Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g02292 Nelumbo nucifera HOM05D006086 ORTHO05D007396 6.4e-37 156.8 72 100.0
Nn4g26304 Nelumbo nucifera HOM05D006086 ORTHO05D007396 1.1e-25 119.4 69 82.6
CsaV3_3G013360 Cucumis sativus L. HOM05D006086 ORTHO05D007396 9.6e-25 116.3 60 85.0
Sed0006679 Sechium edule HOM05D006086 ORTHO05D007396 1.3e-24 115.9 60 85.0
Prupe.7G268200 Prunus persica HOM05D006086 ORTHO05D007396 4.8e-24 114.0 70 72.9
Glyma.03G155400 Glycine max HOM05D006086 ORTHO05D007396 5.3e-23 110.5 63 79.4
CAN.G907.3 Capsicum annuum HOM05D006086 ORTHO05D007396 1.2e-22 109.4 62 82.3
Glyma.19G157600 Glycine max HOM05D006086 ORTHO05D007396 1.5e-22 109.0 63 77.8
Potri.005G211000 Populus trichocarpa HOM05D006086 ORTHO05D007396 2.0e-22 108.6 54 81.5
Gohir.A09G215300 Gossypium hirsutum HOM05D006086 ORTHO05D007396 2.6e-22 108.2 56 83.9
Gohir.D09G217800 Gossypium hirsutum HOM05D006086 ORTHO05D007396 2.6e-22 108.2 56 83.9
Thecc.04G230800 Theobroma cacao HOM05D006086 ORTHO05D007396 2.6e-22 108.2 61 82.0
Lj1g0005264 Lotus japonicus HOM05D006086 ORTHO05D007396 3.4e-22 107.8 63 76.2
Lalb_Chr05g0210971 Lupinus albus HOM05D006086 ORTHO05D007396 3.4e-22 107.8 56 83.9
MD02G1003000 Malus domestica HOM05D006086 ORTHO05D007396 3.4e-22 107.8 63 73.0
Phvul.002G045900 Phaseolus vulgaris HOM05D006086 ORTHO05D007396 3.4e-22 107.8 60 80.0
HPP92_015928 Vanilla planifolia HOM05D006086 ORTHO05D007396 4.5e-22 107.5 54 83.3
CSS0045022 Camellia sinensis var. sinensis HOM05D006086 ORTHO05D007396 5.8e-22 107.1 60 81.7
Glyma.01G238500 Glycine max HOM05D006086 ORTHO05D007396 5.8e-22 107.1 61 80.3
Phvul.001G152800 Phaseolus vulgaris HOM05D006086 ORTHO05D007396 5.8e-22 107.1 63 77.8
Glyma.10G248500 Glycine max HOM05D006086 ORTHO05D007396 7.6e-22 106.7 61 80.3
Sed0021654 Sechium edule HOM05D006086 ORTHO05D007396 7.6e-22 106.7 60 81.7
GSVIVG01017965001 Vitis vinifera HOM05D006086 ORTHO05D007396 7.6e-22 106.7 58 81.0
Cc03_g03710 Coffea canephora HOM05D006086 ORTHO05D007396 1.0e-21 106.3 62 75.8
Glyma.20G145600 Glycine max HOM05D006086 ORTHO05D007396 1.0e-21 106.3 61 80.3
Manes.05G077700 Manihot esculenta HOM05D006086 ORTHO05D007396 1.0e-21 106.3 62 74.2
Manes.15G028500 Manihot esculenta HOM05D006086 ORTHO05D007396 1.0e-21 106.3 61 80.3
Nitab4.5_0000043g0210 Nicotiana tabacum HOM05D006086 ORTHO05D007396 1.0e-21 106.3 54 87.0
Nitab4.5_0012971g0020 Nicotiana tabacum HOM05D006086 ORTHO05D007396 1.0e-21 106.3 54 87.0
Solyc09g075980.3 Solanum lycopersicum HOM05D006086 ORTHO05D007396 1.0e-21 106.3 54 87.0
PGSC0003DMG400030088 Solanum tuberosum HOM05D006086 ORTHO05D007396 1.0e-21 106.3 54 87.0
Glyma.11G005000 Glycine max HOM05D006086 ORTHO05D007396 1.7e-21 105.5 54 81.5
CiPaw.07G090400 Carya illinoinensis HOM05D006086 ORTHO05D007396 2.9e-21 104.8 61 73.8
CiPaw.01G165300 Carya illinoinensis HOM05D006086 ORTHO05D007396 3.8e-21 104.4 60 76.7
Migut.G00335 Erythranthe guttata HOM05D006086 ORTHO05D007396 3.8e-21 104.4 61 77.0
RcHm_v2.0_Chr4g0416351 Rosa chinensis HOM05D006086 ORTHO05D007396 3.8e-21 104.4 61 80.3
MD13G1192200 Malus domestica HOM05D006086 ORTHO05D007396 5.0e-21 104.0 62 75.8
Oeu023395.1 Olea europaea HOM05D006086 ORTHO05D007396 5.0e-21 104.0 61 80.3
SalBow2G3603 Salvia bowleyana HOM05D006086 ORTHO05D007396 5.0e-21 104.0 66 72.7
Lj5g0007110 Lotus japonicus HOM05D006086 ORTHO05D007396 6.5e-21 103.6 61 78.7
Phvul.007G056800 Phaseolus vulgaris HOM05D006086 ORTHO05D007396 6.5e-21 103.6 61 77.0
Potri.008G152200 Populus trichocarpa HOM05D006086 ORTHO05D007396 6.5e-21 103.6 61 80.3
FvH4_4g15440 Fragaria vesca HOM05D006086 ORTHO05D007396 8.4e-21 103.2 61 78.7
FAN12G3621 Fragaria x ananassa HOM05D006086 ORTHO05D007396 8.4e-21 103.2 61 78.7
FAN17G2927 Fragaria x ananassa HOM05D006086 ORTHO05D007396 8.4e-21 103.2 61 78.7
FAN22G1306 Fragaria x ananassa HOM05D006086 ORTHO05D007396 8.4e-21 103.2 61 78.7
Atru.ctg752_3.89 Acer truncatum HOM05D006086 ORTHO05D007396 1.1e-20 102.8 56 80.4
Gorai.006G238700 Gossypium raimondii HOM05D006086 ORTHO05D007396 1.1e-20 102.8 56 82.1
MD15G1146200 Malus domestica HOM05D006086 ORTHO05D007396 1.1e-20 102.8 53 81.1
TAR633G0013 Trochodendron aralioides HOM05D006086 ORTHO05D007396 1.1e-20 102.8 61 78.7
arahy.Tifrunner.gnm1.ann1.GC569L Arachis hypogaea HOM05D006086 ORTHO05D007396 1.4e-20 102.4 61 78.7
arahy.Tifrunner.gnm1.ann1.I5363L Arachis hypogaea HOM05D006086 ORTHO05D007396 1.4e-20 102.4 61 78.7
EL10Ac3g06420 Beta vulgaris HOM05D006086 ORTHO05D007396 1.4e-20 102.4 74 71.6
BolC3t17520H Brassica oleracea HOM05D006086 ORTHO05D007396 1.4e-20 102.4 54 79.6
Oeu031234.1 Olea europaea HOM05D006086 ORTHO05D007396 1.4e-20 102.4 62 72.6
Thecc.01G143500 Theobroma cacao HOM05D006086 ORTHO05D007396 1.4e-20 102.4 69 66.7
Medtr1g104520 Medicago truncatula HOM05D006086 ORTHO05D007396 1.9e-20 102.1 61 75.4
Potri.010G088200 Populus trichocarpa HOM05D006086 ORTHO05D007396 1.9e-20 102.1 61 78.7
CSS0028415 Camellia sinensis var. sinensis HOM05D006086 ORTHO05D007396 2.5e-20 101.7 60 76.7
TAR636G0808 Trochodendron aralioides HOM05D006086 ORTHO05D007396 2.5e-20 101.7 61 78.7
CiPaw.08G106900 Carya illinoinensis HOM05D006086 ORTHO05D007396 3.2e-20 101.3 56 73.2
Hma1.2p1_3079F.1_g332420 Hydrangea macrophylla HOM05D006086 ORTHO05D007396 4.2e-20 100.9 56 76.8
Medtr5g006200 Medicago truncatula HOM05D006086 ORTHO05D007396 4.2e-20 100.9 60 76.7
Thecc.05G288200 Theobroma cacao HOM05D006086 ORTHO05D007396 4.2e-20 100.9 56 78.6
Manes.03G179500 Manihot esculenta HOM05D006086 ORTHO05D007396 5.5e-20 100.5 56 80.4
Os07g0572400 Oryza sativa ssp. japonica HOM05D006086 ORTHO05D007396 5.5e-20 100.5 53 81.1
Prupe.1G012900 Prunus persica HOM05D006086 ORTHO05D007396 5.5e-20 100.5 62 79.0
HanXRQChr15g0492031 Helianthus annuus HOM05D006086 ORTHO05D007396 7.1e-20 100.1 57 80.7
DCAR_030633 Daucus carota HOM05D006086 ORTHO05D007396 9.3e-20 99.8 56 78.6
Lalb_Chr02g0142691 Lupinus albus HOM05D006086 ORTHO05D007396 1.2e-19 99.4 51 82.4
MD16G1192800 Malus domestica HOM05D006086 ORTHO05D007396 1.6e-19 99.0 66 68.2
DCAR_027212 Daucus carota HOM05D006086 ORTHO05D007396 2.1e-19 98.6 56 76.8
Lsat_1_v5_gn_7_65621 Lactuca sativa HOM05D006086 ORTHO05D007396 2.1e-19 98.6 57 78.9
Medtr7g095120 Medicago truncatula HOM05D006086 ORTHO05D007396 2.1e-19 98.6 62 71.0
Psat3g063680 Pisum sativum HOM05D006086 ORTHO05D007396 2.7e-19 98.2 63 71.4
Sed0017079 Sechium edule HOM05D006086 ORTHO05D007396 2.7e-19 98.2 62 69.4
A05p26350 Brassica napus HOM05D006086 ORTHO05D007396 6.1e-19 97.1 54 77.8
BraA05t21510Z Brassica rapa HOM05D006086 ORTHO05D007396 6.1e-19 97.1 54 77.8
Gorai.003G066200 Gossypium raimondii HOM05D006086 ORTHO05D007396 6.1e-19 97.1 71 62.0
Oeu011629.1 Olea europaea HOM05D006086 ORTHO05D007396 6.1e-19 97.1 54 81.5
Dinv44531 Davidia involucrata HOM05D006086 ORTHO05D007396 7.9e-19 96.7 56 78.6
Os01g0778500 Oryza sativa ssp. japonica HOM05D006086 ORTHO05D007396 7.9e-19 96.7 61 63.9
Carub.0003s2258 Capsella rubella HOM05D006086 ORTHO05D007396 1.0e-18 96.3 54 77.8
Gohir.A02G031700 Gossypium hirsutum HOM05D006086 ORTHO05D007396 1.0e-18 96.3 59 74.6
Gohir.D02G038400 Gossypium hirsutum HOM05D006086 ORTHO05D007396 1.0e-18 96.3 59 74.6
Gorai.005G042300 Gossypium raimondii HOM05D006086 ORTHO05D007396 1.0e-18 96.3 59 74.6
ECA240G3083 Erigeron canadensis HOM05D006086 ORTHO05D007396 1.3e-18 95.9 57 77.2
COL.COLO4_12126 Corchorus olitorius HOM05D006086 ORTHO05D007396 1.8e-18 95.5 72 65.3
Gohir.A11G255000 Gossypium hirsutum HOM05D006086 ORTHO05D007396 1.8e-18 95.5 56 75.0
Gohir.D11G264700 Gossypium hirsutum HOM05D006086 ORTHO05D007396 1.8e-18 95.5 56 75.0
Gorai.007G284800 Gossypium raimondii HOM05D006086 ORTHO05D007396 1.8e-18 95.5 56 75.0
arahy.Tifrunner.gnm1.ann1.K13GF2 Arachis hypogaea HOM05D006086 ORTHO05D007396 2.3e-18 95.1 62 74.2
A01p32670 Brassica napus HOM05D006086 ORTHO05D007396 3.0e-18 94.7 54 75.9
GSVIVG01021842001 Vitis vinifera HOM05D006086 ORTHO05D007396 3.0e-18 94.7 61 75.4
Zm00001eb151540 Zea mays HOM05D006086 ORTHO05D007396 3.9e-18 94.4 64 60.9
ATR0737G002 Amborella trichopoda HOM05D006086 ORTHO05D007396 6.7e-18 93.6 69 68.1
C01p41850 Brassica napus HOM05D006086 ORTHO05D007396 6.7e-18 93.6 54 75.9
BolC1t04139H Brassica oleracea HOM05D006086 ORTHO05D007396 6.7e-18 93.6 54 75.9
CsaV3_7G028010 Cucumis sativus L. HOM05D006086 ORTHO05D007396 6.7e-18 93.6 63 71.4
AL3G36690 Arabidopsis lyrata HOM05D006086 ORTHO05D007396 8.7e-18 93.2 54 75.9
Lalb_Chr23g0273411 Lupinus albus HOM05D006086 ORTHO05D007396 8.7e-18 93.2 54 75.9
arahy.Tifrunner.gnm1.ann1.NA8V5S Arachis hypogaea HOM05D006086 ORTHO05D007396 1.5e-17 92.4 62 72.6
BraA01t03396Z Brassica rapa HOM05D006086 ORTHO05D007396 1.5e-17 92.4 54 74.1
Zm00001eb107360 Zea mays HOM05D006086 ORTHO05D007396 1.9e-17 92.0 57 73.7
Gohir.D11G232700 Gossypium hirsutum HOM05D006086 ORTHO05D007396 2.5e-17 91.7 61 67.2
Psat4g210480 Pisum sativum HOM05D006086 ORTHO05D007396 3.3e-17 91.3 50 80.0
Os03g0806800 Oryza sativa ssp. japonica HOM05D006086 ORTHO05D007396 9.7e-17 89.7 55 69.1
ClCG09G007150 Citrullus lanatus HOM05D006086 ORTHO05D007396 1.3e-16 89.4 63 68.3
CSS0043804 Camellia sinensis var. sinensis HOM05D006086 ORTHO05D007396 1.6e-16 89.0 54 72.2
Manes.09G155600 Manihot esculenta HOM05D006086 ORTHO05D007396 1.6e-16 89.0 57 71.9
CARHR098310 Cardamine hirsuta HOM05D006086 ORTHO05D007396 2.8e-16 88.2 54 74.1
Dinv32919 Davidia involucrata HOM05D001893 ORTHO05D007396 2.8e-16 88.2 53 71.7
Hund09501 Selenicereus undatus HOM05D006086 ORTHO05D007396 3.7e-16 87.8 59 64.4
HanXRQChr04g0118911 Helianthus annuus HOM05D006086 ORTHO05D007396 2.4e-15 85.1 54 64.8
Os07g0204400 Oryza sativa ssp. japonica HOM05D006086 ORTHO05D007396 6.9e-15 83.6 55 61.8
Potri.013G037800 Populus trichocarpa HOM05D006086 ORTHO05D007396 9.0e-15 83.2 57 70.2
BolC5t32839H Brassica oleracea HOM05D006086 ORTHO05D007396 2.6e-14 81.6 57 64.9
Lalb_Chr07g0189661 Lupinus albus HOM05D006086 ORTHO05D007396 2.6e-14 81.6 53 67.9
BraA03t13422Z Brassica rapa HOM05D006086 ORTHO05D007396 7.7e-14 80.1 48 72.9
Oeu034961.1 Olea europaea HOM05D006086 ORTHO05D007396 7.7e-14 80.1 53 62.3
Cc07_g10970 Coffea canephora HOM05D006086 ORTHO05D007396 1.3e-13 79.3 54 64.8
Lsat_1_v5_gn_8_56520 Lactuca sativa HOM05D006086 ORTHO05D007396 2.2e-13 78.6 54 63.0
Medtr5g006220 Medicago truncatula HOM05D006086 ORTHO05D007396 2.2e-13 78.6 56 60.7
Actinidia00772 Actinidia chinensis HOM05D001893 ORTHO05D001914 7.9e-11 70.1 44 68.2
Rhsim02G0023700 Rhododendron simsii HOM05D006086 ORTHO05D007396 5.1e-10 67.4 38 76.3
SEGI_12043 Sequoiadendron giganteum HOM05D006086 ORTHO05D007396 2.5e-09 65.1 51 58.8
Mapoly0080s0018 Marchantia polymorpha HOM05D006086 ORTHO05D007396 2.8e-08 61.6 63 38.1
SEGI_00264 Sequoiadendron giganteum HOM05D006086 ORTHO05D007396 2.8e-08 61.6 52 51.9
Medtr5g006260 Medicago truncatula HOM05D006086 ORTHO05D007396 3.1e-07 58.2 78 39.7
SEGI_39026 Sequoiadendron giganteum HOM05D006086 ORTHO05D007396 6.9e-07 57.0 44 56.8


User provided reference genes

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