Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g02388 Nelumbo nucifera HOM05D004770 ORTHO05D005572 3.2e-122 441.8 227 100.0
Nn6g34126 Nelumbo nucifera HOM05D004770 ORTHO05D005572 9.2e-114 413.7 227 91.6
Manes.01G205200 Manihot esculenta HOM05D004770 ORTHO05D005572 1.3e-112 409.8 227 89.9
Potri.002G049900 Populus trichocarpa HOM05D004770 ORTHO05D005572 9.5e-111 403.7 227 88.5
Potri.005G212800 Populus trichocarpa HOM05D004770 ORTHO05D005572 9.5e-111 403.7 228 88.2
Hma1.2p1_2357F.1_g320590 Hydrangea macrophylla HOM05D004770 ORTHO05D005572 2.1e-110 402.5 227 90.7
CiPaw.07G089000 Carya illinoinensis HOM05D004770 ORTHO05D005572 2.8e-110 402.1 227 88.1
Atru.chr5.1488 Acer truncatum HOM05D004770 ORTHO05D005572 1.1e-109 400.2 227 88.1
Sabra05G0162600 Salix brachista HOM05D004770 ORTHO05D005572 1.8e-109 399.4 228 88.6
Cc01_g06090 Coffea canephora HOM05D004770 ORTHO05D005572 6.8e-109 397.5 227 88.5
PGR031G3940 Punica granatum HOM05D004770 ORTHO05D005572 8.9e-109 397.1 227 87.7
GSVIVG01001190001 Vitis vinifera HOM05D004770 ORTHO05D005572 8.9e-109 397.1 227 89.4
Cfa006174 Carpinus fangiana HOM05D004770 ORTHO05D005572 2.6e-108 395.6 227 87.7
TAR362G0723 Trochodendron aralioides HOM05D004770 ORTHO05D005572 2.6e-108 395.6 227 89.0
QL01p010878 Quercus lobata HOM05D004770 ORTHO05D005572 3.4e-108 395.2 226 87.2
Oeu025750.1 Olea europaea HOM05D004770 ORTHO05D005572 4.4e-108 394.8 227 88.5
Eucgr.G02085 Eucalyptus grandis HOM05D004770 ORTHO05D005572 5.8e-108 394.4 227 87.7
Lj1A49T61 Lonicera japonica HOM05D004770 ORTHO05D005572 2.9e-107 392.1 227 86.8
CSS0005681 Camellia sinensis var. sinensis HOM05D004770 ORTHO05D005572 4.9e-107 391.3 227 87.7
Dinv34783 Davidia involucrata HOM05D004770 ORTHO05D005572 8.3e-107 390.6 222 89.2
Ciclev10022091m.g Citrus clementina HOM05D004770 ORTHO05D005572 1.4e-106 389.8 227 86.3
CSS0032403 Camellia sinensis var. sinensis HOM05D004770 ORTHO05D005572 2.4e-106 389.0 227 87.7
Glyma.18G056100 Glycine max HOM05D004770 ORTHO05D005572 2.4e-106 389.0 227 87.2
vmacro02598 Vaccinium macrocarpon HOM05D004770 ORTHO05D005572 5.4e-106 387.9 228 88.2
Actinidia24914 Actinidia chinensis HOM05D004770 ORTHO05D005572 1.2e-105 386.7 227 85.9
TWI39G0629 Tripterygium wilfordii HOM05D004770 ORTHO05D005572 2.1e-105 386.0 227 86.3
Lj3A581T22 Lonicera japonica HOM05D004770 ORTHO05D005572 3.5e-105 385.2 227 85.5
Sabra02G0040800 Salix brachista HOM05D004770 ORTHO05D005572 6.0e-105 384.4 230 84.8
MBI02_g08255_MAGBIO Magnolia biondii HOM05D004770 ORTHO05D005572 1.0e-104 383.6 215 88.8
Thecc.01G273700 Theobroma cacao HOM05D004770 ORTHO05D005572 1.0e-104 383.6 220 87.3
SalBow4G2779 Salvia bowleyana HOM05D004770 ORTHO05D005572 1.3e-104 383.3 226 85.4
SalBow7G1168 Salvia bowleyana HOM05D004770 ORTHO05D005572 1.3e-104 383.3 219 85.8
Nitab4.5_0000208g0100 Nicotiana tabacum HOM05D004770 ORTHO05D005572 2.3e-104 382.5 227 83.3
Phvul.007G249400 Phaseolus vulgaris HOM05D004770 ORTHO05D005572 3.0e-104 382.1 227 84.6
Duzib138G1187 Durio zibethinus HOM05D004770 ORTHO05D005572 3.9e-104 381.7 227 85.0
ECA248G2232 Erigeron canadensis HOM05D004770 ORTHO05D005572 3.9e-104 381.7 220 86.8
SGA_v2.0_scaffold1G00513 Striga asiatica HOM05D004770 ORTHO05D005572 3.9e-104 381.7 227 83.7
arahy.Tifrunner.gnm1.ann1.YE39MU Arachis hypogaea HOM05D004770 ORTHO05D005572 5.1e-104 381.3 221 85.1
PSO832G1010 Papaver somniferum HOM05D004770 ORTHO05D005572 5.1e-104 381.3 227 84.6
arahy.Tifrunner.gnm1.ann1.RIN6C8 Arachis hypogaea HOM05D004770 ORTHO05D005572 6.6e-104 380.9 218 86.7
arahy.Tifrunner.gnm1.ann1.W9SXTW Arachis hypogaea HOM05D004770 ORTHO05D005572 1.5e-103 379.8 218 86.7
Phvul.006G075100 Phaseolus vulgaris HOM05D004770 ORTHO05D005572 1.5e-103 379.8 227 84.6
Nitab4.5_0000759g0280 Nicotiana tabacum HOM05D004770 ORTHO05D005572 1.9e-103 379.4 227 85.9
CANSAT80G2828 Cannabis sativa HOM05D004770 ORTHO05D005572 2.5e-103 379.0 227 83.7
Gorai.008G003100 Gossypium raimondii HOM05D004770 ORTHO05D005572 5.6e-103 377.9 222 85.6
Solyc06g084160.4 Solanum lycopersicum HOM05D004770 ORTHO05D005572 7.3e-103 377.5 228 86.0
arahy.Tifrunner.gnm1.ann1.S84LE1 Arachis hypogaea HOM05D004770 ORTHO05D005572 1.2e-102 376.7 218 85.8
BcaNung02803 Brassica carinata HOM05D004770 ORTHO05D005572 1.2e-102 376.7 227 81.5
HanXRQChr08g0213371 Helianthus annuus HOM05D004770 ORTHO05D005572 1.2e-102 376.7 220 85.5
A06p36610 Brassica napus HOM05D004770 ORTHO05D005572 2.1e-102 375.9 227 81.9
BraA06t26586Z Brassica rapa HOM05D004770 ORTHO05D005572 2.1e-102 375.9 227 81.9
Gohir.D12G003300 Gossypium hirsutum HOM05D004770 ORTHO05D005572 2.1e-102 375.9 222 85.1
Aqoxy2G03435 Aquilegia oxysepala HOM05D004770 ORTHO05D005572 2.8e-102 375.6 227 84.1
BcaNung03978 Brassica carinata HOM05D004770 ORTHO05D005572 2.8e-102 375.6 227 81.9
FAN20G2343 Fragaria x ananassa HOM05D004770 ORTHO05D005572 2.8e-102 375.6 229 84.3
Gohir.A12G003600 Gossypium hirsutum HOM05D004770 ORTHO05D005572 3.6e-102 375.2 222 85.6
HPP92_017651 Vanilla planifolia HOM05D004770 ORTHO05D005572 3.6e-102 375.2 227 84.1
PGSC0003DMG400020135 Solanum tuberosum HOM05D004770 ORTHO05D005572 4.7e-102 374.8 228 85.5
AUR62032312 Chenopodium quinoa HOM05D004770 ORTHO05D005572 6.2e-102 374.4 227 82.4
RcHm_v2.0_Chr6g0290401 Rosa chinensis HOM05D004770 ORTHO05D005572 6.2e-102 374.4 229 84.3
Sopen06g035540 Solanum pennellii HOM05D004770 ORTHO05D005572 6.2e-102 374.4 228 85.5
Carub.0006s2388 Capsella rubella HOM05D004770 ORTHO05D005572 8.1e-102 374.0 227 81.5
Thhalv10004885m.g Eutrema salsugineum HOM05D004770 ORTHO05D005572 8.1e-102 374.0 219 82.6
AT5G26110 Arabidopsis thaliana HOM05D004770 ORTHO05D005572 1.4e-101 373.2 227 81.1
Migut.N02033 Erythranthe guttata HOM05D004770 ORTHO05D005572 1.4e-101 373.2 227 81.5
MD11G1280900 Malus domestica HOM05D004770 ORTHO05D005572 1.8e-101 372.9 221 87.8
VMungo0540G0250 Vigna mungo HOM05D004770 ORTHO05D005572 1.8e-101 372.9 227 83.3
Lalb_Chr18g0051481 Lupinus albus HOM05D004770 ORTHO05D005572 4.0e-101 371.7 227 81.5
Aa31LG10G17080 Aethionema arabicum HOM05D004770 ORTHO05D005572 5.2e-101 371.3 227 80.2
Sp2g21620 Schrenkiella parvula HOM05D004770 ORTHO05D005572 5.2e-101 371.3 227 80.2
AL2G11930 Arabidopsis lyrata HOM05D004770 ORTHO05D005572 6.8e-101 370.9 227 80.6
CAN.G1549.14 Capsicum annuum HOM05D004770 ORTHO05D005572 6.8e-101 370.9 223 85.2
Ca_15021_v3 Cicer arietinum L. HOM05D004770 ORTHO05D005572 6.8e-101 370.9 227 81.5
Migut.D00330 Erythranthe guttata HOM05D004770 ORTHO05D005572 8.9e-101 370.5 221 84.6
Medtr3g465790 Medicago truncatula HOM05D004770 ORTHO05D005572 1.2e-100 370.2 227 81.5
Carub.0005s0602 Capsella rubella HOM05D004770 ORTHO05D005572 1.5e-100 369.8 228 80.7
Rhsim13G0027500 Rhododendron simsii HOM05D004770 ORTHO05D005572 2.6e-100 369.0 214 86.9
Lsat_1_v5_gn_5_186200 Lactuca sativa HOM05D004770 ORTHO05D005572 3.4e-100 368.6 214 86.9
COL.COLO4_09057 Corchorus olitorius HOM05D001769 ORTHO05D001695 4.4e-100 368.2 207 89.4
Solyc08g005140.3 Solanum lycopersicum HOM05D004770 ORTHO05D005572 1.7e-99 366.3 223 83.4
MELO3C015367.2 Cucumis melo HOM05D004770 ORTHO05D005572 2.9e-99 365.5 227 81.9
THA.LOC104817561 Tarenaya hassleriana HOM05D004770 ORTHO05D005572 2.9e-99 365.5 217 82.9
CARHR187390 Cardamine hirsuta HOM05D004770 ORTHO05D005572 3.8e-99 365.2 227 78.4
ClCG03G016560 Citrullus lanatus HOM05D004770 ORTHO05D005572 3.8e-99 365.2 227 81.9
Sopen08g001150 Solanum pennellii HOM05D004770 ORTHO05D005572 3.8e-99 365.2 223 83.4
EL10Ac5g10525 Beta vulgaris HOM05D004770 ORTHO05D005572 4.9e-99 364.8 227 80.2
DCAR_012498 Daucus carota HOM05D004770 ORTHO05D005572 4.9e-99 364.8 219 82.2
FAN27G1754 Fragaria x ananassa HOM05D004770 ORTHO05D005572 6.4e-99 364.4 233 81.1
CsaV3_1G039420 Cucumis sativus L. HOM05D004770 ORTHO05D005572 4.2e-98 361.7 225 80.9
Haze_04673 Corylus avellana HOM05D004770 ORTHO05D005572 7.1e-98 360.9 225 81.3
Actinidia00788 Actinidia chinensis HOM05D004770 ORTHO05D005572 9.3e-98 360.5 207 88.4
PSO170G2661 Papaver somniferum HOM05D004770 ORTHO05D005572 2.1e-97 359.4 227 78.9
MBI15_g39353_MAGBIO Magnolia biondii HOM05D004770 ORTHO05D005572 3.5e-97 358.6 205 86.8
unitig_0.g135 Utricularia gibba HOM05D004770 ORTHO05D005572 3.5e-97 358.6 214 81.8
Zm00001eb222890 Zea mays HOM05D004770 ORTHO05D005572 4.6e-97 358.2 227 80.2
Sed0021970 Sechium edule HOM05D004770 ORTHO05D005572 1.0e-96 357.1 219 82.6
Nitab4.5_0004355g0020 Nicotiana tabacum HOM05D004770 ORTHO05D005572 1.3e-96 356.7 214 84.6
ATR0665G226 Amborella trichopoda HOM05D004770 ORTHO05D005572 3.0e-96 355.5 215 82.3
PGSC0003DMG400017838 Solanum tuberosum HOM05D004770 ORTHO05D005572 3.9e-96 355.1 209 85.6
vmacro14906 Vaccinium macrocarpon HOM05D004770 ORTHO05D005572 3.9e-96 355.1 214 85.0
Cpa.g.sc41.63 Carica papaya HOM05D004770 ORTHO05D005572 5.1e-96 354.8 209 86.1
AUR62012543 Chenopodium quinoa HOM05D004770 ORTHO05D005572 5.1e-96 354.8 206 85.0
DCAR_002713 Daucus carota HOM05D004770 ORTHO05D005572 6.6e-96 354.4 214 82.7
C07p41870 Brassica napus HOM05D004770 ORTHO05D005572 8.7e-96 354.0 214 80.8
VMungo0720G0347 Vigna mungo HOM05D004770 ORTHO05D005572 8.7e-96 354.0 214 81.3
Lj3g0010058 Lotus japonicus HOM05D004770 ORTHO05D005572 1.5e-95 353.2 206 84.5
TPR.G25688 Trifolium pratense HOM05D004770 ORTHO05D005572 5.6e-95 351.3 213 80.8
Psat2g184920 Pisum sativum HOM05D004770 ORTHO05D005572 1.6e-94 349.7 265 69.8
Prupe.8G236800 Prunus persica HOM05D004770 ORTHO05D005572 3.4e-92 342.0 202 87.1
BolC7t44719H Brassica oleracea HOM05D004770 ORTHO05D005572 4.4e-92 341.7 237 73.0
PSO210G1988 Papaver somniferum HOM05D004770 ORTHO05D005572 7.6e-92 340.9 227 76.2
Hund02843 Selenicereus undatus HOM05D004770 ORTHO05D005572 8.4e-91 337.4 214 77.6
QL12p020786 Quercus lobata HOM05D004770 ORTHO05D005572 3.9e-88 328.6 190 84.7
SEGI_22603 Sequoiadendron giganteum HOM05D004770 ORTHO05D005572 8.7e-88 327.4 214 75.7
Lj2g0018175 Lotus japonicus HOM05D004770 ORTHO05D005572 3.3e-87 325.5 192 82.8
SEGI_19127 Sequoiadendron giganteum HOM05D004770 ORTHO05D005572 3.1e-85 318.9 212 74.1
CAN.G1549.26 Capsicum annuum HOM05D004770 ORTHO05D005572 1.7e-83 313.2 222 75.2
Peaxi162Scf00783g00122 Petunia axillaris HOM05D004770 ORTHO05D005572 2.9e-83 312.4 186 83.9
Nitab4.5_0006132g0020 Nicotiana tabacum HOM05D004770 ORTHO05D005572 3.2e-82 308.9 195 77.4
Glyma.17G044400 Glycine max HOM05D004770 ORTHO05D005572 1.9e-79 299.7 220 73.2
Mapoly0133s0052 Marchantia polymorpha HOM05D004770 ORTHO05D005572 1.3e-78 297.0 227 68.3
Manes.05G078700 Manihot esculenta HOM05D004770 ORTHO05D005572 8.4e-75 284.3 227 68.3
Lj6g0011383 Lotus japonicus HOM05D004770 ORTHO05D005572 2.5e-74 282.7 164 86.0
Pp3c15_20330 Physcomitrium patens HOM05D004770 ORTHO05D005572 9.3e-74 280.8 216 67.6
SMO358G0317 Selaginella moellendorffii HOM05D004770 ORTHO05D005572 1.2e-73 280.4 230 64.8
QL01p011010 Quercus lobata HOM05D004770 ORTHO05D005572 2.3e-72 276.2 193 75.1
Sp5g00290 Schrenkiella parvula HOM05D004770 ORTHO05D005572 3.0e-72 275.8 164 81.7
CSS0010466 Camellia sinensis var. sinensis HOM05D004770 ORTHO05D005572 3.3e-71 272.3 229 67.2
AL2G11990 Arabidopsis lyrata HOM05D004770 ORTHO05D005572 1.5e-68 263.5 160 80.6
FvH4_2g23150 Fragaria vesca HOM05D004770 ORTHO05D005572 3.4e-68 262.3 197 72.1
AagrBONN_evm.TU.Sc2ySwM_362.2288 Anthoceros agrestis HOM05D004770 ORTHO05D005572 1.0e-67 260.8 193 67.9
SGA_v2.0_scaffold80G25747 Striga asiatica HOM05D004770 ORTHO05D005572 2.2e-67 259.6 150 84.7
Sc05g0001180 Simmondsia chinensis HOM05D004770 ORTHO05D005572 6.1e-65 251.5 153 81.0
Lsat_1_v5_gn_3_83521 Lactuca sativa HOM05D004770 ORTHO05D005572 3.3e-63 245.7 154 82.5
CBR_g40454 Chara braunii HOM05D004770 ORTHO05D005572 2.6e-60 236.1 237 52.3
MCO10G359 Micromonas commoda HOM05D004770 ORTHO05D005572 4.3e-55 218.8 215 53.5
SHI22269 Sapria himalayana HOM05D004770 ORTHO05D005572 3.7e-54 215.7 131 78.6
Psat6g025640 Pisum sativum HOM05D004770 ORTHO05D005572 1.2e-52 210.7 201 59.2
Actinidia09114 Actinidia chinensis HOM05D004770 ORTHO05D005572 8.0e-41 171.4 115 75.7
Zm00001eb031460 Zea mays HOM05D004770 ORTHO05D005572 1.4e-40 170.6 100 81.0
RcHm_v2.0_Chr3g0476231 Rosa chinensis HOM05D004770 ORTHO05D005572 1.8e-40 170.2 106 81.1
Actinidia21133 Actinidia chinensis HOM05D004770 ORTHO05D005572 4.0e-32 142.5 109 70.6
Zm00001eb432290 Zea mays HOM05D004770 ORTHO05D005572 1.2e-31 141.0 92 75.0
Actinidia21134 Actinidia chinensis HOM05D004770 ORTHO05D005572 1.6e-28 130.6 87 75.9
Glyma.02G191000 Glycine max HOM05D004770 ORTHO05D005572 2.5e-26 123.2 135 51.9
TAR633G1205 Trochodendron aralioides HOM05D004770 ORTHO05D005572 1.0e-24 117.9 113 61.1
CDE04G0604 Ceratophyllum demersum HOM05D004770 ORTHO05D005572 9.1e-21 104.8 63 76.2
TAR633G0687 Trochodendron aralioides HOM05D004770 ORTHO05D005572 7.2e-18 95.1 51 90.2
TAR636G2941 Trochodendron aralioides HOM05D004770 ORTHO05D005572 1.0e-16 91.3 97 51.5
GSVIVG01020385001 Vitis vinifera HOM05D004770 ORTHO05D005572 5.7e-15 85.5 114 45.6
AT1G08120 Arabidopsis thaliana HOM05D004770 ORTHO05D005572 9.8e-15 84.7 70 64.3
BcaC03g17841 Brassica carinata HOM05D004770 ORTHO05D005572 2.7e-12 76.6 68 52.9
Cre06.g306800 Chlamydomonas reinhardtii HOM05D004770 ORTHO05D005572 2.8e-09 66.6 213 25.4
GSVIVG01017585001 Vitis vinifera HOM05D004770 ORTHO05D005572 6.8e-08 62.0 63 57.1


User provided reference genes

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