Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g02552 Nelumbo nucifera HOM05D004338 ORTHO05D005205 1.1e-138 496.5 238 100.0
TAR365G0259 Trochodendron aralioides HOM05D004338 ORTHO05D005205 9.2e-48 194.5 213 49.8
TAR636G0266 Trochodendron aralioides HOM05D004338 ORTHO05D005205 1.2e-47 194.1 228 49.1
PSO210G3643 Papaver somniferum HOM05D004338 ORTHO05D005205 2.2e-41 173.3 224 45.5
PSO238G0023 Papaver somniferum HOM05D004338 ORTHO05D005205 1.7e-38 163.7 224 43.8
Dinv44613 Davidia involucrata HOM05D004338 ORTHO05D005205 3.1e-35 152.9 219 42.5
Dinv14075 Davidia involucrata HOM05D004338 ORTHO05D005205 4.2e-32 142.5 207 39.1
Thecc.04G243900 Theobroma cacao HOM05D004338 ORTHO05D005205 2.7e-31 139.8 174 42.0
GSVIVG01018095001 Vitis vinifera HOM05D004338 ORTHO05D005205 2.7e-31 139.8 208 40.9
Aqoxy2G03524 Aquilegia oxysepala HOM05D004338 ORTHO05D005205 1.0e-30 137.9 211 37.4
Atru.chr4.2282 Acer truncatum HOM05D004338 ORTHO05D005205 3.9e-30 136.0 230 37.4
Ciclev10004298m.g Citrus clementina HOM05D004338 ORTHO05D005205 3.9e-30 136.0 216 38.4
Prupe.1G027100 Prunus persica HOM05D004338 ORTHO05D005205 4.7e-28 129.0 213 37.1
Potri.010G078600 Populus trichocarpa HOM05D004338 ORTHO05D005205 1.1e-27 127.9 220 39.1
Actinidia40096 Actinidia chinensis HOM05D004338 ORTHO05D005205 1.8e-27 127.1 218 37.6
TWI09G1436 Tripterygium wilfordii HOM05D004338 ORTHO05D005205 1.8e-27 127.1 195 37.4
MD16G1206000 Malus domestica HOM05D004338 ORTHO05D005205 3.1e-27 126.3 192 39.1
Manes.03G170100 Manihot esculenta HOM05D004338 ORTHO05D005205 3.1e-27 126.3 216 38.4
MD13G1204000 Malus domestica HOM05D004338 ORTHO05D005205 6.9e-27 125.2 192 39.1
SalBow2G1414 Salvia bowleyana HOM05D004338 ORTHO05D005205 2.0e-26 123.6 216 38.4
Gohir.D10G152700 Gossypium hirsutum HOM05D004338 ORTHO05D005205 7.6e-26 121.7 190 37.4
Haze_11270 Corylus avellana HOM05D004338 ORTHO05D005205 9.9e-26 121.3 216 33.8
COL.COLO4_15767 Corchorus olitorius HOM05D004338 ORTHO05D005205 1.3e-25 120.9 160 42.5
Gorai.011G170600 Gossypium raimondii HOM05D004338 ORTHO05D005205 1.3e-25 120.9 190 37.4
Sabra10G0064800 Salix brachista HOM05D004338 ORTHO05D005205 2.9e-25 119.8 218 35.3
Aqoxy102s001 Aquilegia oxysepala HOM05D004338 ORTHO05D005205 4.9e-25 119.0 100 53.0
PGR142G2602 Punica granatum HOM05D004338 ORTHO05D005205 8.4e-25 118.2 107 49.5
Migut.G00416 Erythranthe guttata HOM05D004338 ORTHO05D005205 1.4e-24 117.5 212 36.8
Glyma.20G210700 Glycine max HOM05D004338 ORTHO05D005205 1.4e-24 117.5 213 37.6
Potri.008G160700 Populus trichocarpa HOM05D004338 ORTHO05D005205 4.2e-24 115.9 213 35.7
QL06p015078 Quercus lobata HOM05D004338 ORTHO05D005205 5.4e-24 115.5 101 55.4
Lalb_Chr02g0150011 Lupinus albus HOM05D004338 ORTHO05D005205 2.1e-23 113.6 218 37.6
Duzib151G0366 Durio zibethinus HOM05D004338 ORTHO05D005205 2.7e-23 113.2 111 49.5
Gohir.D09G224200 Gossypium hirsutum HOM05D004338 ORTHO05D005205 7.8e-23 111.7 228 34.2
Gohir.D09G056400 Gossypium hirsutum HOM05D004338 ORTHO05D005205 1.3e-22 110.9 238 31.5
Gorai.006G070000 Gossypium raimondii HOM05D004338 ORTHO05D005205 1.3e-22 110.9 238 31.5
Lsat_1_v5_gn_5_67480 Lactuca sativa HOM05D004338 ORTHO05D005205 1.3e-22 110.9 218 33.5
Sabra08G0122500 Salix brachista HOM05D004338 ORTHO05D005205 1.3e-22 110.9 96 57.3
Gohir.A09G057200 Gossypium hirsutum HOM05D004338 ORTHO05D005205 1.7e-22 110.5 238 31.5
arahy.Tifrunner.gnm1.ann1.5I9I5Q Arachis hypogaea HOM05D004338 ORTHO05D005205 3.0e-22 109.8 192 34.9
DCAR_002355 Daucus carota HOM05D004338 ORTHO05D005205 3.0e-22 109.8 232 32.8
Gorai.006G245700 Gossypium raimondii HOM05D004338 ORTHO05D005205 3.0e-22 109.8 228 33.8
arahy.Tifrunner.gnm1.ann1.EA06G0 Arachis hypogaea HOM05D004338 ORTHO05D005205 5.1e-22 109.0 192 35.9
CSS0020604 Camellia sinensis var. sinensis HOM05D004338 ORTHO05D005205 5.1e-22 109.0 107 54.2
Eucgr.H00218 Eucalyptus grandis HOM05D004338 ORTHO05D005205 5.1e-22 109.0 99 49.5
HanXRQChr12g0381191 Helianthus annuus HOM05D004338 ORTHO05D005205 5.1e-22 109.0 206 32.0
Gohir.A10G114400 Gossypium hirsutum HOM05D004338 ORTHO05D005205 1.1e-21 107.8 113 47.8
CSS0020548 Camellia sinensis var. sinensis HOM05D004338 ORTHO05D005205 1.9e-21 107.1 113 46.9
TWI73G0220 Tripterygium wilfordii HOM05D004338 ORTHO05D005205 1.9e-21 107.1 212 31.6
Actinidia08449 Actinidia chinensis HOM05D004338 ORTHO05D005205 2.5e-21 106.7 218 31.2
Lj5g0007630 Lotus japonicus HOM05D004338 ORTHO05D005205 2.5e-21 106.7 176 36.4
Phvul.003G138460 Phaseolus vulgaris HOM05D004338 ORTHO05D005205 9.6e-21 104.8 224 33.5
Sc13g0004920 Simmondsia chinensis HOM05D004338 ORTHO05D005205 9.6e-21 104.8 124 44.4
vmacro08400 Vaccinium macrocarpon HOM05D004338 ORTHO05D005205 9.6e-21 104.8 181 34.8
SGA_v2.0_scaffold101G29777 Striga asiatica HOM05D004338 ORTHO05D005205 1.6e-20 104.0 98 52.0
TPR.G14022 Trifolium pratense HOM05D004338 ORTHO05D005205 2.1e-20 103.6 201 33.8
CiPaw.02G117900 Carya illinoinensis HOM05D004338 ORTHO05D005205 4.8e-20 102.4 103 46.6
MD11G1069300 Malus domestica HOM05D004338 ORTHO05D005205 4.8e-20 102.4 192 33.9
FvH4_4g02230 Fragaria vesca HOM05D004338 ORTHO05D005205 6.2e-20 102.1 197 36.0
Rhsim04G0194700 Rhododendron simsii HOM05D004338 ORTHO05D005205 6.2e-20 102.1 100 53.0
CANSAT78G1672 Cannabis sativa HOM05D004338 ORTHO05D005205 1.4e-19 100.9 112 48.2
Cfa008398 Carpinus fangiana HOM05D004338 ORTHO05D005205 1.8e-19 100.5 92 50.0
Glyma.10G179700 Glycine max HOM05D004338 ORTHO05D005205 1.8e-19 100.5 230 34.3
RcHm_v2.0_Chr4g0389551 Rosa chinensis HOM05D004338 ORTHO05D005205 3.1e-19 99.8 191 34.6
ECA233G2689 Erigeron canadensis HOM05D004338 ORTHO05D005205 9.0e-19 98.2 106 45.3
Nitab4.5_0004203g0030 Nicotiana tabacum HOM05D004338 ORTHO05D005205 2.0e-18 97.1 99 47.5
Psat6g113560 Pisum sativum HOM05D004338 ORTHO05D005205 3.4e-18 96.3 129 39.5
RcHm_v2.0_Chr4g0389561 Rosa chinensis HOM05D004338 ORTHO05D005205 3.4e-18 96.3 194 33.5
CARHR179740 Cardamine hirsuta HOM05D004338 ORTHO05D005205 4.5e-18 95.9 103 47.6
MELO3C006480.2 Cucumis melo HOM05D004338 ORTHO05D005205 5.8e-18 95.5 203 33.5
CAN.G626.12 Capsicum annuum HOM05D004338 ORTHO05D005205 1.3e-17 94.4 117 42.7
AUR62000438 Chenopodium quinoa HOM05D004338 ORTHO05D005205 1.7e-17 94.0 108 49.1
VMungo0720G2420 Vigna mungo HOM05D004338 ORTHO05D005205 2.2e-17 93.6 87 51.7
Ca_09879_v3 Cicer arietinum L. HOM05D004338 ORTHO05D005205 2.9e-17 93.2 93 48.4
AUR62006783 Chenopodium quinoa HOM05D004338 ORTHO05D005205 4.9e-17 92.4 108 49.1
FAN22G2191 Fragaria x ananassa HOM05D004338 ORTHO05D005205 8.4e-17 91.7 92 48.9
FAN12G0347 Fragaria x ananassa HOM05D004338 ORTHO05D005205 1.1e-16 91.3 92 48.9
MSTRG.21887 Avicennia marina HOM05D004338 ORTHO05D005205 1.4e-16 90.9 101 45.5
ClCG05G004690 Citrullus lanatus HOM05D004338 ORTHO05D005205 1.9e-16 90.5 80 50.0
Peaxi162Scf01416g00020 Petunia axillaris HOM05D004338 ORTHO05D005205 1.9e-16 90.5 98 45.9
Aa31LG5G3510 Aethionema arabicum HOM05D004338 ORTHO05D005205 3.2e-16 89.7 94 48.9
A02p27940 Brassica napus HOM05D004338 ORTHO05D005205 3.2e-16 89.7 91 45.1
BraA02t07831Z Brassica rapa HOM05D004338 ORTHO05D005205 3.2e-16 89.7 91 45.1
Medtr1g076330 Medicago truncatula HOM05D004338 ORTHO05D005205 3.2e-16 89.7 88 47.7
BolC2t10456H Brassica oleracea HOM05D004338 ORTHO05D005205 4.2e-16 89.4 91 45.1
CsaV3_3G012690 Cucumis sativus L. HOM05D004338 ORTHO05D005205 4.2e-16 89.4 89 49.4
Solyc09g083260.4 Solanum lycopersicum HOM05D004338 ORTHO05D005205 4.2e-16 89.4 117 38.5
CDE03G0177 Ceratophyllum demersum HOM05D004338 ORTHO05D005205 5.4e-16 89.0 175 34.3
Thhalv10003159m.g Eutrema salsugineum HOM05D004338 ORTHO05D005205 5.4e-16 89.0 82 53.7
Sopen09g032180 Solanum pennellii HOM05D004338 ORTHO05D005205 7.1e-16 88.6 98 41.8
BcaC03g16592 Brassica carinata HOM05D004338 ORTHO05D005205 1.2e-15 87.8 91 45.1
C02p44140 Brassica napus HOM05D004338 ORTHO05D005205 1.2e-15 87.8 91 45.1
Lalb_Chr03g0037911 Lupinus albus HOM05D004338 ORTHO05D005205 1.2e-15 87.8 99 44.4
EL10Ac4g09514 Beta vulgaris HOM05D004338 ORTHO05D005205 2.7e-15 86.7 124 42.7
Sed0024916 Sechium edule HOM05D004338 ORTHO05D005205 2.7e-15 86.7 85 49.4
BcaB07g30561 Brassica carinata HOM05D004338 ORTHO05D005205 1.0e-14 84.7 109 42.2
Sp2g08530 Schrenkiella parvula HOM05D004338 ORTHO05D005205 1.8e-14 84.0 103 43.7
Gohir.A09G222100 Gossypium hirsutum HOM05D004338 ORTHO05D005205 6.7e-14 82.0 72 52.8
AT5G43745 Arabidopsis thaliana HOM05D004338 ORTHO05D005205 1.5e-13 80.9 153 35.3
arahy.Tifrunner.gnm1.ann1.1TW0Z8 Arachis hypogaea HOM05D004338 ORTHO05D005205 3.3e-13 79.7 162 32.1
ATR0665G279 Amborella trichopoda HOM05D004338 ORTHO05D005205 1.3e-12 77.8 175 30.9
RcHm_v2.0_Chr4g0389571 Rosa chinensis HOM05D004338 ORTHO05D005205 1.3e-12 77.8 92 44.6
AL37U10030 Arabidopsis lyrata HOM05D004338 ORTHO05D005205 1.6e-12 77.4 146 36.3
AL8G16460 Arabidopsis lyrata HOM05D000589 ORTHO05D000401 3.7e-12 76.3 90 44.4
arahy.Tifrunner.gnm1.ann1.A4GDND Arachis hypogaea HOM05D004338 ORTHO05D005205 3.1e-11 73.2 128 33.6
Carub.0008s0490 Capsella rubella HOM05D004338 ORTHO05D005205 3.1e-11 73.2 94 40.4
MBI04_g44053_MAGBIO Magnolia biondii HOM05D004338 ORTHO05D005205 9.0e-11 71.6 48 64.6
Cc00_g20710 Coffea canephora HOM05D004338 ORTHO05D005205 1.2e-10 71.2 50 62.0
Os03g0163100 Oryza sativa ssp. japonica HOM05D004338 ORTHO05D005205 1.1e-08 64.7 64 42.2
Cpa.g.sc58.22 Carica papaya HOM05D004338 ORTHO05D005205 1.4e-08 64.3 44 63.6
Zm00001eb004780 Zea mays HOM05D004338 ORTHO05D005205 1.2e-07 61.2 81 38.3
Hund21850 Selenicereus undatus HOM05D004338 ORTHO05D005205 2.1e-07 60.5 92 41.3
BolC8t51609H Brassica oleracea HOM05D004338 ORTHO05D005205 1.0e-06 58.2 103 34.0
BraA09t41125Z Brassica rapa HOM05D004338 ORTHO05D005205 1.0e-06 58.2 103 34.0
BcaC07g41038 Brassica carinata HOM05D004338 ORTHO05D005205 1.3e-06 57.8 90 36.7
A09p57320 Brassica napus HOM05D004338 ORTHO05D005205 1.3e-06 57.8 90 36.7
C08p40410 Brassica napus HOM05D004338 ORTHO05D005205 1.3e-06 57.8 90 36.7
AT5G02940 Arabidopsis thaliana HOM05D004338 ORTHO05D005205 1.8e-06 57.4 83 37.3
BcaB08g35114 Brassica carinata HOM05D004338 ORTHO05D005205 1.8e-06 57.4 90 36.7
AL6G12230 Arabidopsis lyrata HOM05D004338 ORTHO05D005205 2.3e-06 57.0 83 37.3


User provided reference genes

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