Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g02244 Nelumbo nucifera HOM05D006303 ORTHO05D008007 8.9e-153 543.9 343 100.0
Nn4g26265 Nelumbo nucifera HOM05D006303 ORTHO05D008007 1.2e-117 427.2 333 80.5
TAR365G0083 Trochodendron aralioides HOM05D006303 ORTHO05D008007 6.9e-97 358.2 333 71.5
CiPaw.01G163800 Carya illinoinensis HOM05D006303 ORTHO05D008007 5.5e-94 348.6 347 64.6
Manes.15G026800 Manihot esculenta HOM05D006303 ORTHO05D008007 1.1e-91 340.9 353 63.7
Manes.03G181100 Manihot esculenta HOM05D006303 ORTHO05D008007 5.3e-89 332.0 356 62.9
Cc03_g03480 Coffea canephora HOM05D006303 ORTHO05D008007 1.0e-87 327.8 368 63.0
CiPaw.02G095400 Carya illinoinensis HOM05D006303 ORTHO05D008007 8.0e-85 318.2 353 61.8
Nn2g13850 Nelumbo nucifera HOM05D006303 ORTHO05D008007 1.0e-84 317.8 300 71.7
Duzib052G1015 Durio zibethinus HOM05D006303 ORTHO05D008007 2.6e-83 313.2 367 55.9
QL06p003344 Quercus lobata HOM05D006303 ORTHO05D008007 5.7e-83 312.0 355 63.9
Haze_00877 Corylus avellana HOM05D006303 ORTHO05D008007 9.7e-83 311.2 338 63.3
Cfa015618 Carpinus fangiana HOM05D006303 ORTHO05D008007 4.8e-82 308.9 343 61.8
TWI09G0488 Tripterygium wilfordii HOM05D006303 ORTHO05D008007 1.8e-81 307.0 350 64.9
TWI53G0528 Tripterygium wilfordii HOM05D006303 ORTHO05D008007 2.0e-80 303.5 314 69.1
VMungo1215G3149 Vigna mungo HOM05D006303 ORTHO05D008007 2.2e-79 300.1 356 58.4
Potri.010G090500 Populus trichocarpa HOM05D006303 ORTHO05D008007 3.2e-78 296.2 373 58.7
Sabra10G0052900 Salix brachista HOM05D006303 ORTHO05D008007 7.2e-78 295.0 368 54.9
Aqoxy5G00502 Aquilegia oxysepala HOM05D006303 ORTHO05D008007 6.1e-77 292.0 352 57.1
Lj1g0001361 Lotus japonicus HOM05D006303 ORTHO05D008007 8.0e-77 291.6 368 57.6
COL.COLO4_06194 Corchorus olitorius HOM05D006303 ORTHO05D008007 2.3e-76 290.0 359 55.4
Thecc.04G227500 Theobroma cacao HOM05D006303 ORTHO05D008007 2.3e-76 290.0 372 55.6
Gohir.A09G214600 Gossypium hirsutum HOM05D006303 ORTHO05D008007 5.2e-76 288.9 357 62.2
FvH4_4g15080 Fragaria vesca HOM05D006303 ORTHO05D008007 1.2e-75 287.7 369 56.1
Gorai.006G237600 Gossypium raimondii HOM05D006303 ORTHO05D008007 1.5e-75 287.3 357 61.1
FAN12G1910 Fragaria x ananassa HOM05D006303 ORTHO05D008007 3.4e-75 286.2 369 55.8
Dinv38426 Davidia involucrata HOM05D006303 ORTHO05D008007 1.7e-74 283.9 340 63.8
Nitab4.5_0000260g0090 Nicotiana tabacum HOM05D006303 ORTHO05D008007 1.7e-74 283.9 352 61.4
FAN17G3084 Fragaria x ananassa HOM05D006303 ORTHO05D008007 2.2e-74 283.5 371 57.7
FAN07G1279 Fragaria x ananassa HOM05D006303 ORTHO05D008007 2.8e-74 283.1 370 52.4
FAN22G0434 Fragaria x ananassa HOM05D006303 ORTHO05D008007 2.8e-74 283.1 369 54.5
Medtr5g005960 Medicago truncatula HOM05D006303 ORTHO05D008007 6.3e-74 282.0 351 57.0
Phvul.002G047200 Phaseolus vulgaris HOM05D006303 ORTHO05D008007 1.4e-73 280.8 356 55.6
Nitab4.5_0007531g0010 Nicotiana tabacum HOM05D006303 ORTHO05D008007 1.6e-72 277.3 355 60.0
Glyma.11G004400 Glycine max HOM05D006303 ORTHO05D008007 5.9e-72 275.4 377 55.4
Gohir.D09G217100 Gossypium hirsutum HOM05D006303 ORTHO05D008007 1.0e-71 274.6 356 59.8
Atru.chr4.2516 Acer truncatum HOM05D006303 ORTHO05D008007 1.3e-71 274.2 356 61.8
Hma1.2p1_0517F.1_g171030 Hydrangea macrophylla HOM05D006303 ORTHO05D008007 1.9e-70 270.4 344 59.0
Psat4g211440 Pisum sativum HOM05D006303 ORTHO05D008007 2.5e-70 270.0 355 56.1
Duzib212G0816 Durio zibethinus HOM05D006303 ORTHO05D008007 4.2e-70 269.2 369 55.8
PGSC0003DMG400031852 Solanum tuberosum HOM05D006303 ORTHO05D008007 4.2e-70 269.2 354 56.2
ClCG06G006020 Citrullus lanatus HOM05D006303 ORTHO05D008007 9.4e-70 268.1 368 53.5
Cpa.g.sc147.34 Carica papaya HOM05D006303 ORTHO05D008007 2.1e-69 266.9 340 56.5
HanXRQChr15g0466041 Helianthus annuus HOM05D006303 ORTHO05D008007 4.7e-69 265.8 341 58.4
Lsat_1_v5_gn_5_148441 Lactuca sativa HOM05D006303 ORTHO05D008007 6.1e-69 265.4 348 53.7
Solyc09g075750.1 Solanum lycopersicum HOM05D006303 ORTHO05D008007 6.1e-69 265.4 350 56.0
Ciclev10005353m.g Citrus clementina HOM05D006303 ORTHO05D008007 1.4e-68 264.2 364 62.1
MELO3C014489.2 Cucumis melo HOM05D006303 ORTHO05D008007 2.3e-68 263.5 357 51.0
Sopen09g030560 Solanum pennellii HOM05D006303 ORTHO05D008007 1.2e-67 261.2 354 56.2
Oeu034363.1 Olea europaea HOM05D006303 ORTHO05D008007 7.5e-67 258.5 351 60.4
Peaxi162Scf00437g00041 Petunia axillaris HOM05D006303 ORTHO05D008007 7.5e-67 258.5 370 53.8
ECA234G3153 Erigeron canadensis HOM05D006303 ORTHO05D008007 9.8e-67 258.1 346 54.6
Sed0009344 Sechium edule HOM05D006303 ORTHO05D008007 6.3e-66 255.4 346 48.6
TPR.G37902 Trifolium pratense HOM05D006303 ORTHO05D008007 6.3e-66 255.4 355 53.2
CsaV3_6G038260 Cucumis sativus L. HOM05D006303 ORTHO05D008007 2.0e-64 250.4 358 50.8
Oeu004490.1 Olea europaea HOM05D006303 ORTHO05D008007 2.7e-64 250.0 349 55.3
arahy.Tifrunner.gnm1.ann1.RSQ2PF Arachis hypogaea HOM05D006303 ORTHO05D008007 5.9e-64 248.8 322 62.4
MSTRG.4016 Avicennia marina HOM05D006303 ORTHO05D008007 2.5e-62 243.4 365 50.7
Ca_24387_v3 Cicer arietinum L. HOM05D006303 ORTHO05D008007 7.2e-62 241.9 320 55.3
Dinv44508 Davidia involucrata HOM05D006303 ORTHO05D008007 1.4e-60 237.7 363 52.6
DCAR_027185 Daucus carota HOM05D006303 ORTHO05D008007 6.8e-60 235.3 339 56.3
PGR004G2192 Punica granatum HOM05D006303 ORTHO05D008007 8.9e-60 235.0 354 52.8
CANSAT78G1152 Cannabis sativa HOM05D006303 ORTHO05D008007 2.4e-57 226.9 410 49.3
MD16G1188900 Malus domestica HOM05D006303 ORTHO05D008007 3.2e-57 226.5 345 56.2
SalBow5G2627 Salvia bowleyana HOM05D006303 ORTHO05D008007 7.0e-57 225.3 351 55.6
SalBow5G4234 Salvia bowleyana HOM05D006303 ORTHO05D008007 3.5e-56 223.0 356 54.8
MSTRG.24747 Avicennia marina HOM05D006303 ORTHO05D008007 7.8e-56 221.9 347 48.4
THA.LOC104802760 Tarenaya hassleriana HOM05D006303 ORTHO05D008007 1.7e-55 220.7 322 57.5
MD13G1188500 Malus domestica HOM05D006303 ORTHO05D008007 3.9e-55 219.5 348 52.0
Aqoxy2G03353 Aquilegia oxysepala HOM05D006303 ORTHO05D008007 6.6e-55 218.8 304 59.2
BolC9t53571H Brassica oleracea HOM05D006303 ORTHO05D008007 8.6e-55 218.4 329 55.6
Ah.04g154500 Amaranthus hybridus HOM05D006303 ORTHO05D008007 4.3e-54 216.1 350 51.1
BcaC04g23610 Brassica carinata HOM05D006303 ORTHO05D008007 7.3e-54 215.3 329 55.0
C09p06490 Brassica napus HOM05D006303 ORTHO05D008007 5.2e-52 209.1 323 53.9
BcaNung03972 Brassica carinata HOM05D006303 ORTHO05D008007 8.9e-52 208.4 326 56.7
BcaB04g19742 Brassica carinata HOM05D006303 ORTHO05D008007 1.5e-51 207.6 330 48.5
Prupe.1G155600 Prunus persica HOM05D006303 ORTHO05D008007 2.9e-50 203.4 331 53.5
A06p36730 Brassica napus HOM05D006303 ORTHO05D008007 4.9e-50 202.6 320 52.8
C07p41810 Brassica napus HOM05D006303 ORTHO05D008007 4.9e-50 202.6 324 52.8
BraA06t26595Z Brassica rapa HOM05D006303 ORTHO05D008007 4.9e-50 202.6 320 52.8
A09p05910 Brassica napus HOM05D006303 ORTHO05D008007 8.3e-50 201.8 324 55.2
BcaNung02811 Brassica carinata HOM05D006303 ORTHO05D008007 2.4e-49 200.3 324 52.5
BolC7t44712H Brassica oleracea HOM05D006303 ORTHO05D008007 2.4e-49 200.3 324 52.5
AL6G38240 Arabidopsis lyrata HOM05D006303 ORTHO05D008007 4.6e-48 196.1 333 52.3
PSO384G0046 Papaver somniferum HOM05D006303 ORTHO05D008007 4.6e-48 196.1 381 42.8
BraA09t36233Z Brassica rapa HOM05D006303 ORTHO05D008007 3.0e-47 193.4 322 52.2
Lsat_1_v5_gn_7_65920 Lactuca sativa HOM05D006303 ORTHO05D008007 2.5e-46 190.3 344 44.5
MBI17_g34761_MAGBIO Magnolia biondii HOM05D006303 ORTHO05D008007 4.3e-46 189.5 327 47.7
Thhalv10004558m.g Eutrema salsugineum HOM05D006303 ORTHO05D008007 1.6e-45 187.6 342 51.8
Nn3g18018 Nelumbo nucifera HOM05D006303 ORTHO05D008007 2.1e-45 187.2 150 69.3
Sp2g21520 Schrenkiella parvula HOM05D006303 ORTHO05D008007 6.4e-42 175.6 361 47.6
CARHR187140 Cardamine hirsuta HOM05D006303 ORTHO05D008007 1.1e-41 174.9 345 51.3
AT5G26230 Arabidopsis thaliana HOM05D006303 ORTHO05D008007 3.2e-41 173.3 351 48.1
Sc13g0004270 Simmondsia chinensis HOM05D006303 ORTHO05D008007 4.1e-41 172.9 353 42.8
Carub.0006s2405 Capsella rubella HOM05D006303 ORTHO05D008007 9.2e-41 171.8 348 49.4
PSO135G0705 Papaver somniferum HOM05D006303 ORTHO05D008007 1.6e-40 171.0 370 39.2
ClCG05G005270 Citrullus lanatus HOM05D006303 ORTHO05D008007 1.1e-38 164.9 337 45.4
MELO3C006546.2 Cucumis melo HOM05D006303 ORTHO05D008007 3.3e-38 163.3 334 46.4
CsaV3_3G013490 Cucumis sativus L. HOM05D006303 ORTHO05D008007 2.1e-37 160.6 344 45.9
HPP92_003595 Vanilla planifolia HOM05D006303 ORTHO05D008007 1.4e-36 157.9 348 46.8
arahy.Tifrunner.gnm1.ann1.S8XWMG Arachis hypogaea HOM05D006303 ORTHO05D008007 2.3e-36 157.1 335 48.4
arahy.Tifrunner.gnm1.ann1.KMTU0V Arachis hypogaea HOM05D006303 ORTHO05D008007 4.0e-36 156.4 329 48.0
SalBow2G0078 Salvia bowleyana HOM05D006303 ORTHO05D008007 6.8e-36 155.6 340 47.6
PSO675G0548 Papaver somniferum HOM05D006303 ORTHO05D008007 1.2e-35 154.8 361 47.1
PSO717G0040 Papaver somniferum HOM05D006303 ORTHO05D008007 1.2e-35 154.8 361 47.4
EL10As3g23363 Beta vulgaris HOM05D006303 ORTHO05D008007 5.8e-35 152.5 373 44.8
Zm00001eb350820 Zea mays HOM05D006303 ORTHO05D008007 9.9e-35 151.8 327 45.0
Sed0019333 Sechium edule HOM05D006303 ORTHO05D008007 1.3e-34 151.4 339 44.5
Migut.G00317 Erythranthe guttata HOM05D006303 ORTHO05D008007 6.6e-31 139.0 243 46.9
GSVIVG01017928001 Vitis vinifera HOM05D006303 ORTHO05D008007 8.6e-31 138.7 335 36.4
Aa31LG11G10320 Aethionema arabicum HOM05D006303 ORTHO05D008007 4.3e-30 136.3 231 55.0
Nn3g18017 Nelumbo nucifera HOM05D006303 ORTHO05D008007 9.3e-25 118.6 100 79.0
Os05g0390600 Oryza sativa ssp. japonica HOM05D006303 ORTHO05D008007 1.2e-24 118.2 382 39.5
AUR62038095 Chenopodium quinoa HOM05D006303 ORTHO05D008007 7.8e-24 115.5 169 45.0
Actinidia40170 Actinidia chinensis HOM05D006303 ORTHO05D008007 1.7e-23 114.4 165 49.1
Rhsim04G0205200 Rhododendron simsii HOM05D006303 ORTHO05D008007 1.7e-23 114.4 173 46.8
SGA_v2.0_scaffold10G05105 Striga asiatica HOM05D006303 ORTHO05D008007 3.0e-23 113.6 230 44.8
SGA_v2.0_scaffold257G45734 Striga asiatica HOM05D006303 ORTHO05D008007 6.9e-20 102.4 244 38.5
Lj6C598T9 Lonicera japonica HOM05D006303 ORTHO05D008007 9.9e-19 98.6 90 65.6
Nn2g12462 Nelumbo nucifera HOM05D006303 ORTHO05D008007 2.1e-16 90.9 92 64.1
AUR62038636 Chenopodium quinoa HOM05D006303 ORTHO05D008007 1.3e-15 88.2 310 37.4
ATR0626G102 Amborella trichopoda HOM05D006303 ORTHO05D008007 9.6e-14 82.0 226 38.9
SEGI_38862 Sequoiadendron giganteum HOM05D006303 ORTHO05D008007 6.9e-12 75.9 156 40.4
Nn2g11148 Nelumbo nucifera HOM05D006303 ORTHO05D008007 1.2e-08 65.1 154 54.5
Cc10_g04260 Coffea canephora HOM05D004504 ORTHO05D005324 1.3e-07 61.6 323 24.8
DCAR_019457 Daucus carota HOM05D004504 ORTHO05D005324 1.8e-07 61.2 348 27.6
Gohir.D06G015500 Gossypium hirsutum HOM05D004504 ORTHO05D005324 5.1e-07 59.7 292 26.7
CsaV3_2G027990 Cucumis sativus L. HOM05D004504 ORTHO05D005324 1.1e-06 58.5 351 25.1
Oeu029881.1 Olea europaea HOM05D004504 ORTHO05D005324 1.1e-06 58.5 90 44.4
Phvul.009G064300 Phaseolus vulgaris HOM05D004504 ORTHO05D005324 1.1e-06 58.5 353 26.3
Migut.N02706 Erythranthe guttata HOM05D004504 ORTHO05D005324 1.9e-06 57.8 94 39.4
Cpa.g.sc49.5 Carica papaya HOM05D004504 ORTHO05D005324 2.5e-06 57.4 352 26.1
VMungo1309G0174 Vigna mungo HOM05D004504 ORTHO05D005324 2.5e-06 57.4 363 26.4
Eucgr.F00237 Eucalyptus grandis HOM05D004504 ORTHO05D005324 3.3e-06 57.0 85 42.4
Gorai.002G131700 Gossypium raimondii HOM05D004504 ORTHO05D005324 4.3e-06 56.6 343 24.2
Haze_17534 Corylus avellana HOM05D004504 ORTHO05D005324 5.6e-06 56.2 86 40.7
Haze_17537 Corylus avellana HOM05D004504 ORTHO05D005324 5.6e-06 56.2 86 40.7
Gohir.D01G107300 Gossypium hirsutum HOM05D004504 ORTHO05D005324 7.4e-06 55.8 343 24.2
ATR0100G018 Amborella trichopoda HOM05D004504 ORTHO05D005324 9.6e-06 55.5 158 30.4
ClCG08G015770 Citrullus lanatus HOM05D004504 ORTHO05D005324 9.6e-06 55.5 352 24.4
Potri.014G031100 Populus trichocarpa HOM05D004504 ORTHO05D005324 9.6e-06 55.5 368 25.5
Sed0027328 Sechium edule HOM05D004504 ORTHO05D005324 9.6e-06 55.5 91 40.7


User provided reference genes

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