Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g02464 Nelumbo nucifera HOM05D000159 ORTHO05D005481 1.6e-15 84.7 38 100.0
Nn3g17191 Nelumbo nucifera HOM05D000159 ORTHO05D005481 3.1e-14 80.5 38 97.4
Actinidia15546 Actinidia chinensis HOM05D000159 ORTHO05D005481 2.1e-10 67.8 38 78.9
vmacro21741 Vaccinium macrocarpon HOM05D000159 ORTHO05D005481 3.5e-10 67.0 38 73.7
CSS0029066 Camellia sinensis var. sinensis HOM05D000159 ORTHO05D005481 6.0e-10 66.2 38 76.3
Actinidia05499 Actinidia chinensis HOM05D000159 ORTHO05D005481 7.9e-10 65.9 38 76.3
Actinidia17093 Actinidia chinensis HOM05D000159 ORTHO05D005481 7.9e-10 65.9 38 76.3
Atru.chr13.26 Acer truncatum HOM05D000159 ORTHO05D005481 1.8e-09 64.7 39 74.4
CiPaw.08G078500 Carya illinoinensis HOM05D000159 ORTHO05D005481 1.8e-09 64.7 39 74.4
Nn6g31582 Nelumbo nucifera HOM05D000159 ORTHO05D005481 1.8e-09 64.7 39 79.5
Dinv08297 Davidia involucrata HOM05D000159 ORTHO05D005481 2.3e-09 64.3 39 76.9
MBI04_g11521_MAGBIO Magnolia biondii HOM05D000159 ORTHO05D005481 3.0e-09 63.9 38 73.7
CsaV3_4G037760 Cucumis sativus L. HOM05D000159 ORTHO05D005481 3.9e-09 63.5 39 71.8
TAR381G1337 Trochodendron aralioides HOM05D000159 ORTHO05D005481 5.1e-09 63.2 39 76.9
ClCG11G019160 Citrullus lanatus HOM05D000159 ORTHO05D005481 6.7e-09 62.8 39 71.8
MELO3C017069.2 Cucumis melo HOM05D000159 ORTHO05D005481 6.7e-09 62.8 39 71.8
TAR628G0108 Trochodendron aralioides HOM05D000159 ORTHO05D005481 6.7e-09 62.8 38 71.1
TAR628G0400 Trochodendron aralioides HOM05D000159 ORTHO05D005481 6.7e-09 62.8 38 71.1
CSS0046542 Camellia sinensis var. sinensis HOM05D000159 ORTHO05D005481 1.1e-08 62.0 38 71.1
Ciclev10000100m.g Citrus clementina HOM05D000159 ORTHO05D005481 1.1e-08 62.0 39 71.8
PSO017G6822 Papaver somniferum HOM05D000159 ORTHO05D005481 1.1e-08 62.0 39 71.8
PSO170G5511 Papaver somniferum HOM05D000159 ORTHO05D005481 1.1e-08 62.0 39 71.8
Ca_25724_v3 Cicer arietinum L. HOM05D000159 ORTHO05D005481 1.5e-08 61.6 39 71.8
TAR625G1544 Trochodendron aralioides HOM05D000159 ORTHO05D005481 1.9e-08 61.2 39 74.4
Cpa.g.sc36.105 Carica papaya HOM05D000159 ORTHO05D005481 2.5e-08 60.8 39 69.2
Cfa014160 Carpinus fangiana HOM05D000159 ORTHO05D005481 2.5e-08 60.8 39 69.2
Haze_22882 Corylus avellana HOM05D000159 ORTHO05D005481 2.5e-08 60.8 39 69.2
Potri.002G002400 Populus trichocarpa HOM05D000159 ORTHO05D005481 2.5e-08 60.8 39 69.2
Rhsim06G0001400 Rhododendron simsii HOM05D000159 ORTHO05D005481 2.5e-08 60.8 38 68.4
Hund01812 Selenicereus undatus HOM05D000159 ORTHO05D005481 2.5e-08 60.8 39 74.4
Aqoxy5G00946 Aquilegia oxysepala HOM05D000159 ORTHO05D005481 3.3e-08 60.5 39 64.1
Psat6g132240 Pisum sativum HOM05D000159 ORTHO05D005481 3.3e-08 60.5 39 66.7
Duzib116G0503 Durio zibethinus HOM05D000159 ORTHO05D005481 4.3e-08 60.1 38 65.8
AUR62035190 Chenopodium quinoa HOM05D000159 ORTHO05D005481 5.7e-08 59.7 39 66.7
Hma1.2p1_0810F.1_g221970 Hydrangea macrophylla HOM05D000159 ORTHO05D005481 5.7e-08 59.7 38 71.1
MD06G1001500 Malus domestica HOM05D000159 ORTHO05D005481 5.7e-08 59.7 38 65.8
Medtr1g035010 Medicago truncatula HOM05D000159 ORTHO05D005481 5.7e-08 59.7 39 69.2
Duzib093G0926 Durio zibethinus HOM05D000159 ORTHO05D005481 7.4e-08 59.3 39 69.2
MBI04_g36949_MAGBIO Magnolia biondii HOM05D000159 ORTHO05D005481 7.4e-08 59.3 39 71.8
MD00G1031600 Malus domestica HOM05D000159 ORTHO05D005481 7.4e-08 59.3 38 65.8
Potri.005G258700 Populus trichocarpa HOM05D000159 ORTHO05D005481 7.4e-08 59.3 39 66.7
Ah.11g042240 Amaranthus hybridus HOM05D000159 ORTHO05D005481 9.6e-08 58.9 39 71.8
Gohir.D01G086600 Gossypium hirsutum HOM05D000159 ORTHO05D005481 9.6e-08 58.9 39 66.7
Gorai.002G112200 Gossypium raimondii HOM05D000159 ORTHO05D005481 9.6e-08 58.9 39 66.7
MBI01_g12595_MAGBIO Magnolia biondii HOM05D000159 ORTHO05D005481 9.6e-08 58.9 39 69.2
GSVIVG01013452001 Vitis vinifera HOM05D000159 ORTHO05D005481 9.6e-08 58.9 38 71.1
COL.COLO4_12281 Corchorus olitorius HOM05D000159 ORTHO05D005481 1.3e-07 58.5 39 69.2
Lj2g0019207 Lotus japonicus HOM05D000159 ORTHO05D005481 1.3e-07 58.5 39 66.7
HanXRQChr16g0512241 Helianthus annuus HOM05D000159 ORTHO05D005481 1.6e-07 58.2 39 66.7
QL02p016115 Quercus lobata HOM05D000159 ORTHO05D005481 1.6e-07 58.2 39 66.7
Glyma.07G159300 Glycine max HOM05D000159 ORTHO05D005481 2.1e-07 57.8 39 66.7
Glyma.20G006400 Glycine max HOM05D000159 ORTHO05D005481 2.1e-07 57.8 39 66.7
Lsat_1_v5_gn_9_48121 Lactuca sativa HOM05D000159 ORTHO05D005481 2.1e-07 57.8 43 62.8
PGR083G0105 Punica granatum HOM05D000159 ORTHO05D005481 2.1e-07 57.8 39 66.7
FAN04G1797 Fragaria x ananassa HOM05D000159 ORTHO05D005481 2.8e-07 57.4 38 68.4
Gohir.A01G101500 Gossypium hirsutum HOM05D000159 ORTHO05D005481 2.8e-07 57.4 39 64.1
TWI12G0379 Tripterygium wilfordii HOM05D000159 ORTHO05D005481 2.8e-07 57.4 39 66.7
ECA232G1263 Erigeron canadensis HOM05D000159 ORTHO05D005481 3.7e-07 57.0 39 66.7
FAN08G0650 Fragaria x ananassa HOM05D000159 ORTHO05D005481 3.7e-07 57.0 38 68.4
FAN13G1465 Fragaria x ananassa HOM05D000159 ORTHO05D005481 3.7e-07 57.0 38 68.4
Sabra02G0001600 Salix brachista HOM05D000159 ORTHO05D005481 3.7e-07 57.0 39 66.7
Sed0021984 Sechium edule HOM05D000159 ORTHO05D005481 3.7e-07 57.0 38 63.2
TWI36G0531 Tripterygium wilfordii HOM05D000159 ORTHO05D005481 3.7e-07 57.0 39 64.1
FAN18G1185 Fragaria x ananassa HOM05D000159 ORTHO05D005481 4.8e-07 56.6 38 65.8
Manes.05G130100 Manihot esculenta HOM05D000159 ORTHO05D005481 4.8e-07 56.6 39 64.1
Phvul.003G008800 Phaseolus vulgaris HOM05D000159 ORTHO05D005481 4.8e-07 56.6 39 64.1
Prupe.5G002300 Prunus persica HOM05D000159 ORTHO05D005481 4.8e-07 56.6 38 68.4
RcHm_v2.0_Chr7g0217411 Rosa chinensis HOM05D000159 ORTHO05D005481 4.8e-07 56.6 38 68.4
TPR.G22370 Trifolium pratense HOM05D000159 ORTHO05D005481 4.8e-07 56.6 39 61.5
Cc10_g00120 Coffea canephora HOM05D000159 ORTHO05D005481 6.2e-07 56.2 39 64.1
Oeu035778.1 Olea europaea HOM05D000159 ORTHO05D005481 6.2e-07 56.2 39 64.1
Sabra05G0200300 Salix brachista HOM05D000159 ORTHO05D005481 6.2e-07 56.2 39 66.7
CANSAT25G0274 Cannabis sativa HOM05D000159 ORTHO05D005481 8.2e-07 55.8 39 69.2
TWI56G0907 Tripterygium wilfordii HOM05D000159 ORTHO05D005481 8.2e-07 55.8 39 64.1
Oeu064741.1 Olea europaea HOM05D000159 ORTHO05D005481 1.1e-06 55.5 39 64.1
SalBow7G3511 Salvia bowleyana HOM05D000159 ORTHO05D005481 1.1e-06 55.5 39 64.1
THA.LOC104809963 Tarenaya hassleriana HOM05D000159 ORTHO05D005481 1.1e-06 55.5 39 61.5
Thecc.08G098100 Theobroma cacao HOM05D000159 ORTHO05D005481 1.1e-06 55.5 39 64.1
Aa31LG7G5160 Aethionema arabicum HOM05D000159 ORTHO05D005481 1.4e-06 55.1 39 64.1
Lj4A3T62 Lonicera japonica HOM05D000159 ORTHO05D005481 1.4e-06 55.1 39 64.1
VMungo1215G0262 Vigna mungo HOM05D000159 ORTHO05D005481 2.4e-06 54.3 39 61.5
arahy.Tifrunner.gnm1.ann1.NWS29J Arachis hypogaea HOM05D000159 ORTHO05D005481 3.1e-06 53.9 39 61.5
SGA_v2.0_scaffold26G11272 Striga asiatica HOM05D000159 ORTHO05D005481 4.0e-06 53.5 40 62.5
arahy.Tifrunner.gnm1.ann1.W5ECAN Arachis hypogaea HOM05D000159 ORTHO05D005481 5.3e-06 53.1 39 61.5
BcaC05g26006 Brassica carinata HOM05D000159 ORTHO05D005481 9.0e-06 52.4 38 65.8
A06p17020 Brassica napus HOM05D000159 ORTHO05D005481 9.0e-06 52.4 38 65.8
C05p19650 Brassica napus HOM05D000159 ORTHO05D005481 9.0e-06 52.4 38 65.8
BolC5t30666H Brassica oleracea HOM05D000159 ORTHO05D005481 9.0e-06 52.4 38 65.8
BraA06t24809Z Brassica rapa HOM05D000159 ORTHO05D005481 9.0e-06 52.4 38 65.8
SalBow7G0640 Salvia bowleyana HOM05D000159 ORTHO05D005481 9.0e-06 52.4 39 59.0


User provided reference genes

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