Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g02428 Nelumbo nucifera HOM05D006884 ORTHO05D008604 3.8e-69 264.6 125 100.0
Nn1g02077 Nelumbo nucifera HOM05D006884 ORTHO05D008604 8.2e-56 220.3 110 94.5
Nn3g17897 Nelumbo nucifera HOM05D006884 ORTHO05D008604 1.3e-53 213.0 110 91.8
Nn4g22222 Nelumbo nucifera HOM05D006884 ORTHO05D008604 9.4e-52 206.8 102 94.1
CSS0004159 Camellia sinensis var. sinensis HOM05D006884 ORTHO05D008604 3.3e-49 198.4 103 88.3
QL01p023227 Quercus lobata HOM05D006884 ORTHO05D008604 1.3e-48 196.4 104 86.5
Aqoxy4G03234 Aquilegia oxysepala HOM05D006884 ORTHO05D008604 2.2e-48 195.7 104 86.5
Cc01_g11430 Coffea canephora HOM05D006884 ORTHO05D008604 3.7e-48 194.9 103 87.4
Haze_23897 Corylus avellana HOM05D006884 ORTHO05D008604 1.1e-47 193.4 103 86.4
Rhsim08G0043200 Rhododendron simsii HOM05D006884 ORTHO05D008604 2.4e-47 192.2 103 86.4
Cfa011353 Carpinus fangiana HOM05D006884 ORTHO05D008604 4.1e-47 191.4 103 85.4
Atru.chr3.3680 Acer truncatum HOM05D006884 ORTHO05D008604 5.3e-47 191.0 103 85.4
DCAR_018827 Daucus carota HOM05D006884 ORTHO05D008604 9.1e-47 190.3 103 83.5
Ciclev10027944m.g Citrus clementina HOM05D006884 ORTHO05D008604 1.2e-46 189.9 98 86.7
Hma1.2p1_0071F.1_g038150 Hydrangea macrophylla HOM05D006884 ORTHO05D008604 1.6e-46 189.5 106 84.0
Thecc.09G259000 Theobroma cacao HOM05D006884 ORTHO05D008604 2.7e-46 188.7 101 85.1
vmacro03180 Vaccinium macrocarpon HOM05D006884 ORTHO05D008604 2.7e-46 188.7 103 85.4
Lj2C1032T7 Lonicera japonica HOM05D006884 ORTHO05D008604 7.7e-46 187.2 101 85.1
Prupe.6G097500 Prunus persica HOM05D006884 ORTHO05D008604 1.0e-45 186.8 105 82.9
GSVIVG01025156001 Vitis vinifera HOM05D006884 ORTHO05D008604 1.0e-45 186.8 120 73.3
Duzib168G2304 Durio zibethinus HOM05D006884 ORTHO05D008604 2.2e-45 185.7 101 83.2
Phvul.011G073400 Phaseolus vulgaris HOM05D006884 ORTHO05D008604 2.2e-45 185.7 104 82.7
Actinidia07119 Actinidia chinensis HOM05D006884 ORTHO05D008604 5.0e-45 184.5 104 80.8
TPR.G15554 Trifolium pratense HOM05D006884 ORTHO05D008604 5.0e-45 184.5 100 84.0
VMungo1127G0767 Vigna mungo HOM05D006884 ORTHO05D008604 5.0e-45 184.5 98 86.7
Lj3g0026527 Lotus japonicus HOM05D006884 ORTHO05D008604 6.5e-45 184.1 104 81.7
Glyma.11G154214 Glycine max HOM05D006884 ORTHO05D008604 8.5e-45 183.7 104 81.7
Ca_19247_v3 Cicer arietinum L. HOM05D006884 ORTHO05D008604 1.1e-44 183.3 104 80.8
arahy.Tifrunner.gnm1.ann1.REDW7M Arachis hypogaea HOM05D006884 ORTHO05D008604 1.9e-44 182.6 104 81.7
Medtr4g060500 Medicago truncatula HOM05D006884 ORTHO05D008604 1.9e-44 182.6 100 83.0
Psat7g223440 Pisum sativum HOM05D006884 ORTHO05D008604 1.9e-44 182.6 111 77.5
TAR369G0310 Trochodendron aralioides HOM05D006884 ORTHO05D008604 1.9e-44 182.6 122 75.4
arahy.Tifrunner.gnm1.ann1.AY6ICH Arachis hypogaea HOM05D006884 ORTHO05D008604 2.5e-44 182.2 104 81.7
ClCG03G002300 Citrullus lanatus HOM05D006884 ORTHO05D008604 2.5e-44 182.2 103 79.6
Lalb_Chr01g0004191 Lupinus albus HOM05D006884 ORTHO05D008604 2.5e-44 182.2 104 79.8
CANSAT54G0393 Cannabis sativa HOM05D006884 ORTHO05D008604 4.2e-44 181.4 103 80.6
PSO339G1719 Papaver somniferum HOM05D006884 ORTHO05D008604 4.2e-44 181.4 106 80.2
COL.COLO4_05186 Corchorus olitorius HOM05D006884 ORTHO05D008604 5.5e-44 181.0 101 81.2
Oeu005901.1 Olea europaea HOM05D006884 ORTHO05D008604 7.2e-44 180.6 103 83.5
CiPaw.13G108400 Carya illinoinensis HOM05D006884 ORTHO05D008604 9.4e-44 180.3 103 79.6
PSO063G0254 Papaver somniferum HOM05D006884 ORTHO05D008604 4.7e-43 177.9 106 79.2
CsaV3_1G012990 Cucumis sativus L. HOM05D006884 ORTHO05D008604 8.0e-43 177.2 103 76.7
Gohir.D13G225000 Gossypium hirsutum HOM05D006884 ORTHO05D008604 1.0e-42 176.8 101 78.2
Gorai.013G255800 Gossypium raimondii HOM05D006884 ORTHO05D008604 1.0e-42 176.8 101 78.2
ATR0759G051 Amborella trichopoda HOM05D006884 ORTHO05D008604 1.8e-42 176.0 96 84.4
FvH4_3g32920 Fragaria vesca HOM05D006884 ORTHO05D008604 1.8e-42 176.0 104 78.8
MELO3C005036.2 Cucumis melo HOM05D006884 ORTHO05D008604 3.0e-42 175.3 103 75.7
Gohir.A13G221000 Gossypium hirsutum HOM05D006884 ORTHO05D008604 3.0e-42 175.3 101 77.2
MSTRG.12324 Avicennia marina HOM05D006884 ORTHO05D008604 4.0e-42 174.9 120 70.0
SGA_v2.0_scaffold2G00907 Striga asiatica HOM05D006884 ORTHO05D008604 4.0e-42 174.9 120 69.2
Sed0010984 Sechium edule HOM05D006884 ORTHO05D008604 6.8e-42 174.1 110 70.0
Manes.04G024400 Manihot esculenta HOM05D006884 ORTHO05D008604 2.6e-41 172.2 106 75.5
Migut.N02612 Erythranthe guttata HOM05D006884 ORTHO05D008604 3.4e-41 171.8 123 65.9
Nn4g22225 Nelumbo nucifera HOM05D006884 ORTHO05D008604 3.4e-41 171.8 86 93.0
arahy.Tifrunner.gnm1.ann1.H1W27A Arachis hypogaea HOM05D006884 ORTHO05D008604 5.7e-41 171.0 104 78.8
Actinidia24083 Actinidia chinensis HOM05D006884 ORTHO05D008604 9.8e-41 170.2 104 75.0
SEGI_12216 Sequoiadendron giganteum HOM05D006884 ORTHO05D008604 9.8e-41 170.2 107 74.8
Cpa.g.sc139.78 Carica papaya HOM05D006884 ORTHO05D008604 1.7e-40 169.5 103 78.6
FAN11G3181 Fragaria x ananassa HOM05D006884 ORTHO05D008604 2.2e-40 169.1 104 76.9
Peaxi162Scf00351g00322 Petunia axillaris HOM05D006884 ORTHO05D008604 8.3e-40 167.2 110 71.8
RcHm_v2.0_Chr5g0060051 Rosa chinensis HOM05D006884 ORTHO05D008604 8.3e-40 167.2 87 86.2
TWI38G0581 Tripterygium wilfordii HOM05D006884 ORTHO05D008604 8.3e-40 167.2 100 76.0
CDE09G0273 Ceratophyllum demersum HOM05D006884 ORTHO05D008604 1.1e-39 166.8 105 71.4
Nn3g19002 Nelumbo nucifera HOM05D005115 ORTHO05D005703 1.8e-39 166.0 86 90.7
PGR119G0543 Punica granatum HOM05D006884 ORTHO05D008604 3.1e-39 165.2 103 73.8
SalBow3G0672 Salvia bowleyana HOM05D006884 ORTHO05D008604 4.1e-39 164.9 105 73.3
FAN25G2544 Fragaria x ananassa HOM05D006884 ORTHO05D008604 7.0e-39 164.1 104 73.1
TWI38G2405 Tripterygium wilfordii HOM05D006884 ORTHO05D008604 9.1e-39 163.7 100 76.0
Sabra09G0009400 Salix brachista HOM05D006884 ORTHO05D008604 1.6e-38 162.9 105 73.3
PGSC0003DMG400008066 Solanum tuberosum HOM05D006884 ORTHO05D008604 1.0e-37 160.2 107 71.0
CAN.G631.5 Capsicum annuum HOM05D006884 ORTHO05D008604 3.8e-37 158.3 107 71.0
Eucgr.J00944 Eucalyptus grandis HOM05D006884 ORTHO05D008604 5.0e-37 157.9 122 62.3
Zm00001eb397080 Zea mays HOM05D006884 ORTHO05D008604 5.0e-37 157.9 95 75.8
Solyc11g069170.2 Solanum lycopersicum HOM05D006884 ORTHO05D008604 6.5e-37 157.5 97 75.3
Sopen11g027910 Solanum pennellii HOM05D006884 ORTHO05D008604 6.5e-37 157.5 97 75.3
Potri.009G014900 Populus trichocarpa HOM05D006884 ORTHO05D008604 1.1e-36 156.8 103 71.8
Mapoly0043s0112 Marchantia polymorpha HOM05D006884 ORTHO05D008604 1.2e-35 153.3 93 72.0
SMO364G0331 Selaginella moellendorffii HOM05D006884 ORTHO05D008604 1.2e-35 153.3 93 71.0
Nitab4.5_0002186g0020 Nicotiana tabacum HOM05D006884 ORTHO05D008604 8.0e-35 150.6 97 73.2
Nitab4.5_0000999g0100 Nicotiana tabacum HOM05D006884 ORTHO05D008604 1.8e-34 149.4 97 72.2
Sc06g0010010 Simmondsia chinensis HOM05D006884 ORTHO05D008604 1.8e-34 149.4 105 65.7
unitig_61.g26171 Utricularia gibba HOM05D006884 ORTHO05D008604 3.0e-34 148.7 101 66.3
C05p05970 Brassica napus HOM05D006884 ORTHO05D008604 5.2e-34 147.9 96 70.8
BolC5t29358H Brassica oleracea HOM05D003203 ORTHO05D003526 5.2e-34 147.9 96 70.8
HPP92_025089 Vanilla planifolia HOM05D006884 ORTHO05D008604 8.9e-34 147.1 96 67.7
Os03g0288800 Oryza sativa ssp. japonica HOM05D006884 ORTHO05D008604 1.2e-33 146.7 95 70.5
AUR62025009 Chenopodium quinoa HOM05D006884 ORTHO05D008604 2.0e-33 146.0 98 70.4
Aa31LG8G13130 Aethionema arabicum HOM05D006884 ORTHO05D008604 2.6e-33 145.6 104 69.2
Hund10472 Selenicereus undatus HOM05D006884 ORTHO05D008604 5.7e-33 144.4 122 58.2
AUR62006527 Chenopodium quinoa HOM05D006884 ORTHO05D008604 1.3e-32 143.3 98 69.4
THA.LOC104815748 Tarenaya hassleriana HOM05D006884 ORTHO05D008604 1.3e-32 143.3 89 73.0
BcaB02g06701 Brassica carinata HOM05D006884 ORTHO05D008604 1.7e-32 142.9 117 61.5
MBI14_g07928_MAGBIO Magnolia biondii HOM05D006884 ORTHO05D008604 1.7e-32 142.9 105 67.6
BcaC05g24709 Brassica carinata HOM05D006884 ORTHO05D008604 2.2e-32 142.5 89 71.9
A06p05030 Brassica napus HOM05D006884 ORTHO05D008604 2.2e-32 142.5 89 71.9
BraA06t23709Z Brassica rapa HOM05D006884 ORTHO05D008604 2.2e-32 142.5 89 71.9
Thhalv10006976m.g Eutrema salsugineum HOM05D006884 ORTHO05D008604 4.9e-32 141.4 89 70.8
Sp4g05030 Schrenkiella parvula HOM05D006884 ORTHO05D008604 4.9e-32 141.4 100 66.0
CARHR007750 Cardamine hirsuta HOM05D006884 ORTHO05D008604 6.3e-32 141.0 89 70.8
Carub.0001s0732 Capsella rubella HOM05D006884 ORTHO05D008604 1.4e-31 139.8 89 69.7
AT1G07970 Arabidopsis thaliana HOM05D006884 ORTHO05D008604 2.4e-31 139.0 89 69.7
AL1G18300 Arabidopsis lyrata HOM05D006884 ORTHO05D008604 7.0e-31 137.5 89 68.5
HanXRQChr07g0197411 Helianthus annuus HOM05D006884 ORTHO05D008604 1.2e-30 136.7 96 68.8
ECA238G4524 Erigeron canadensis HOM05D006884 ORTHO05D008604 2.0e-30 136.0 100 64.0
Lsat_1_v5_gn_2_97900 Lactuca sativa HOM05D006884 ORTHO05D008604 2.0e-30 136.0 94 67.0
BcaB07g34161 Brassica carinata HOM05D006884 ORTHO05D008604 4.4e-25 118.2 92 62.0
Pp3c12_22070 Physcomitrium patens HOM05D006884 ORTHO05D008604 2.4e-23 112.5 97 54.6
SEGI_34075 Sequoiadendron giganteum HOM05D000114 ORTHO05D008604 1.7e-08 63.2 53 52.8


User provided reference genes

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