Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g02166 Nelumbo nucifera HOM05D007231 ORTHO05D009024 5.6e-141 504.2 247 100.0
TAR636G3122 Trochodendron aralioides HOM05D007231 ORTHO05D009024 2.0e-106 389.4 250 78.4
TAR365G1202 Trochodendron aralioides HOM05D007231 ORTHO05D009024 1.3e-105 386.7 250 78.0
Actinidia00741 Actinidia chinensis HOM05D007231 ORTHO05D009024 8.5e-105 384.0 250 76.8
Actinidia09146 Actinidia chinensis HOM05D007231 ORTHO05D009024 1.1e-104 383.6 250 77.2
GSVIVG01011110001 Vitis vinifera HOM05D007231 ORTHO05D009024 5.5e-104 381.3 248 76.6
Thecc.01G282400 Theobroma cacao HOM05D007231 ORTHO05D009024 1.6e-103 379.8 250 75.6
Duzib211G0396 Durio zibethinus HOM05D007231 ORTHO05D009024 2.1e-103 379.4 250 75.2
Atru.chr5.1389 Acer truncatum HOM05D007231 ORTHO05D009024 4.4e-101 371.7 250 74.8
CiPaw.08G104200 Carya illinoinensis HOM05D007231 ORTHO05D009024 5.7e-101 371.3 250 74.8
Dinv11248 Davidia involucrata HOM05D007231 ORTHO05D009024 5.7e-101 371.3 250 76.0
Cc01_g19680 Coffea canephora HOM05D007231 ORTHO05D009024 1.3e-100 370.2 250 73.2
COL.COLO4_09128 Corchorus olitorius HOM05D007231 ORTHO05D009024 3.7e-100 368.6 250 74.4
Dinv32951 Davidia involucrata HOM05D007231 ORTHO05D009024 6.3e-100 367.9 253 74.3
Rhsim13G0023500 Rhododendron simsii HOM05D007231 ORTHO05D009024 8.2e-100 367.5 250 73.6
MBI19_g24716_MAGBIO Magnolia biondii HOM05D007231 ORTHO05D009024 1.8e-99 366.3 247 74.5
Gohir.D08G077400 Gossypium hirsutum HOM05D007231 ORTHO05D009024 2.6e-98 362.5 250 73.2
Gorai.004G082300 Gossypium raimondii HOM05D007231 ORTHO05D009024 5.9e-98 361.3 250 73.2
Ciclev10021857m.g Citrus clementina HOM05D007231 ORTHO05D009024 7.7e-98 360.9 251 70.9
Cfa006118 Carpinus fangiana HOM05D007231 ORTHO05D009024 2.2e-97 359.4 255 71.0
QL12p022281 Quercus lobata HOM05D007231 ORTHO05D009024 3.8e-97 358.6 247 73.3
vmacro02556 Vaccinium macrocarpon HOM05D007231 ORTHO05D009024 8.5e-97 357.5 250 72.4
PSO210G0158 Papaver somniferum HOM05D007231 ORTHO05D009024 1.1e-96 357.1 252 72.6
Gohir.A08G069100 Gossypium hirsutum HOM05D007231 ORTHO05D009024 1.5e-96 356.7 250 72.0
CAN.G609.11 Capsicum annuum HOM05D007231 ORTHO05D009024 3.2e-96 355.5 250 70.4
Manes.05G074400 Manihot esculenta HOM05D007231 ORTHO05D009024 3.2e-96 355.5 250 70.4
Aqoxy2G03271 Aquilegia oxysepala HOM05D007231 ORTHO05D009024 3.6e-95 352.1 245 71.8
Peaxi162Scf00570g00058 Petunia axillaris HOM05D007231 ORTHO05D009024 4.7e-95 351.7 250 69.2
Prupe.8G243400 Prunus persica HOM05D007231 ORTHO05D009024 6.1e-95 351.3 250 70.0
Cpa.g.sc64.168 Carica papaya HOM05D007231 ORTHO05D009024 1.8e-94 349.7 247 68.4
MSTRG.18222 Avicennia marina HOM05D007231 ORTHO05D009024 3.0e-94 349.0 250 68.8
CANSAT25G1925 Cannabis sativa HOM05D007231 ORTHO05D009024 8.8e-94 347.4 250 70.0
Nitab4.5_0001028g0140 Nicotiana tabacum HOM05D007231 ORTHO05D009024 8.8e-94 347.4 251 69.7
Lj2C1175G18 Lonicera japonica HOM05D007231 ORTHO05D009024 4.4e-93 345.1 314 60.2
Sopen09g026640 Solanum pennellii HOM05D007231 ORTHO05D009024 9.8e-93 344.0 250 69.6
Sabra19G0055900 Salix brachista HOM05D007231 ORTHO05D009024 1.3e-92 343.6 248 70.6
Solyc09g064930.3 Solanum lycopersicum HOM05D007231 ORTHO05D009024 1.7e-92 343.2 250 69.2
FvH4_2g23810 Fragaria vesca HOM05D007231 ORTHO05D009024 6.3e-92 341.3 253 70.0
Nitab4.5_0002386g0100 Nicotiana tabacum HOM05D002055 ORTHO05D009024 1.8e-91 339.7 248 69.0
RcHm_v2.0_Chr6g0291381 Rosa chinensis HOM05D007231 ORTHO05D009024 9.1e-91 337.4 252 68.3
Potri.019G046400 Populus trichocarpa HOM05D007231 ORTHO05D009024 1.2e-90 337.0 248 69.8
SalBow4G2275 Salvia bowleyana HOM05D007231 ORTHO05D009024 3.5e-90 335.5 249 66.3
MD11G1288600 Malus domestica HOM05D007231 ORTHO05D009024 4.5e-90 335.1 252 66.7
FAN27G1680 Fragaria x ananassa HOM05D007231 ORTHO05D009024 5.9e-90 334.7 260 68.1
Lj5g0005680 Lotus japonicus HOM05D007231 ORTHO05D009024 2.2e-89 332.8 245 69.4
Migut.D00275 Erythranthe guttata HOM05D007231 ORTHO05D009024 1.1e-88 330.5 251 65.3
Glyma.10G025400 Glycine max HOM05D007231 ORTHO05D009024 4.2e-88 328.6 244 67.6
Oeu015959.1 Olea europaea HOM05D007231 ORTHO05D009024 4.2e-88 328.6 221 72.4
Phvul.007G170300 Phaseolus vulgaris HOM05D007231 ORTHO05D009024 4.2e-88 328.6 244 68.9
THA.LOC104801225 Tarenaya hassleriana HOM05D007231 ORTHO05D009024 7.2e-88 327.8 250 65.6
Eucgr.K03384 Eucalyptus grandis HOM05D007231 ORTHO05D009024 1.2e-87 327.0 249 66.3
Oeu022878.1 Olea europaea HOM05D007231 ORTHO05D009024 4.7e-87 325.1 216 71.8
Lalb_Chr02g0142831 Lupinus albus HOM05D007231 ORTHO05D009024 1.8e-86 323.2 244 68.0
Hund05352 Selenicereus undatus HOM05D007231 ORTHO05D009024 3.0e-86 322.4 249 65.9
arahy.Tifrunner.gnm1.ann1.9UA39Y Arachis hypogaea HOM05D007231 ORTHO05D009024 5.2e-86 321.6 251 68.1
arahy.Tifrunner.gnm1.ann1.LJDI86 Arachis hypogaea HOM05D007231 ORTHO05D009024 5.2e-86 321.6 251 68.1
Lalb_Chr06g0163091 Lupinus albus HOM05D007231 ORTHO05D009024 5.2e-86 321.6 244 68.0
HanXRQChr01g0002311 Helianthus annuus HOM05D007231 ORTHO05D009024 6.8e-86 321.2 247 62.8
CsaV3_7G028660 Cucumis sativus L. HOM05D007231 ORTHO05D009024 1.2e-85 320.5 249 63.5
Aa31LG1G9290 Aethionema arabicum HOM05D007231 ORTHO05D009024 7.5e-85 317.8 250 64.8
AUR62036799 Chenopodium quinoa HOM05D007231 ORTHO05D009024 7.5e-85 317.8 277 58.8
Lsat_1_v5_gn_5_190100 Lactuca sativa HOM05D007231 ORTHO05D009024 7.5e-85 317.8 249 63.9
MELO3C015851.2 Cucumis melo HOM05D007231 ORTHO05D009024 1.3e-84 317.0 249 63.5
HanXRQChr11g0327631 Helianthus annuus HOM05D007231 ORTHO05D009024 1.3e-84 317.0 247 63.6
EL10Ac7g17220 Beta vulgaris HOM05D007231 ORTHO05D009024 2.8e-84 315.8 301 56.1
AL1G12740 Arabidopsis lyrata HOM05D007231 ORTHO05D009024 3.7e-84 315.5 249 65.1
AT1G03250 Arabidopsis thaliana HOM05D007231 ORTHO05D009024 1.1e-83 313.9 249 64.3
Psat6g125920 Pisum sativum HOM05D007231 ORTHO05D009024 5.4e-83 311.6 246 65.4
Ca_09766_v3 Cicer arietinum L. HOM05D002055 ORTHO05D002120 9.1e-83 310.8 243 66.7
Thhalv10008549m.g Eutrema salsugineum HOM05D007231 ORTHO05D009024 9.1e-83 310.8 255 63.1
FAN20G2044 Fragaria x ananassa HOM05D007231 ORTHO05D009024 9.1e-83 310.8 301 57.5
CARHR002550 Cardamine hirsuta HOM05D007231 ORTHO05D009024 3.5e-82 308.9 250 62.8
VMungo0720G1677 Vigna mungo HOM05D002055 ORTHO05D002120 3.5e-82 308.9 220 70.0
A10p01800 Brassica napus HOM05D007231 ORTHO05D009024 4.5e-82 308.5 250 63.2
BcaC05g24637 Brassica carinata HOM05D007231 ORTHO05D009024 1.0e-81 307.4 250 63.2
ECA248G0248 Erigeron canadensis HOM05D002055 ORTHO05D002120 2.3e-81 306.2 244 62.7
CDE04G0796 Ceratophyllum demersum HOM05D007231 ORTHO05D009024 5.0e-81 305.1 240 64.2
SGA_v2.0_scaffold1G00456 Striga asiatica HOM05D007231 ORTHO05D009024 5.0e-81 305.1 249 59.8
BraA10t42455Z Brassica rapa HOM05D007231 ORTHO05D009024 1.5e-80 303.5 250 62.4
Sp1g02240 Schrenkiella parvula HOM05D007231 ORTHO05D009024 1.5e-80 303.5 250 62.0
Carub.0001s0236 Capsella rubella HOM05D007231 ORTHO05D009024 3.3e-80 302.4 249 62.2
BcaC05g24551 Brassica carinata HOM05D007231 ORTHO05D009024 9.5e-80 300.8 250 62.0
C05p01780 Brassica napus HOM05D007231 ORTHO05D009024 1.6e-79 300.1 261 59.4
Medtr1g072510 Medicago truncatula HOM05D007231 ORTHO05D009024 3.6e-79 298.9 223 66.8
BolC5t28956H Brassica oleracea HOM05D007231 ORTHO05D009024 6.1e-79 298.1 257 60.7
CSS0040014 Camellia sinensis var. sinensis HOM05D007231 ORTHO05D009024 6.1e-79 298.1 189 75.7
SGA_v2.0_scaffold11G05804 Striga asiatica HOM05D002055 ORTHO05D002120 8.9e-78 294.3 257 57.2
Sed0024964 Sechium edule HOM05D002055 ORTHO05D002120 1.2e-77 293.9 233 62.7
Duzib138G1636 Durio zibethinus HOM05D007231 ORTHO05D009024 2.6e-77 292.7 250 63.6
Os11g0147100 Oryza sativa ssp. japonica HOM05D007231 ORTHO05D009024 3.4e-77 292.4 244 57.4
TWI14G0923 Tripterygium wilfordii HOM05D002055 ORTHO05D002120 5.7e-77 291.6 200 75.0
Ciclev10022442m.g Citrus clementina HOM05D007231 ORTHO05D009024 3.7e-76 288.9 187 72.7
Os12g0144000 Oryza sativa ssp. japonica HOM05D007231 ORTHO05D009024 2.4e-75 286.2 242 56.6
PGR044G2216 Punica granatum HOM05D007231 ORTHO05D009024 7.0e-75 284.6 187 73.3
Zm00001eb342980 Zea mays HOM05D007231 ORTHO05D009024 1.3e-73 280.4 243 55.1
unitig_0.g109 Utricularia gibba HOM05D007231 ORTHO05D009024 5.0e-73 278.5 212 61.3
Zm00001eb196600 Zea mays HOM05D007231 ORTHO05D009024 4.3e-72 275.4 246 56.9
ATR0626G005 Amborella trichopoda HOM05D007231 ORTHO05D009024 1.2e-71 273.9 206 63.1
ClCG09G006940 Citrullus lanatus HOM05D002055 ORTHO05D002120 1.7e-68 263.5 198 64.6
HPP92_016066 Vanilla planifolia HOM05D006695 ORTHO05D008239 1.1e-67 260.8 208 63.0
AUR62039907 Chenopodium quinoa HOM05D007231 ORTHO05D009024 5.1e-57 225.3 152 68.4
Sc05g0004910 Simmondsia chinensis HOM05D007231 ORTHO05D009024 1.6e-55 220.3 165 67.3
SEGI_15193 Sequoiadendron giganteum HOM05D007231 ORTHO05D009024 1.9e-43 180.3 218 44.0
TPR.G19967 Trifolium pratense HOM05D007231 ORTHO05D009024 1.4e-38 164.1 120 66.7
Mapoly0057s0044 Marchantia polymorpha HOM05D007231 ORTHO05D009024 2.7e-34 149.8 217 40.6
SMO137G0298 Selaginella moellendorffii HOM05D007231 ORTHO05D009024 1.9e-27 127.1 189 40.7
SMO170G0043 Selaginella moellendorffii HOM05D007231 ORTHO05D009024 4.2e-27 125.9 189 40.2
Pp3c4_28170 Physcomitrium patens HOM05D007231 ORTHO05D009024 1.8e-25 120.6 214 35.5
MCO13G326 Micromonas commoda HOM05D007231 ORTHO05D009024 3.7e-23 112.8 195 34.9
Cc01_g19320 Coffea canephora HOM05D007231 ORTHO05D009024 5.3e-22 109.0 136 49.3
Cre01.g040100 Chlamydomonas reinhardtii HOM05D007231 ORTHO05D009024 2.0e-21 107.1 207 33.3
AagrBONN_evm.TU.Sc2ySwM_117.667 Anthoceros agrestis HOM05D007231 ORTHO05D009024 2.6e-21 106.7 164 34.8
CDE02G1070 Ceratophyllum demersum HOM05D007231 ORTHO05D009024 1.1e-16 91.3 119 44.5
BcaC05g24635 Brassica carinata HOM05D007231 ORTHO05D009024 1.5e-16 90.9 84 54.8
TPR.G24733 Trifolium pratense HOM05D007231 ORTHO05D009024 1.0e-12 78.2 68 67.6
CDE02G2493 Ceratophyllum demersum HOM05D007231 ORTHO05D009024 3.8e-12 76.3 67 55.2


User provided reference genes

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