Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g02208 Nelumbo nucifera HOM05D006048 ORTHO05D007642 0.0e+00 1662.5 925 100.0
Nn4g26237 Nelumbo nucifera HOM05D006048 ORTHO05D007642 2.9e-246 855.9 917 55.0
TAR636G0181 Trochodendron aralioides HOM05D006048 ORTHO05D007642 5.5e-197 692.2 1032 44.0
Aqoxy2G03311 Aquilegia oxysepala HOM05D006048 ORTHO05D007642 3.4e-130 470.3 989 35.7
GSVIVG01000040001 Vitis vinifera HOM05D006048 ORTHO05D007642 3.1e-115 420.6 1175 31.3
Cfa006579 Carpinus fangiana HOM05D006048 ORTHO05D007642 4.4e-114 416.8 1097 31.9
Haze_04204 Corylus avellana HOM05D006048 ORTHO05D007642 4.9e-113 413.3 1098 31.6
QL03p006882 Quercus lobata HOM05D006048 ORTHO05D007642 3.4e-106 390.6 1029 31.0
Thecc.05G304700 Theobroma cacao HOM05D006048 ORTHO05D007642 2.9e-105 387.5 1063 31.3
Actinidia05707 Actinidia chinensis HOM05D006048 ORTHO05D007642 3.9e-102 377.1 1064 31.2
Actinidia23630 Actinidia chinensis HOM05D006048 ORTHO05D007642 6.2e-100 369.8 1066 31.0
COL.COLO4_13482 Corchorus olitorius HOM05D006048 ORTHO05D007642 1.8e-99 368.2 957 32.4
Duzib128G0698 Durio zibethinus HOM05D006048 ORTHO05D007642 2.6e-98 364.4 1071 30.2
MBI19_g16658_MAGBIO Magnolia biondii HOM05D006048 ORTHO05D007642 3.4e-98 364.0 904 32.4
Hma1.2p1_0928F.1_g237870 Hydrangea macrophylla HOM05D006048 ORTHO05D007642 2.9e-97 360.9 1024 31.9
CSS0040601 Camellia sinensis var. sinensis HOM05D006048 ORTHO05D007642 9.3e-96 355.9 493 43.4
FvH4_6g05680 Fragaria vesca HOM05D006048 ORTHO05D007642 6.0e-95 353.2 1006 31.3
Ciclev10000202m.g Citrus clementina HOM05D006048 ORTHO05D007642 1.5e-93 348.6 999 30.6
FAN02G2040 Fragaria x ananassa HOM05D006048 ORTHO05D007642 3.3e-93 347.4 1020 30.9
FAN14G2795 Fragaria x ananassa HOM05D006048 ORTHO05D007642 9.6e-93 345.9 1029 31.4
Rhsim07G0182400 Rhododendron simsii HOM05D006048 ORTHO05D007642 3.7e-92 344.0 830 34.8
Glyma.20G233200 Glycine max HOM05D006048 ORTHO05D007642 1.5e-90 338.6 987 30.8
FAN14G2991 Fragaria x ananassa HOM05D006048 ORTHO05D007642 3.4e-90 337.4 1028 30.8
Lj5g0003009 Lotus japonicus HOM05D006048 ORTHO05D007642 4.5e-90 337.0 990 30.3
Sabra13G0025400 Salix brachista HOM05D006048 ORTHO05D007642 4.5e-90 337.0 675 36.6
MD12G1220300 Malus domestica HOM05D006048 ORTHO05D007642 5.8e-90 336.7 1067 30.3
FAN05G1530 Fragaria x ananassa HOM05D006048 ORTHO05D007642 4.9e-89 333.6 1045 30.1
Lalb_Chr21g0310721 Lupinus albus HOM05D006048 ORTHO05D007642 8.4e-89 332.8 967 30.5
CsaV3_2G005180 Cucumis sativus L. HOM05D006048 ORTHO05D007642 1.1e-88 332.4 1036 29.7
Manes.09G166100 Manihot esculenta HOM05D006048 ORTHO05D007642 2.4e-88 331.3 1138 28.7
FAN09G2502 Fragaria x ananassa HOM05D006048 ORTHO05D007642 3.2e-88 330.9 1048 30.2
Potri.013G023600 Populus trichocarpa HOM05D006048 ORTHO05D007642 3.2e-88 330.9 735 34.4
Ca_10107_v3 Cicer arietinum L. HOM05D006048 ORTHO05D007642 4.2e-88 330.5 982 30.3
Medtr1g082840 Medicago truncatula HOM05D006048 ORTHO05D007642 7.1e-88 329.7 985 31.8
Dinv23949 Davidia involucrata HOM05D006048 ORTHO05D007642 9.3e-88 329.3 952 31.5
Prupe.6G327100 Prunus persica HOM05D006048 ORTHO05D007642 9.3e-88 329.3 1094 29.3
RcHm_v2.0_Chr3g0454571 Rosa chinensis HOM05D006048 ORTHO05D007642 9.3e-88 329.3 799 33.4
TWI56G0330 Tripterygium wilfordii HOM05D006048 ORTHO05D007642 2.7e-87 327.8 730 33.4
Gorai.007G296200 Gossypium raimondii HOM05D006048 ORTHO05D007642 1.0e-86 325.9 1021 30.2
Sabra05G0036000 Salix brachista HOM05D006048 ORTHO05D007642 6.7e-86 323.2 767 33.1
Sc06g0003370 Simmondsia chinensis HOM05D006048 ORTHO05D007642 1.5e-85 322.0 992 30.6
Gohir.A11G264200 Gossypium hirsutum HOM05D006048 ORTHO05D007642 1.9e-85 321.6 1024 29.8
Gohir.D11G274400 Gossypium hirsutum HOM05D006048 ORTHO05D007642 5.6e-85 320.1 1019 29.9
ClCG02G015880 Citrullus lanatus HOM05D006048 ORTHO05D007642 7.4e-85 319.7 1017 29.8
MELO3C004275.2 Cucumis melo HOM05D006048 ORTHO05D007642 7.4e-85 319.7 1033 29.3
MD04G1206500 Malus domestica HOM05D006048 ORTHO05D007642 9.6e-85 319.3 1061 29.3
Lalb_Chr06g0167761 Lupinus albus HOM05D006048 ORTHO05D007642 1.3e-84 318.9 981 29.9
Cpa.g.sc48.39 Carica papaya HOM05D006048 ORTHO05D007642 2.1e-84 318.2 1093 28.5
Oeu017488.1 Olea europaea HOM05D006048 ORTHO05D007642 2.1e-84 318.2 760 33.8
TWI12G1173 Tripterygium wilfordii HOM05D006048 ORTHO05D007642 1.4e-83 315.5 824 30.7
Potri.005G034100 Populus trichocarpa HOM05D006048 ORTHO05D007642 2.0e-82 311.6 1071 29.6
Glyma.10G155100 Glycine max HOM05D006048 ORTHO05D007642 4.5e-82 310.5 990 29.3
Nitab4.5_0008677g0020 Nicotiana tabacum HOM05D006048 ORTHO05D007642 1.0e-81 309.3 486 38.7
ECA238G0871 Erigeron canadensis HOM05D006048 ORTHO05D007642 2.5e-80 304.7 881 31.2
FAN05G2734 Fragaria x ananassa HOM05D006048 ORTHO05D007642 4.2e-80 303.9 991 30.0
PSO302G0271 Papaver somniferum HOM05D006048 ORTHO05D007642 1.6e-79 302.0 1203 30.0
Phvul.007G180600 Phaseolus vulgaris HOM05D006048 ORTHO05D007642 3.5e-79 300.8 1011 28.6
CAN.G1077.18 Capsicum annuum HOM05D006048 ORTHO05D007642 3.9e-78 297.4 747 32.1
PSO170G0056 Papaver somniferum HOM05D006048 ORTHO05D007642 8.7e-78 296.2 1205 29.7
Migut.B01039 Erythranthe guttata HOM05D006048 ORTHO05D007642 7.4e-77 293.1 482 38.2
Solyc01g098870.3 Solanum lycopersicum HOM05D006048 ORTHO05D007642 2.2e-76 291.6 486 37.2
Peaxi162Scf00037g00236 Petunia axillaris HOM05D006048 ORTHO05D007642 4.8e-76 290.4 483 37.3
Sopen01g042410 Solanum pennellii HOM05D006048 ORTHO05D007642 8.2e-76 289.7 486 37.2
Nitab4.5_0005388g0020 Nicotiana tabacum HOM05D006048 ORTHO05D007642 1.8e-75 288.5 1039 26.9
VMungo0720G0675 Vigna mungo HOM05D006048 ORTHO05D007642 6.9e-75 286.6 1001 28.8
Cc02_g33600 Coffea canephora HOM05D006048 ORTHO05D007642 5.9e-74 283.5 762 30.1
TPR.G6104 Trifolium pratense HOM05D006048 ORTHO05D007642 7.6e-74 283.1 974 28.7
Ah.06g189270 Amaranthus hybridus HOM05D006048 ORTHO05D007642 2.9e-73 281.2 928 29.3
EL10Ac4g09343 Beta vulgaris HOM05D006048 ORTHO05D007642 1.4e-72 278.9 484 37.0
PGSC0003DMG401028588 Solanum tuberosum HOM05D006048 ORTHO05D007642 2.5e-72 278.1 768 30.5
Hund07062 Selenicereus undatus HOM05D006048 ORTHO05D007642 3.2e-72 277.7 948 28.5
PGR031G0290 Punica granatum HOM05D006048 ORTHO05D007642 7.9e-71 273.1 1049 27.4
AUR62005136 Chenopodium quinoa HOM05D006048 ORTHO05D007642 2.3e-70 271.6 490 35.5
Sed0020620 Sechium edule HOM05D006048 ORTHO05D007642 8.8e-70 269.6 919 29.1
MSTRG.20430 Avicennia marina HOM05D006048 ORTHO05D007642 8.2e-68 263.1 483 37.1
HanXRQChr15g0463081 Helianthus annuus HOM05D006048 ORTHO05D007642 8.2e-68 263.1 967 28.6
SGA_v2.0_scaffold172G38965 Striga asiatica HOM05D006048 ORTHO05D007642 1.4e-67 262.3 439 37.4
Psat6g149640 Pisum sativum HOM05D006048 ORTHO05D007642 4.1e-67 260.8 951 28.5
SalBow8G1366 Salvia bowleyana HOM05D006048 ORTHO05D007642 6.9e-67 260.0 962 30.0
AUR62000837 Chenopodium quinoa HOM05D006048 ORTHO05D007642 3.4e-66 257.7 716 30.4
THA.LOC104820894 Tarenaya hassleriana HOM05D006048 ORTHO05D007642 3.4e-66 257.7 777 30.4
THA.LOC104805873 Tarenaya hassleriana HOM05D006048 ORTHO05D007642 1.6e-63 248.8 991 28.5
Eucgr.H04481 Eucalyptus grandis HOM05D006048 ORTHO05D007642 3.0e-62 244.6 910 32.1
BcaC04g22032 Brassica carinata HOM05D006048 ORTHO05D007642 1.3e-60 239.2 919 29.2
Lsat_1_v5_gn_2_64861 Lactuca sativa HOM05D006048 ORTHO05D007642 1.1e-59 236.1 737 30.9
C09p24290 Brassica napus HOM05D006048 ORTHO05D007642 4.5e-58 230.7 890 28.3
CDE05G2441 Ceratophyllum demersum HOM05D006048 ORTHO05D007642 7.7e-58 229.9 358 38.5
CARHR284550 Cardamine hirsuta HOM05D006048 ORTHO05D007642 1.9e-56 225.3 1024 25.6
ATR0626G180 Amborella trichopoda HOM05D006048 ORTHO05D007642 3.2e-56 224.6 353 39.4
A09p19290 Brassica napus HOM05D006048 ORTHO05D007642 4.2e-56 224.2 928 28.1
BolC9t55346H Brassica oleracea HOM05D006048 ORTHO05D007642 1.2e-55 222.6 933 28.1
AL1G65400 Arabidopsis lyrata HOM05D006048 ORTHO05D007642 2.7e-55 221.5 944 29.0
BcaB07g31106 Brassica carinata HOM05D006048 ORTHO05D007642 2.7e-55 221.5 961 27.2
vmacro05021 Vaccinium macrocarpon HOM05D006048 ORTHO05D007642 1.4e-54 219.2 984 27.6
Aa31LG2G11800 Aethionema arabicum HOM05D006048 ORTHO05D007642 1.3e-52 212.6 993 25.3
Carub.0002s0845 Capsella rubella HOM05D006048 ORTHO05D007642 3.1e-51 208.0 971 26.6
AT1G54920 Arabidopsis thaliana HOM05D006048 ORTHO05D007642 1.2e-50 206.1 996 28.8
BraA09t37546Z Brassica rapa HOM05D006048 ORTHO05D007642 1.2e-50 206.1 938 26.9
Atru.chr2.428 Acer truncatum HOM05D006048 ORTHO05D007642 1.2e-45 189.5 184 50.0
Os11g0148400 Oryza sativa ssp. japonica HOM05D006048 ORTHO05D007642 3.1e-43 181.4 356 32.0
Nn1g04267 Nelumbo nucifera HOM05D006048 ORTHO05D007642 3.8e-41 174.5 119 95.8
Psat7g077840 Pisum sativum HOM05D006048 ORTHO05D007642 8.0e-39 166.8 177 48.6
SEGI_14627 Sequoiadendron giganteum HOM05D006048 ORTHO05D007642 1.8e-35 155.6 492 27.2
CDE05G0200 Ceratophyllum demersum HOM05D006048 ORTHO05D007642 1.2e-34 152.9 229 38.0
CiPaw.07G016800 Carya illinoinensis HOM05D006048 ORTHO05D007642 4.2e-32 144.4 858 25.6
HPP92_011303 Vanilla planifolia HOM05D006048 ORTHO05D007642 2.6e-29 135.2 224 36.2
HPP92_011281 Vanilla planifolia HOM05D006048 ORTHO05D007642 3.4e-29 134.8 223 35.9
MBI19_g40207_MAGBIO Magnolia biondii HOM05D006048 ORTHO05D007642 5.9e-26 124.0 254 33.9
Manes.08G121600 Manihot esculenta HOM05D006048 ORTHO05D007642 5.6e-24 117.5 707 25.6
Atru.chr2.429 Acer truncatum HOM05D006048 ORTHO05D007642 2.8e-23 115.2 257 32.3
Mapoly0011s0030 Marchantia polymorpha HOM05D006048 ORTHO05D007642 6.8e-22 110.5 228 30.7
Lj9A29T9 Lonicera japonica HOM05D006048 ORTHO05D007642 7.5e-21 107.1 390 29.7
AagrBONN_evm.TU.Sc2ySwM_344.3982 Anthoceros agrestis HOM05D006048 ORTHO05D007642 1.3e-20 106.3 232 30.2
Lj9A18T10 Lonicera japonica HOM05D006048 ORTHO05D007642 2.9e-20 105.1 390 29.5
CDE05G3494 Ceratophyllum demersum HOM05D006048 ORTHO05D007642 2.3e-17 95.5 286 28.0
Nn8g39471 Nelumbo nucifera HOM05D006048 ORTHO05D007642 2.1e-15 89.0 45 91.1
CiPaw.08G165500 Carya illinoinensis HOM05D006048 ORTHO05D007642 1.8e-14 85.9 77 50.6
MBI12_g31451_MAGBIO Magnolia biondii HOM05D006048 ORTHO05D007642 3.9e-09 68.2 124 37.9
SMO203G0156 Selaginella moellendorffii HOM05D006048 ORTHO05D007642 1.1e-08 66.6 192 28.1
Actinidia01443 Actinidia chinensis HOM05D006048 ORTHO05D007642 3.6e-07 61.6 114 37.7
Atru.chr2.431 Acer truncatum HOM05D006048 ORTHO05D007642 1.4e-06 59.7 205 29.3
CiPaw.08G165600 Carya illinoinensis HOM05D006048 ORTHO05D007642 2.3e-06 58.9 280 27.5


User provided reference genes

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