Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g02268 Nelumbo nucifera HOM05D006774 ORTHO05D008411 5.0e-235 817.4 410 100.0
TAR633G1323 Trochodendron aralioides HOM05D006774 ORTHO05D008411 2.8e-169 599.0 397 76.6
Aqoxy5G00494 Aquilegia oxysepala HOM05D006774 ORTHO05D008411 3.1e-160 568.9 396 69.7
PSO782G5565 Papaver somniferum HOM05D006774 ORTHO05D008411 1.2e-143 513.8 405 64.4
PSO478G4979 Papaver somniferum HOM05D006774 ORTHO05D008411 2.0e-143 513.1 408 64.0
MBI04_g29615_MAGBIO Magnolia biondii HOM05D006774 ORTHO05D008411 7.7e-143 511.1 356 68.8
CSS0040526 Camellia sinensis var. sinensis HOM05D006774 ORTHO05D008411 1.2e-132 477.2 400 61.0
CSS0019331 Camellia sinensis var. sinensis HOM05D006774 ORTHO05D008411 6.1e-132 474.9 359 64.6
CiPaw.10G139100 Carya illinoinensis HOM05D006774 ORTHO05D008411 1.0e-131 474.2 398 59.3
Sopen01g042680 Solanum pennellii HOM05D006774 ORTHO05D008411 2.2e-129 466.5 406 57.4
CANSAT54G0432 Cannabis sativa HOM05D006774 ORTHO05D008411 6.3e-129 464.9 404 57.2
MD12G1218600 Malus domestica HOM05D006774 ORTHO05D008411 9.1e-128 461.1 358 61.5
PGSC0003DMG400024686 Solanum tuberosum HOM05D006774 ORTHO05D008411 2.6e-127 459.5 403 57.1
Haze_04191 Corylus avellana HOM05D006774 ORTHO05D008411 1.2e-124 450.7 399 55.9
PGR031G3046 Punica granatum HOM05D006774 ORTHO05D008411 1.2e-124 450.7 403 56.6
MSTRG.20428 Avicennia marina HOM05D006774 ORTHO05D008411 2.1e-124 449.9 409 55.0
QL03p007112 Quercus lobata HOM05D006774 ORTHO05D008411 3.6e-124 449.1 401 56.6
Gohir.A13G107700 Gossypium hirsutum HOM05D006774 ORTHO05D008411 2.3e-123 446.4 401 56.4
RhsimUnG0226700 Rhododendron simsii HOM05D006774 ORTHO05D008411 3.0e-123 446.0 358 60.6
vmacro05013 Vaccinium macrocarpon HOM05D006774 ORTHO05D008411 3.3e-122 442.6 357 60.5
vmacro23279 Vaccinium macrocarpon HOM05D006774 ORTHO05D008411 3.3e-122 442.6 357 60.5
Atru.chr2.394 Acer truncatum HOM05D006774 ORTHO05D008411 4.4e-122 442.2 399 58.4
MD04G1204900 Malus domestica HOM05D006774 ORTHO05D008411 4.4e-122 442.2 404 55.4
Eucgr.C01256 Eucalyptus grandis HOM05D006774 ORTHO05D008411 1.7e-121 440.3 356 60.1
TWI12G1162 Tripterygium wilfordii HOM05D006774 ORTHO05D008411 8.2e-121 438.0 399 55.6
Sed0009699 Sechium edule HOM05D006774 ORTHO05D008411 1.8e-120 436.8 398 56.8
CAN.G1034.42 Capsicum annuum HOM05D006774 ORTHO05D008411 2.4e-120 436.4 408 54.2
FAN09G1854 Fragaria x ananassa HOM05D006774 ORTHO05D008411 2.4e-120 436.4 397 53.1
Lj9C83T13 Lonicera japonica HOM05D006774 ORTHO05D008411 2.4e-120 436.4 410 54.4
EL10Ac4g09357 Beta vulgaris HOM05D006774 ORTHO05D008411 7.0e-120 434.9 409 52.6
Cfa006593 Carpinus fangiana HOM05D006774 ORTHO05D008411 1.2e-119 434.1 399 54.6
CDE05G2690 Ceratophyllum demersum HOM05D006774 ORTHO05D008411 1.6e-119 433.7 345 58.3
TWI56G0431 Tripterygium wilfordii HOM05D006774 ORTHO05D008411 2.0e-119 433.3 402 54.5
ATR0332G083 Amborella trichopoda HOM05D006774 ORTHO05D008411 4.5e-119 432.2 393 55.2
COL.COLO4_13460 Corchorus olitorius HOM05D006774 ORTHO05D008411 7.7e-119 431.4 409 55.0
Prupe.6G324900 Prunus persica HOM05D006774 ORTHO05D008411 1.3e-118 430.6 405 53.3
Thecc.05G302500 Theobroma cacao HOM05D006774 ORTHO05D008411 1.7e-118 430.3 406 54.7
ClCG03G016980 Citrullus lanatus HOM05D006774 ORTHO05D008411 2.9e-118 429.5 415 54.5
Cpa.g.sc48.60 Carica papaya HOM05D006774 ORTHO05D008411 4.2e-117 425.6 400 54.5
CsaV3_1G038960 Cucumis sativus L. HOM05D006774 ORTHO05D008411 4.2e-117 425.6 360 58.9
FvH4_6g06010 Fragaria vesca HOM05D006774 ORTHO05D008411 5.5e-117 425.2 399 52.6
Gorai.013G124300 Gossypium raimondii HOM05D006774 ORTHO05D008411 5.5e-117 425.2 401 54.6
Hund07075 Selenicereus undatus HOM05D006774 ORTHO05D008411 1.2e-116 424.1 346 59.0
Duzib177G0798 Durio zibethinus HOM05D006774 ORTHO05D008411 2.1e-116 423.3 406 54.7
Lj9C82T10 Lonicera japonica HOM05D006774 ORTHO05D008411 6.1e-116 421.8 413 53.0
Duzib128G0809 Durio zibethinus HOM05D006774 ORTHO05D008411 8.0e-116 421.4 362 58.0
FAN02G0725 Fragaria x ananassa HOM05D006774 ORTHO05D008411 1.4e-115 420.6 398 52.3
FAN05G2700 Fragaria x ananassa HOM05D006774 ORTHO05D008411 1.4e-115 420.6 343 57.1
FAN05G0244 Fragaria x ananassa HOM05D006774 ORTHO05D008411 1.2e-114 417.5 344 57.6
Potri.013G021500 Populus trichocarpa HOM05D006774 ORTHO05D008411 3.4e-114 416.0 414 53.9
BcaC09g49602 Brassica carinata HOM05D006774 ORTHO05D008411 4.4e-114 415.6 399 54.1
C01p34610 Brassica napus HOM05D006774 ORTHO05D008411 5.7e-114 415.2 399 54.4
BolC1t03432H Brassica oleracea HOM05D006774 ORTHO05D008411 5.7e-114 415.2 399 54.4
Aa31LG2G11700 Aethionema arabicum HOM05D006774 ORTHO05D008411 7.5e-114 414.8 402 55.2
BraA01t02861Z Brassica rapa HOM05D006774 ORTHO05D008411 7.5e-114 414.8 399 54.4
MELO3C015322.2 Cucumis melo HOM05D006774 ORTHO05D008411 7.5e-114 414.8 405 54.6
Sc09g0003160 Simmondsia chinensis HOM05D006774 ORTHO05D008411 2.8e-113 412.9 399 51.9
THA.LOC104805877 Tarenaya hassleriana HOM05D006774 ORTHO05D008411 2.8e-113 412.9 401 53.1
AL1G65540 Arabidopsis lyrata HOM05D006774 ORTHO05D008411 3.7e-113 412.5 401 54.4
A01p27210 Brassica napus HOM05D006774 ORTHO05D008411 4.8e-113 412.1 399 54.1
Glyma.03G237400 Glycine max HOM05D006774 ORTHO05D008411 6.3e-113 411.8 399 52.4
Carub.0002s0819 Capsella rubella HOM05D006774 ORTHO05D008411 8.3e-113 411.4 400 54.5
Ciclev10001021m.g Citrus clementina HOM05D006774 ORTHO05D008411 1.4e-112 410.6 405 54.6
RcHm_v2.0_Chr3g0454971 Rosa chinensis HOM05D006774 ORTHO05D008411 2.4e-112 409.8 418 51.4
Glyma.19G235000 Glycine max HOM05D006774 ORTHO05D008411 4.1e-112 409.1 345 56.2
arahy.Tifrunner.gnm1.ann1.ST8CS6 Arachis hypogaea HOM05D006774 ORTHO05D008411 5.4e-112 408.7 341 59.2
arahy.Tifrunner.gnm1.ann1.V1E923 Arachis hypogaea HOM05D006774 ORTHO05D008411 9.1e-112 407.9 341 59.2
Ah.06g189400 Amaranthus hybridus HOM05D006774 ORTHO05D008411 4.5e-111 405.6 351 55.3
AUR62000820 Chenopodium quinoa HOM05D006774 ORTHO05D008411 7.7e-111 404.8 315 59.0
SpUn0004_0080 Schrenkiella parvula HOM05D006774 ORTHO05D008411 7.7e-111 404.8 406 54.4
SpUn0066_0030 Schrenkiella parvula HOM05D006774 ORTHO05D008411 7.7e-111 404.8 406 54.4
Lj1g0013332 Lotus japonicus HOM05D006774 ORTHO05D008411 1.7e-110 403.7 412 51.2
Migut.N02011 Erythranthe guttata HOM05D006774 ORTHO05D008411 3.8e-110 402.5 414 50.7
Cc02_g33360 Coffea canephora HOM05D006774 ORTHO05D008411 1.9e-109 400.2 352 54.8
Thhalv10023440m.g Eutrema salsugineum HOM05D006774 ORTHO05D008411 9.4e-109 397.9 399 52.6
Lj9C84T1 Lonicera japonica HOM05D006774 ORTHO05D008411 1.2e-108 397.5 332 57.8
BcaB04g20150 Brassica carinata HOM05D006774 ORTHO05D008411 1.8e-107 393.7 402 52.5
VMungo0540G2441 Vigna mungo HOM05D006774 ORTHO05D008411 2.0e-106 390.2 336 55.7
Lsat_1_v5_gn_9_86761 Lactuca sativa HOM05D006774 ORTHO05D008411 3.4e-106 389.4 402 51.2
Sabra13G0023900 Salix brachista HOM05D006774 ORTHO05D008411 1.7e-105 387.1 354 56.2
Phvul.006G091800 Phaseolus vulgaris HOM05D006774 ORTHO05D008411 3.7e-105 386.0 340 55.9
AT1G54990 Arabidopsis thaliana HOM05D006774 ORTHO05D008411 4.1e-104 382.5 401 50.9
CARHR284430 Cardamine hirsuta HOM05D006774 ORTHO05D008411 1.6e-103 380.6 399 49.9
Dinv40294 Davidia involucrata HOM05D006774 ORTHO05D008411 1.0e-102 377.9 309 61.8
Lalb_Chr18g0045661 Lupinus albus HOM05D006774 ORTHO05D008411 1.0e-102 377.9 347 53.6
Ca_05814_v3 Cicer arietinum L. HOM05D006774 ORTHO05D008411 5.0e-102 375.6 338 55.3
Medtr7g113420 Medicago truncatula HOM05D006774 ORTHO05D008411 2.1e-100 370.2 363 52.1
HanXRQChr11g0338551 Helianthus annuus HOM05D006774 ORTHO05D008411 8.0e-100 368.2 400 49.2
Psat0s3041g0040 Pisum sativum HOM05D006774 ORTHO05D008411 8.9e-99 364.8 358 51.7
Manes.09G167600 Manihot esculenta HOM05D006774 ORTHO05D008411 5.7e-98 362.1 403 48.4
GSVIVG01000080001 Vitis vinifera HOM05D006774 ORTHO05D008411 8.3e-97 358.2 270 65.2
AUR62005151 Chenopodium quinoa HOM05D006774 ORTHO05D008411 1.6e-87 327.4 267 57.3
Gohir.D13G110900 Gossypium hirsutum HOM05D006774 ORTHO05D008411 1.1e-85 321.2 264 57.2
PSO478G2742 Papaver somniferum HOM05D006774 ORTHO05D008411 8.3e-81 305.1 318 55.0
TPR.G33221 Trifolium pratense HOM05D006774 ORTHO05D008411 8.3e-81 305.1 274 55.1
ECA236G1211 Erigeron canadensis HOM05D000208 ORTHO05D000130 2.5e-77 293.5 258 54.7
unitig_736.g22755 Utricularia gibba HOM05D006774 ORTHO05D008411 3.4e-74 283.1 397 39.5
PSO782G1046 Papaver somniferum HOM05D006774 ORTHO05D008411 8.9e-67 258.5 294 52.0
Actinidia05698 Actinidia chinensis HOM05D006774 ORTHO05D008411 5.1e-62 242.7 174 65.5
Pp3c11_22860 Physcomitrium patens HOM05D006774 ORTHO05D008411 6.9e-59 232.3 369 35.5
Zm00001eb197590 Zea mays HOM05D006774 ORTHO05D008411 4.4e-58 229.6 350 37.1
Os11g0544100 Oryza sativa ssp. japonica HOM05D006774 ORTHO05D008411 2.2e-57 227.3 361 37.7
Atru.chr12.689 Acer truncatum HOM05D006774 ORTHO05D008411 3.9e-46 189.9 197 52.8
Solyc01g099120.4 Solanum lycopersicum HOM05D006774 ORTHO05D008411 3.8e-41 173.3 177 52.5
Nitab4.5_0005541g0040 Nicotiana tabacum HOM05D006774 ORTHO05D008411 1.1e-40 171.8 176 55.1
Nitab4.5_0000137g0150 Nicotiana tabacum HOM05D006774 ORTHO05D008411 3.2e-40 170.2 178 53.9
Peaxi162Scf00037g00517 Petunia axillaris HOM05D006774 ORTHO05D008411 2.1e-39 167.5 184 50.0
SMO145G0196 Selaginella moellendorffii HOM05D006774 ORTHO05D008411 3.9e-38 163.3 380 30.0
HPP92_006104 Vanilla planifolia HOM05D006774 ORTHO05D008411 9.4e-24 115.5 129 45.7
Oeu035485.2 Olea europaea HOM05D006774 ORTHO05D001341 1.4e-14 85.1 104 48.1
Nn3g21217 Nelumbo nucifera HOM05D006774 ORTHO05D008411 2.4e-11 74.3 42 85.7


User provided reference genes

Program Settings