2.9e-124 449.1 334 73.4
Potri.013G044900 Populus trichocarpa HOM05D006219 ORTHO05D007562 7.5e-112 407.9 334 67.7
CiPaw.07G078300 Carya illinoinensis HOM05D006219 ORTHO05D007562 3.5e-109 399.1 315 68.3
Haze_04459 Corylus avellana HOM05D006219 ORTHO05D007562 5.0e-108 395.2 315 68.3
Sabra13G0041300 Salix brachista HOM05D006219 ORTHO05D007562 8.6e-108 394.4 335 66.3
Cfa006329 Carpinus fangiana HOM05D006219 ORTHO05D007562 1.5e-107 393.7 315 67.9
Dinv06988 Davidia involucrata HOM05D006219 ORTHO05D007562 5.2e-105 385.2 323 66.9
Prupe.6G348600 Prunus persica HOM05D006219 ORTHO05D007562 1.3e-103 380.6 313 65.8
Cpa.g.sc162.24 Carica papaya HOM05D006219 ORTHO05D007562 1.7e-103 380.2 303 67.7
Thecc.05G275300 Theobroma cacao HOM05D006219 ORTHO05D007562 2.8e-103 379.4 311 66.6
Duzib128G1627 Durio zibethinus HOM05D006219 ORTHO05D007562 6.3e-103 378.3 314 65.9
Atru.chr2.897 Acer truncatum HOM05D006219 ORTHO05D007562 8.3e-103 377.9 296 69.3
Aqoxy5G00261 Aquilegia oxysepala HOM05D006219 ORTHO05D007562 2.4e-102 376.3 330 63.6
CANSAT54G2996 Cannabis sativa HOM05D006219 ORTHO05D007562 4.1e-102 375.6 329 63.2
PGR004G0430 Punica granatum HOM05D006219 ORTHO05D007562 1.6e-101 373.6 320 63.8
Lj2C39T18 Lonicera japonica HOM05D006219 ORTHO05D007562 2.0e-101 373.2 315 64.8
Manes.09G149100 Manihot esculenta HOM05D006219 ORTHO05D007562 5.9e-101 371.7 324 64.5
FAN05G4153 Fragaria x ananassa HOM05D006219 ORTHO05D007562 7.8e-101 371.3 318 65.1
FAN02G1274 Fragaria x ananassa HOM05D006219 ORTHO05D007562 2.9e-100 369.4 315 64.4
QL08p015782 Quercus lobata HOM05D006219 ORTHO05D007562 2.9e-100 369.4 309 67.6
FvH4_6g02280 Fragaria vesca HOM05D006219 ORTHO05D007562 6.6e-100 368.2 312 63.8
TWI36G0216 Tripterygium wilfordii HOM05D006219 ORTHO05D007562 6.6e-100 368.2 313 64.2
FAN05G2712 Fragaria x ananassa HOM05D006219 ORTHO05D007562 1.1e-99 367.5 338 62.7
Actinidia06785 Actinidia chinensis HOM05D006219 ORTHO05D007562 3.3e-99 365.9 333 63.4
QL03p031869 Quercus lobata HOM05D006219 ORTHO05D007562 3.3e-99 365.9 309 67.3
Gorai.013G120100 Gossypium raimondii HOM05D006219 ORTHO05D007562 1.2e-98 364.0 290 66.9
CSS0036761 Camellia sinensis var. sinensis HOM05D006219 ORTHO05D007562 1.6e-98 363.6 338 62.1
Sc06g0004060 Simmondsia chinensis HOM05D006219 ORTHO05D007562 2.8e-98 362.8 331 61.3
Gohir.A13G103800 Gossypium hirsutum HOM05D006219 ORTHO05D007562 6.1e-98 361.7 290 66.6
Gohir.D13G107000 Gossypium hirsutum HOM05D006219 ORTHO05D007562 1.4e-97 360.5 290 66.6
Phvul.L001763 Phaseolus vulgaris HOM05D006219 ORTHO05D007562 1.5e-96 357.1 286 65.7
MD12G1245900 Malus domestica HOM05D006219 ORTHO05D007562 4.4e-96 355.5 335 60.0
ClCG06G009410 Citrullus lanatus HOM05D006219 ORTHO05D007562 1.3e-95 354.0 292 65.4
Glyma.10G166900 Glycine max HOM05D006219 ORTHO05D007562 1.7e-95 353.6 333 61.9
FAN14G1966 Fragaria x ananassa HOM05D006219 ORTHO05D007562 6.4e-95 351.7 289 64.7
FAN14G5007 Fragaria x ananassa HOM05D006219 ORTHO05D007562 1.4e-94 350.5 289 64.7
CsaV3_1G045560 Cucumis sativus L. HOM05D006219 ORTHO05D007562 3.2e-94 349.4 281 65.1
FAN09G4845 Fragaria x ananassa HOM05D006219 ORTHO05D007562 3.2e-94 349.4 269 68.4
PSO210G1007 Papaver somniferum HOM05D006219 ORTHO05D007562 3.0e-92 342.8 331 57.7
VMungo0720G3050 Vigna mungo HOM05D006219 ORTHO05D007562 3.9e-92 342.4 272 68.0
MELO3C024664.2 Cucumis melo HOM05D006219 ORTHO05D007562 8.6e-92 341.3 272 65.1
PSO832G3978 Papaver somniferum HOM05D006219 ORTHO05D007562 1.5e-91 340.5 331 58.0
Lj5g0004576 Lotus japonicus HOM05D006219 ORTHO05D007562 3.3e-91 339.3 289 63.7
Lalb_Chr06g0168341 Lupinus albus HOM05D006219 ORTHO05D007562 4.3e-91 339.0 292 61.6
Ca_10007_v3 Cicer arietinum L. HOM05D006219 ORTHO05D007562 1.4e-89 334.0 315 57.8
AL6G40560 Arabidopsis lyrata HOM05D006219 ORTHO05D007562 3.1e-89 332.8 291 62.2
Medtr1g079870 Medicago truncatula HOM05D006219 ORTHO05D007562 3.1e-89 332.8 267 63.3
C07p40330 Brassica napus HOM05D006219 ORTHO05D007562 1.5e-88 330.5 326 58.0
A06p37950 Brassica napus HOM05D006219 ORTHO05D007562 2.0e-88 330.1 326 58.0
THA.LOC104799246 Tarenaya hassleriana HOM05D006219 ORTHO05D007562 2.0e-88 330.1 293 60.4
Lsat_1_v5_gn_2_107721 Lactuca sativa HOM05D006219 ORTHO05D007562 3.4e-88 329.3 333 58.3
BraA06t26711Z Brassica rapa HOM05D006219 ORTHO05D007562 4.4e-88 328.9 326 57.7
BcaNung02093 Brassica carinata HOM05D006219 ORTHO05D007562 7.5e-88 328.2 326 57.7
BolC7t44567H Brassica oleracea HOM05D006219 ORTHO05D007562 7.5e-88 328.2 326 57.7
BcaNung01728 Brassica carinata HOM05D006219 ORTHO05D007562 2.2e-87 326.6 322 57.5
CARHR185150 Cardamine hirsuta HOM05D006219 ORTHO05D007562 6.4e-87 325.1 288 61.8
AT5G28500 Arabidopsis thaliana HOM05D006219 ORTHO05D007562 8.3e-87 324.7 294 61.9
PGSC0003DMG400028668 Solanum tuberosum HOM05D006219 ORTHO05D007562 2.4e-86 323.2 333 55.6
Thhalv10004236m.g Eutrema salsugineum HOM05D006219 ORTHO05D007562 5.4e-86 322.0 332 55.7
CARHR078740 Cardamine hirsuta HOM05D006219 ORTHO05D007562 7.0e-86 321.6 317 56.2
Carub.0006s2578 Capsella rubella HOM05D006219 ORTHO05D007562 2.1e-85 320.1 276 62.7
HanXRQChr14g0458931 Helianthus annuus HOM05D006219 ORTHO05D007562 6.0e-85 318.5 331 55.0
Sp2g20170 Schrenkiella parvula HOM05D006219 ORTHO05D007562 6.0e-85 318.5 309 57.9
DCAR_030973 Daucus carota HOM05D006219 ORTHO05D007562 1.7e-84 317.0 282 59.6
Aa31LG11G8710 Aethionema arabicum HOM05D006219 ORTHO05D007562 5.1e-84 315.5 288 58.7
Aa31LG5G14970 Aethionema arabicum HOM05D006219 ORTHO05D007562 5.1e-84 315.5 267 61.4
Thhalv10020727m.g Eutrema salsugineum HOM05D006219 ORTHO05D007562 5.1e-84 315.5 315 55.2
Oeu029038.1 Olea europaea HOM05D006219 ORTHO05D007562 5.1e-84 315.5 312 57.1
Sp3g03390 Schrenkiella parvula HOM05D006219 ORTHO05D007562 6.6e-84 315.1 315 55.2
Solyc11g006060.2 Solanum lycopersicum HOM05D006219 ORTHO05D007562 6.6e-84 315.1 339 54.6
AT3G04550 Arabidopsis thaliana HOM05D006219 ORTHO05D007562 1.1e-83 314.3 324 55.9
Sopen11g002000 Solanum pennellii HOM05D006219 ORTHO05D007562 1.1e-83 314.3 333 54.4
Carub.0003s0370 Capsella rubella HOM05D006219 ORTHO05D007562 2.5e-83 313.2 298 58.1
Rhsim05G0175300 Rhododendron simsii HOM05D006219 ORTHO05D007562 9.5e-83 311.2 337 54.6
BraA01t04521Z Brassica rapa HOM05D006219 ORTHO05D007562 1.2e-82 310.8 293 58.0
ECA238G2300 Erigeron canadensis HOM05D006219 ORTHO05D007562 2.8e-82 309.7 271 59.0
AL3G14570 Arabidopsis lyrata HOM05D006219 ORTHO05D007562 3.6e-82 309.3 269 61.3
BcaC09g47795 Brassica carinata HOM05D006219 ORTHO05D007562 3.6e-82 309.3 293 57.7
Peaxi162Scf00120g00021 Petunia axillaris HOM05D006219 ORTHO05D007562 1.1e-81 307.8 339 51.9
BcaB04g21366 Brassica carinata HOM05D006219 ORTHO05D007562 1.4e-81 307.4 312 56.7
HanXRQChr07g0201901 Helianthus annuus HOM05D006219 ORTHO05D007562 1.4e-81 307.4 271 59.4
Sed0012882 Sechium edule HOM05D006219 ORTHO05D007562 1.4e-81 307.4 298 56.7
CAN.G582.15 Capsicum annuum HOM05D006219 ORTHO05D007562 4.0e-81 305.8 331 52.9
BolC1t05743H Brassica oleracea HOM05D006219 ORTHO05D007562 2.0e-80 303.5 298 57.4
CDE05G0955 Ceratophyllum demersum HOM05D006219 ORTHO05D007562 2.0e-80 303.5 284 61.3
AUR62037607 Chenopodium quinoa HOM05D006219 ORTHO05D007562 2.0e-80 303.5 296 56.4
A01p40850 Brassica napus HOM05D006219 ORTHO05D007562 5.8e-80 302.0 294 57.1
BNapus_Darmor_BZH_scaffold_78p00860 Brassica napus HOM05D006219 ORTHO05D007562 5.8e-80 302.0 294 57.1
HPP92_025973 Vanilla planifolia HOM05D006219 ORTHO05D007562 3.7e-79 299.3 298 56.7
CDE08G1514 Ceratophyllum demersum HOM05D006219 ORTHO05D007562 6.4e-79 298.5 321 54.8
DCAR_002178 Daucus carota HOM05D006219 ORTHO05D007562 2.1e-77 293.5 267 59.9
SGA_v2.0_scaffold210G42065 Striga asiatica HOM05D006219 ORTHO05D007562 6.0e-77 292.0 337 54.0
Ah.06g191950 Amaranthus hybridus HOM05D006219 ORTHO05D007562 4.0e-73 279.3 281 54.1
SalBow3G3408 Salvia bowleyana HOM05D006219 ORTHO05D007562 4.0e-73 279.3 332 50.9
Nitab4.5_0000856g0150 Nicotiana tabacum HOM05D006219 ORTHO05D007562 2.6e-72 276.6 336 50.6
Nitab4.5_0010345g0010 Nicotiana tabacum HOM05D006219 ORTHO05D007562 4.4e-72 275.8 337 51.0
Migut.F00810 Erythranthe guttata HOM05D006219 ORTHO05D007562 7.6e-72 275.0 338 50.0
unitig_748.g8683 Utricularia gibba HOM05D006219 ORTHO05D007562 2.2e-71 273.5 270 55.2
Eucgr.H04253 Eucalyptus grandis HOM05D006219 ORTHO05D007562 1.9e-70 270.4 323 53.6
Psat6g143080 Pisum sativum HOM05D006219 ORTHO05D007562 1.3e-68 264.2 224 62.1
Ciclev10027647m.g Citrus clementina HOM05D006219 ORTHO05D007562 5.1e-68 262.3 227 62.1
RcHm_v2.0_Chr3g0450031 Rosa chinensis HOM05D006219 ORTHO05D007562 4.3e-67 259.2 210 65.2
Zm00001eb066000 Zea mays HOM05D006219 ORTHO05D007562 2.2e-63 246.9 280 50.7
EL10Ac4g09057 Beta vulgaris HOM05D006219 ORTHO05D007562 3.8e-63 246.1 253 52.6
MBI18_g37358_MAGBIO Magnolia biondii HOM05D006219 ORTHO05D007562 4.9e-63 245.7 295 51.5
ATR0680G103 Amborella trichopoda HOM05D006219 ORTHO05D007562 1.1e-62 244.6 331 50.5
Os10g0445600 Oryza sativa ssp. japonica HOM05D006219 ORTHO05D007562 1.2e-61 241.1 286 50.7
Lalb_Chr18g0044051 Lupinus albus HOM05D006219 ORTHO05D007562 1.5e-59 234.2 244 54.1
Hma1.2p1_1227F.1_g268570 Hydrangea macrophylla HOM05D006219 ORTHO05D007562 1.3e-58 231.1 219 61.2
AUR62004874 Chenopodium quinoa HOM05D006219 ORTHO05D007562 6.2e-58 228.8 226 56.6
vmacro20002 Vaccinium macrocarpon HOM05D006219 ORTHO05D007562 9.0e-57 224.9 231 56.7
TPR.G10266 Trifolium pratense HOM05D006219 ORTHO05D007562 2.7e-53 213.4 294 47.3
SEGI_10874 Sequoiadendron giganteum HOM05D006219 ORTHO05D007562 1.1e-51 208.0 257 49.4
Pp3c18_4320 Physcomitrium patens HOM05D006219 ORTHO05D007562 1.0e-44 184.9 264 42.8
AagrBONN_evm.TU.Sc2ySwM_117.503 Anthoceros agrestis HOM05D006219 ORTHO05D007562 2.5e-43 180.3 262 44.3
Mapoly0001s0431 Marchantia polymorpha HOM05D006219 ORTHO05D007562 4.3e-43 179.5 276 42.0
CBR_g29314 Chara braunii HOM05D006219 ORTHO05D007562 2.6e-40 170.2 271 41.0
Glyma.20G222200 Glycine max HOM05D006219 ORTHO05D007562 9.3e-38 161.8 136 66.9
MBI18_g32212_MAGBIO Magnolia biondii HOM05D006219 ORTHO05D007562 1.9e-35 154.1 335 40.3
MD04G1228600 Malus domestica HOM05D006219 ORTHO05D007562 9.1e-25 118.6 109 58.7
AagrBONN_evm.TU.Sc2ySwM_228.3126 Anthoceros agrestis HOM05D006219 ORTHO05D007562 1.7e-23 114.4 280 35.0
Cre06.g308450 Chlamydomonas reinhardtii HOM05D006219 ORTHO05D007562 1.1e-22 111.7 290 32.4
Glyma.15G246700 Glycine max HOM05D001461 ORTHO05D005534 1.1e-19 101.7 75 68.0
SMO137G0122 Selaginella moellendorffii HOM05D006219 ORTHO05D007562 1.1e-19 101.7 164 39.6
Pp3c16_6440 Physcomitrium patens HOM05D006219 ORTHO05D007562 1.4e-17 94.7 218 33.5
Mapoly4350s0001 Marchantia polymorpha HOM05D006219 ORTHO05D007562 3.8e-15 86.7 146 38.4
TAR362G0073 Trochodendron aralioides HOM05D001652 ORTHO05D001768 7.2e-14 82.4 84 54.8
MCO04G553 Micromonas commoda HOM05D006219 ORTHO05D007562 2.1e-13 80.9 210 31.0
PRCOL_00003529 Prasinoderma coloniale HOM05D006219 ORTHO05D007562 1.8e-12 77.8 277 30.0


User provided reference genes

Program Settings