Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g02288 Nelumbo nucifera HOM05D007076 ORTHO05D008800 2.2e-60 235.3 112 100.0
Nn1g00072 Nelumbo nucifera HOM05D007076 ORTHO05D008800 7.9e-34 147.1 79 89.9
Nn2g12218 Nelumbo nucifera HOM05D007076 ORTHO05D008800 7.9e-34 147.1 79 89.9
Nn3g21909 Nelumbo nucifera HOM05D007076 ORTHO05D008800 1.9e-27 125.9 83 78.3
Thecc.09G139600 Theobroma cacao HOM05D007076 ORTHO05D008800 2.8e-23 112.1 84 65.5
Duzib168G1701 Durio zibethinus HOM05D007076 ORTHO05D008800 4.8e-23 111.3 88 65.9
Dinv41435 Davidia involucrata HOM05D007076 ORTHO05D008800 5.3e-22 107.8 84 65.5
PSO170G2339 Papaver somniferum HOM05D007076 ORTHO05D008800 7.0e-22 107.5 81 65.4
Cfa020904 Carpinus fangiana HOM05D007076 ORTHO05D008800 9.1e-22 107.1 80 65.0
Ciclev10009248m.g Citrus clementina HOM05D007076 ORTHO05D008800 1.2e-21 106.7 80 63.8
Gohir.A05G012200 Gossypium hirsutum HOM05D007076 ORTHO05D008800 1.2e-21 106.7 84 60.7
Gorai.009G013300 Gossypium raimondii HOM05D007076 ORTHO05D008800 1.2e-21 106.7 84 60.7
Haze_19333 Corylus avellana HOM05D007076 ORTHO05D008800 1.6e-21 106.3 80 65.0
GSVIVG01012872001 Vitis vinifera HOM05D007076 ORTHO05D008800 2.0e-21 105.9 84 65.5
Actinidia21919 Actinidia chinensis HOM05D007076 ORTHO05D008800 2.6e-21 105.5 81 60.5
ClCG06G011950 Citrullus lanatus HOM05D007076 ORTHO05D008800 3.5e-21 105.1 85 62.4
COL.COLO4_24128 Corchorus olitorius HOM05D007076 ORTHO05D008800 3.5e-21 105.1 84 60.7
FvH4_1g01870 Fragaria vesca HOM05D007076 ORTHO05D008800 3.5e-21 105.1 80 62.5
FAN19G3087 Fragaria x ananassa HOM05D007076 ORTHO05D008800 3.5e-21 105.1 80 62.5
FAN26G2288 Fragaria x ananassa HOM05D007076 ORTHO05D008800 3.5e-21 105.1 80 62.5
PSO017G3183 Papaver somniferum HOM05D007076 ORTHO05D008800 4.5e-21 104.8 77 62.3
FAN23G1541 Fragaria x ananassa HOM05D007076 ORTHO05D008800 7.7e-21 104.0 80 61.2
Gohir.D05G013300 Gossypium hirsutum HOM05D007076 ORTHO05D008800 7.7e-21 104.0 77 63.6
TAR625G0498 Trochodendron aralioides HOM05D007076 ORTHO05D008800 7.7e-21 104.0 80 63.8
CANSAT11G0571 Cannabis sativa HOM05D007076 ORTHO05D008800 1.0e-20 103.6 81 60.5
TWI34G1052 Tripterygium wilfordii HOM05D007076 ORTHO05D008800 1.0e-20 103.6 80 65.0
Atru.chr7.279 Acer truncatum HOM05D007076 ORTHO05D008800 1.3e-20 103.2 81 63.0
QL02p091054 Quercus lobata HOM05D007076 ORTHO05D008800 1.3e-20 103.2 80 62.5
Eucgr.C04107 Eucalyptus grandis HOM05D007076 ORTHO05D008800 2.2e-20 102.4 84 58.3
BcaC02g06997 Brassica carinata HOM05D007076 ORTHO05D008800 2.9e-20 102.1 84 63.1
MELO3C010270.2 Cucumis melo HOM05D007076 ORTHO05D008800 2.9e-20 102.1 85 61.2
Sed0007180 Sechium edule HOM05D007076 ORTHO05D008800 2.9e-20 102.1 85 60.0
VMungo1215G2969 Vigna mungo HOM05D007076 ORTHO05D008800 2.9e-20 102.1 80 60.0
BolC4t28783H Brassica oleracea HOM05D007076 ORTHO05D008800 3.8e-20 101.7 84 63.1
MD15G1161100 Malus domestica HOM05D007076 ORTHO05D008800 3.8e-20 101.7 77 63.6
Phvul.003G173400 Phaseolus vulgaris HOM05D007076 ORTHO05D008800 3.8e-20 101.7 80 58.8
Lj4g0004831 Lotus japonicus HOM05D007076 ORTHO05D008800 5.0e-20 101.3 80 58.8
RcHm_v2.0_Chr2g0086841 Rosa chinensis HOM05D007076 ORTHO05D008800 6.5e-20 100.9 81 59.3
A04p35120 Brassica napus HOM05D007076 ORTHO05D008800 8.5e-20 100.5 84 61.9
BraA04t18948Z Brassica rapa HOM05D007076 ORTHO05D008800 8.5e-20 100.5 84 61.9
Nitab4.5_0003305g0010 Nicotiana tabacum HOM05D007076 ORTHO05D008800 8.5e-20 100.5 80 61.2
Prupe.7G256300 Prunus persica HOM05D007076 ORTHO05D008800 8.5e-20 100.5 80 61.2
Ca_21630_v3 Cicer arietinum L. HOM05D007076 ORTHO05D008800 1.1e-19 100.1 80 61.2
Ca_30692_v3 Cicer arietinum L. HOM05D007076 ORTHO05D008800 1.1e-19 100.1 80 61.2
MBI14_g03617_MAGBIO Magnolia biondii HOM05D007076 ORTHO05D008800 1.1e-19 100.1 91 56.0
PGR142G4145 Punica granatum HOM05D007076 ORTHO05D008800 1.1e-19 100.1 81 61.7
AT2G47910 Arabidopsis thaliana HOM05D007076 ORTHO05D008800 1.9e-19 99.4 84 60.7
Medtr4g116350 Medicago truncatula HOM05D007076 ORTHO05D008800 1.9e-19 99.4 80 58.8
Nitab4.5_0008829g0010 Nicotiana tabacum HOM05D007076 ORTHO05D008800 2.5e-19 99.0 80 60.0
Oeu058595.1 Olea europaea HOM05D007076 ORTHO05D008800 3.2e-19 98.6 85 60.0
TPR.G15804 Trifolium pratense HOM05D007076 ORTHO05D008800 3.2e-19 98.6 77 61.0
Psat7g049360 Pisum sativum HOM05D007076 ORTHO05D008800 4.2e-19 98.2 80 57.5
Potri.006G060100 Populus trichocarpa HOM05D007076 ORTHO05D008800 4.2e-19 98.2 76 64.5
BcaB06g29501 Brassica carinata HOM05D007076 ORTHO05D008800 5.5e-19 97.8 84 59.5
CiPaw.15G183500 Carya illinoinensis HOM05D007076 ORTHO05D008800 5.5e-19 97.8 80 57.5
Atru.BG.23.p Acer truncatum HOM05D007076 ORTHO05D008800 7.2e-19 97.4 79 59.5
ATR0681G287 Amborella trichopoda HOM05D007076 ORTHO05D008800 7.2e-19 97.4 80 55.0
CARHR143300 Cardamine hirsuta HOM05D007076 ORTHO05D008800 7.2e-19 97.4 80 61.2
Manes.14G120300 Manihot esculenta HOM05D007076 ORTHO05D008800 7.2e-19 97.4 81 59.3
Peaxi162Scf00088g00017 Petunia axillaris HOM05D007076 ORTHO05D008800 7.2e-19 97.4 74 62.2
Solyc07g007280.4 Solanum lycopersicum HOM05D007076 ORTHO05D008800 7.2e-19 97.4 74 62.2
CsaV3_1G028410 Cucumis sativus L. HOM05D007076 ORTHO05D008800 9.4e-19 97.1 77 61.0
Glyma.17G106200 Glycine max HOM05D007076 ORTHO05D008800 9.4e-19 97.1 80 57.5
Glyma.13G164900 Glycine max HOM05D007076 ORTHO05D008800 1.2e-18 96.7 80 57.5
Thhalv10001598m.g Eutrema salsugineum HOM05D007076 ORTHO05D008800 1.6e-18 96.3 80 58.8
SalBow1G5229 Salvia bowleyana HOM05D007076 ORTHO05D008800 2.1e-18 95.9 83 57.8
Aa31LG1G29340 Aethionema arabicum HOM05D007076 ORTHO05D008800 2.7e-18 95.5 80 56.2
AL4G47500 Arabidopsis lyrata HOM05D007076 ORTHO05D008800 2.7e-18 95.5 81 63.0
CAN.G728.2 Capsicum annuum HOM05D007076 ORTHO05D008800 2.7e-18 95.5 81 56.8
Cc06_g07520 Coffea canephora HOM05D007076 ORTHO05D008800 2.7e-18 95.5 81 59.3
Sabra06G0043400 Salix brachista HOM05D000638 ORTHO05D000801 2.7e-18 95.5 83 61.4
Duzib187G0567 Durio zibethinus HOM05D007076 ORTHO05D008800 3.6e-18 95.1 70 64.3
MSTRG.19622 Avicennia marina HOM05D007076 ORTHO05D008800 4.7e-18 94.7 83 59.0
Carub.0004s3063 Capsella rubella HOM05D007076 ORTHO05D008800 4.7e-18 94.7 78 60.3
CDE05G2705 Ceratophyllum demersum HOM05D007076 ORTHO05D008800 6.1e-18 94.4 82 54.9
Os08g0167500 Oryza sativa ssp. japonica HOM05D007076 ORTHO05D008800 6.1e-18 94.4 81 58.0
Sopen07g003340 Solanum pennellii HOM05D007076 ORTHO05D008800 1.0e-17 93.6 74 60.8
Zm00001eb172070 Zea mays HOM05D007076 ORTHO05D008800 1.8e-17 92.8 81 55.6
Aqoxy7G02462 Aquilegia oxysepala HOM05D007076 ORTHO05D008800 2.3e-17 92.4 84 58.3
Migut.J01262 Erythranthe guttata HOM05D007076 ORTHO05D008800 2.3e-17 92.4 83 59.0
FAN28G0280 Fragaria x ananassa HOM05D007076 ORTHO05D008800 3.0e-17 92.0 74 59.5
Lalb_Chr07g0179431 Lupinus albus HOM05D007076 ORTHO05D008800 4.0e-17 91.7 80 52.5
THA.LOC104817530 Tarenaya hassleriana HOM05D007076 ORTHO05D008800 4.0e-17 91.7 83 53.0
vmacro21890 Vaccinium macrocarpon HOM05D007076 ORTHO05D008800 4.0e-17 91.7 77 57.1
Sp4g29830 Schrenkiella parvula HOM05D007076 ORTHO05D008800 8.8e-17 90.5 80 55.0
Lsat_1_v5_gn_7_46141 Lactuca sativa HOM05D007076 ORTHO05D008800 2.6e-16 89.0 74 58.1
PGSC0003DMG400030692 Solanum tuberosum HOM05D007076 ORTHO05D008800 2.6e-16 89.0 74 58.1
Cpa.g.sc46.76 Carica papaya HOM05D007076 ORTHO05D008800 5.7e-16 87.8 84 53.6
DCAR_017767 Daucus carota HOM05D007076 ORTHO05D008800 5.7e-16 87.8 80 50.0
Lj9A706G31 Lonicera japonica HOM05D007076 ORTHO05D008800 9.7e-16 87.0 82 51.2
Rhsim01G0051700 Rhododendron simsii HOM05D007076 ORTHO05D008800 9.7e-16 87.0 82 53.7
C04p73020 Brassica napus HOM05D007076 ORTHO05D008800 1.3e-15 86.7 75 60.0
AUR62041461 Chenopodium quinoa HOM05D007076 ORTHO05D008800 2.2e-15 85.9 77 53.2
Ah.00g000030 Amaranthus hybridus HOM05D007076 ORTHO05D008800 2.8e-15 85.5 77 54.5
SMO119G0333 Selaginella moellendorffii HOM05D007076 ORTHO05D008800 1.1e-14 83.6 75 52.0
EL10Ac8g18804 Beta vulgaris HOM05D007076 ORTHO05D008800 5.3e-14 81.3 77 51.9
ECA240G2388 Erigeron canadensis HOM05D007076 ORTHO05D008800 5.3e-14 81.3 71 52.1
HanXRQChr09g0243091 Helianthus annuus HOM05D007076 ORTHO05D008800 5.9e-13 77.8 78 50.0
Nn1g04045 Nelumbo nucifera HOM05D007076 ORTHO05D008800 5.9e-13 77.8 39 87.2
Migut.J01256 Erythranthe guttata HOM05D007076 ORTHO05D008800 5.0e-12 74.7 67 58.2
Mapoly0095s0056 Marchantia polymorpha HOM05D007076 ORTHO05D008800 6.5e-12 74.3 87 44.8
AagrBONN_evm.TU.Sc2ySwM_362.135 Anthoceros agrestis HOM05D007076 ORTHO05D008800 2.5e-11 72.4 87 40.2
arahy.Tifrunner.gnm1.ann1.W7VCER Arachis hypogaea HOM05D007076 ORTHO05D008800 4.2e-11 71.6 79 48.1
unitig_37.g12628 Utricularia gibba HOM05D007076 ORTHO05D008800 8.0e-10 67.4 68 45.6
Pp3c22_2510 Physcomitrium patens HOM05D007076 ORTHO05D008800 5.2e-09 64.7 86 41.9
AUR62011242 Chenopodium quinoa HOM05D007076 ORTHO05D008800 2.6e-08 62.4 46 58.7
arahy.Tifrunner.gnm1.ann1.80N34X Arachis hypogaea HOM05D007076 ORTHO05D008800 1.3e-07 60.1 46 60.9


User provided reference genes

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