Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g02127 Nelumbo nucifera HOM05D006658 ORTHO05D008515 1.3e-114 416.4 211 100.0
Aqoxy2G03225 Aquilegia oxysepala HOM05D006658 ORTHO05D008515 9.9e-70 267.3 200 72.5
Nn4g26153 Nelumbo nucifera HOM05D006658 ORTHO05D008515 9.9e-70 267.3 204 72.5
TAR365G0289 Trochodendron aralioides HOM05D006658 ORTHO05D008515 1.7e-69 266.5 200 72.5
Haze_00994 Corylus avellana HOM05D006658 ORTHO05D008515 3.2e-68 262.3 200 71.0
Cfa015553 Carpinus fangiana HOM05D006658 ORTHO05D008515 4.2e-68 261.9 200 71.0
PSO170G4721 Papaver somniferum HOM05D006658 ORTHO05D008515 5.4e-68 261.5 200 71.5
PSO407G0441 Papaver somniferum HOM05D006658 ORTHO05D008515 3.5e-67 258.8 200 71.5
Atru.chr4.2671 Acer truncatum HOM05D006658 ORTHO05D008515 4.6e-67 258.5 200 69.0
MBI17_g29609_MAGBIO Magnolia biondii HOM05D006658 ORTHO05D008515 4.6e-67 258.5 200 70.0
Sabra08G0161000 Salix brachista HOM05D006658 ORTHO05D008515 7.9e-67 257.7 200 69.5
CiPaw.02G090200 Carya illinoinensis HOM05D006658 ORTHO05D008515 8.7e-66 254.2 200 68.0
Potri.008G199900 Populus trichocarpa HOM05D006658 ORTHO05D008515 2.5e-65 252.7 200 67.5
Rhsim02G0017700 Rhododendron simsii HOM05D006658 ORTHO05D008515 3.3e-65 252.3 200 69.5
Ciclev10005116m.g Citrus clementina HOM05D006658 ORTHO05D008515 4.3e-65 251.9 200 67.5
Prupe.1G148500 Prunus persica HOM05D006658 ORTHO05D008515 7.3e-65 251.1 200 67.0
VMungo0540G0090 Vigna mungo HOM05D006658 ORTHO05D008515 9.6e-65 250.8 200 68.5
MD13G1180000 Malus domestica HOM05D006658 ORTHO05D008515 1.3e-64 250.4 200 67.5
vmacro15292 Vaccinium macrocarpon HOM05D006658 ORTHO05D008515 1.3e-64 250.4 200 68.0
GSVIVG01017866001 Vitis vinifera HOM05D006658 ORTHO05D008515 1.3e-64 250.4 209 67.5
QL06p005937 Quercus lobata HOM05D006658 ORTHO05D008515 1.6e-64 250.0 200 67.0
Manes.15G021400 Manihot esculenta HOM05D006658 ORTHO05D008515 2.1e-64 249.6 200 67.0
Phvul.006G155900 Phaseolus vulgaris HOM05D006658 ORTHO05D008515 8.1e-64 247.7 200 67.5
Glyma.15G101900 Glycine max HOM05D006658 ORTHO05D008515 2.4e-63 246.1 200 67.0
Eucgr.E03351 Eucalyptus grandis HOM05D006658 ORTHO05D008515 5.3e-63 245.0 200 65.5
Lalb_Chr15g0087271 Lupinus albus HOM05D006658 ORTHO05D008515 9.0e-63 244.2 200 65.5
TWI53G0915 Tripterygium wilfordii HOM05D006658 ORTHO05D008515 4.5e-62 241.9 200 66.5
RcHm_v2.0_Chr4g0419051 Rosa chinensis HOM05D006658 ORTHO05D008515 5.8e-62 241.5 199 65.3
CANSAT78G1897 Cannabis sativa HOM05D006658 ORTHO05D008515 7.6e-62 241.1 200 65.0
Medtr2g021220 Medicago truncatula HOM05D006658 ORTHO05D008515 7.6e-62 241.1 199 65.8
Lj6g0017983 Lotus japonicus HOM05D006658 ORTHO05D008515 9.9e-62 240.7 200 65.0
Lsat_1_v5_gn_5_165480 Lactuca sativa HOM05D006658 ORTHO05D008515 1.3e-61 240.4 196 67.9
arahy.Tifrunner.gnm1.ann1.V9Y9T8 Arachis hypogaea HOM05D006658 ORTHO05D008515 2.2e-61 239.6 200 64.5
Actinidia00076 Actinidia chinensis HOM05D006658 ORTHO05D008515 3.8e-61 238.8 200 65.5
FAN22G2256 Fragaria x ananassa HOM05D006658 ORTHO05D008515 6.4e-61 238.0 199 63.8
Os05g0400600 Oryza sativa ssp. japonica HOM05D006658 ORTHO05D008515 6.4e-61 238.0 199 65.3
FvH4_4g14170 Fragaria vesca HOM05D006658 ORTHO05D008515 8.4e-61 237.7 199 63.8
FAN12G0854 Fragaria x ananassa HOM05D006658 ORTHO05D008515 8.4e-61 237.7 199 63.8
HPP92_001401 Vanilla planifolia HOM05D006658 ORTHO05D008515 1.1e-60 237.3 199 64.8
ATR0626G018 Amborella trichopoda HOM05D006658 ORTHO05D007095 1.4e-60 236.9 200 64.0
arahy.Tifrunner.gnm1.ann1.Q3CYV3 Arachis hypogaea HOM05D006658 ORTHO05D008515 1.4e-60 236.9 199 64.3
Cpa.g.sc16.52 Carica papaya HOM05D006658 ORTHO05D008515 1.4e-60 236.9 200 64.0
CsaV3_6G005460 Cucumis sativus L. HOM05D006658 ORTHO05D008515 1.4e-60 236.9 200 62.5
Sc13g0003830 Simmondsia chinensis HOM05D006658 ORTHO05D008515 1.4e-60 236.9 200 64.5
CSS0022396 Camellia sinensis var. sinensis HOM05D006658 ORTHO05D008515 1.9e-60 236.5 200 64.0
Dinv38362 Davidia involucrata HOM05D006658 ORTHO05D008515 1.9e-60 236.5 200 64.5
TPR.G28916 Trifolium pratense HOM05D000887 ORTHO05D000908 1.9e-60 236.5 199 65.3
MELO3C021391.2 Cucumis melo HOM05D006658 ORTHO05D008515 2.4e-60 236.1 200 62.5
DCAR_027140 Daucus carota HOM05D006658 ORTHO05D008515 2.4e-60 236.1 196 66.8
Carub.0003s2162 Capsella rubella HOM05D006658 ORTHO05D008515 3.2e-60 235.7 200 62.0
ClCG06G005690 Citrullus lanatus HOM05D006658 ORTHO05D008515 3.2e-60 235.7 200 62.0
BcaB04g19174 Brassica carinata HOM05D006658 ORTHO05D008515 5.4e-60 235.0 200 62.0
Duzib212G0844 Durio zibethinus HOM05D006658 ORTHO05D008515 5.4e-60 235.0 197 62.9
Cc03_g02920 Coffea canephora HOM05D006658 ORTHO05D008515 9.3e-60 234.2 200 64.0
Sp3g19610 Schrenkiella parvula HOM05D006658 ORTHO05D008515 9.3e-60 234.2 200 62.0
AT3G21580 Arabidopsis thaliana HOM05D006658 ORTHO05D008515 1.2e-59 233.8 200 61.5
AL3G35700 Arabidopsis lyrata HOM05D006658 ORTHO05D008515 1.6e-59 233.4 200 61.5
BcaC01g03498 Brassica carinata HOM05D006658 ORTHO05D008515 1.6e-59 233.4 200 61.5
A03p42320 Brassica napus HOM05D006658 ORTHO05D008515 1.6e-59 233.4 200 61.5
BraA03t13384Z Brassica rapa HOM05D006658 ORTHO05D008515 1.6e-59 233.4 200 61.5
Sed0019307 Sechium edule HOM05D006658 ORTHO05D008515 1.6e-59 233.4 200 62.0
ECA234G3592 Erigeron canadensis HOM05D006658 ORTHO05D008515 2.1e-59 233.0 196 65.3
HanXRQChr12g0359491 Helianthus annuus HOM05D006658 ORTHO05D008515 2.1e-59 233.0 196 65.3
Thhalv10020897m.g Eutrema salsugineum HOM05D006658 ORTHO05D008515 2.7e-59 232.6 200 61.5
PGR065G0004 Punica granatum HOM05D006658 ORTHO05D008515 2.7e-59 232.6 200 63.0
Zm00001eb346810 Zea mays HOM05D006658 ORTHO05D008515 2.7e-59 232.6 199 62.8
FAN07G2752 Fragaria x ananassa HOM05D006658 ORTHO05D008515 3.5e-59 232.3 215 58.6
CARHR097540 Cardamine hirsuta HOM05D006658 ORTHO05D008515 4.6e-59 231.9 200 61.0
Ca_00605_v3 Cicer arietinum L. HOM05D000887 ORTHO05D000908 6.0e-59 231.5 199 63.8
Gohir.A09G200700 Gossypium hirsutum HOM05D006658 ORTHO05D008515 1.0e-58 230.7 200 61.5
Gohir.D09G194900 Gossypium hirsutum HOM05D006658 ORTHO05D008515 1.0e-58 230.7 200 61.5
Gorai.006G218300 Gossypium raimondii HOM05D006658 ORTHO05D008515 1.0e-58 230.7 200 61.5
Thecc.04G218900 Theobroma cacao HOM05D006658 ORTHO05D008515 1.0e-58 230.7 200 62.0
Aa31sc174G10 Aethionema arabicum HOM05D006658 ORTHO05D008515 1.8e-58 229.9 200 61.0
THA.LOC104820222 Tarenaya hassleriana HOM05D006658 ORTHO05D008515 5.1e-58 228.4 200 61.0
RcHm_v2.0_Chr5g0064291 Rosa chinensis HOM05D006658 ORTHO05D008515 6.7e-58 228.0 159 72.3
RcHm_v2.0_Chr2g0086241 Rosa chinensis HOM05D006658 ORTHO05D008515 1.1e-57 227.3 181 65.7
PGR004G0022 Punica granatum HOM05D006658 ORTHO05D008515 1.5e-57 226.9 161 70.8
Solyc01g080300.4 Solanum lycopersicum HOM05D006658 ORTHO05D008515 3.3e-57 225.7 200 62.0
Sopen01g032090 Solanum pennellii HOM05D006658 ORTHO05D008515 3.3e-57 225.7 200 62.0
PGSC0003DMG400004353 Solanum tuberosum HOM05D006658 ORTHO05D008515 3.3e-57 225.7 200 62.0
BolC3t17462H Brassica oleracea HOM05D006658 ORTHO05D008515 1.3e-56 223.8 200 59.5
Nitab4.5_0003070g0030 Nicotiana tabacum HOM05D006658 ORTHO05D008515 1.6e-56 223.4 200 62.0
Psat5g176560 Pisum sativum HOM05D006658 ORTHO05D008515 1.6e-56 223.4 214 59.8
CAN.G522.10 Capsicum annuum HOM05D006658 ORTHO05D008515 2.1e-56 223.0 200 62.0
C03p51780 Brassica napus HOM05D006658 ORTHO05D008515 2.8e-56 222.6 200 59.0
CDE09G1086 Ceratophyllum demersum HOM05D002356 ORTHO05D002546 2.8e-56 222.6 162 69.1
CDE02G1914 Ceratophyllum demersum HOM05D006658 ORTHO05D008515 3.7e-56 222.2 200 59.5
SEGI_40702 Sequoiadendron giganteum HOM05D006658 ORTHO05D008515 2.4e-55 219.5 199 58.3
Peaxi162Scf00095g00723 Petunia axillaris HOM05D006658 ORTHO05D008515 5.3e-55 218.4 203 61.6
CSS0004357 Camellia sinensis var. sinensis HOM05D006658 ORTHO05D008515 5.8e-54 214.9 150 72.7
EL10Ac4g08937 Beta vulgaris HOM05D006658 ORTHO05D008515 1.7e-53 213.4 200 58.0
COL.COLO4_21620 Corchorus olitorius HOM05D006658 ORTHO05D008515 2.9e-53 212.6 187 61.5
MSTRG.24762 Avicennia marina HOM05D006658 ORTHO05D008515 3.2e-52 209.1 184 59.8
Psat1g186040 Pisum sativum HOM05D006658 ORTHO05D008515 5.5e-52 208.4 177 63.8
Glyma.13G210900 Glycine max HOM05D006658 ORTHO05D008515 7.1e-52 208.0 142 73.2
AUR62004779 Chenopodium quinoa HOM05D006658 ORTHO05D008515 1.2e-51 207.2 200 57.0
Hund26050 Selenicereus undatus HOM05D006658 ORTHO05D008515 1.2e-51 207.2 159 64.8
SalBow5G3198 Salvia bowleyana HOM05D006658 ORTHO05D008515 2.7e-51 206.1 200 56.5
Migut.N00139 Erythranthe guttata HOM05D006658 ORTHO05D008515 3.5e-51 205.7 200 56.5
SGA_v2.0_scaffold107G30765 Striga asiatica HOM05D006658 ORTHO05D008515 2.3e-50 203.0 200 56.0
Ah.06g191650 Amaranthus hybridus HOM05D006658 ORTHO05D008515 5.1e-50 201.8 189 60.3
Manes.07G121800 Manihot esculenta HOM05D006658 ORTHO05D008515 2.5e-49 199.5 140 74.3
Lj3A803G20 Lonicera japonica HOM05D006658 ORTHO05D008515 2.8e-48 196.1 155 69.0
Mapoly0015s0173 Marchantia polymorpha HOM05D006658 ORTHO05D008515 8.2e-48 194.5 159 61.0
Pp3c16_5660 Physcomitrium patens HOM05D006658 ORTHO05D008515 8.2e-48 194.5 199 50.8
RcHm_v2.0_Chr5g0045591 Rosa chinensis HOM05D006658 ORTHO05D008515 1.8e-47 193.4 134 73.9
AagrBONN_evm.TU.Sc2ySwM_228.2900 Anthoceros agrestis HOM05D006670 ORTHO05D008715 7.9e-43 177.9 199 47.7
SMO361G0230 Selaginella moellendorffii HOM05D006658 ORTHO05D008515 1.8e-42 176.8 159 54.7
unitig_61.g26008 Utricularia gibba HOM05D006658 ORTHO05D008515 4.2e-36 155.6 135 59.3
AUR62003399 Chenopodium quinoa HOM05D006658 ORTHO05D008515 2.8e-32 142.9 200 46.5
Cre12.g533950 Chlamydomonas reinhardtii HOM05D006658 ORTHO05D008515 1.6e-27 127.1 149 45.0
Peaxi162Scf00095g00724 Petunia axillaris HOM05D006658 ORTHO05D008515 1.4e-26 124.0 120 56.7
MCO01G250 Micromonas commoda HOM05D006658 ORTHO05D008515 5.1e-26 122.1 150 37.3
PRCOL_00004089 Prasinoderma coloniale HOM05D006658 ORTHO05D008515 6.7e-26 121.7 154 43.5
SEGI_22040 Sequoiadendron giganteum HOM05D006658 ORTHO05D008515 1.1e-23 114.4 120 53.3
Actinidia32371 Actinidia chinensis HOM05D006658 ORTHO05D008515 3.1e-23 112.8 81 74.1
Actinidia08452 Actinidia chinensis HOM05D006658 ORTHO05D008515 4.5e-22 109.0 81 71.6
HPP92_001340 Vanilla planifolia HOM05D006658 ORTHO05D008515 1.7e-16 90.5 59 74.6
HanXRQChr09g0256171 Helianthus annuus HOM05D006658 ORTHO05D008515 2.4e-15 86.7 62 69.4
Psat2g070960 Pisum sativum HOM05D006658 ORTHO05D008515 4.1e-15 85.9 72 61.1
Nitab4.5_0000059g0030 Nicotiana tabacum HOM05D006658 ORTHO05D008979 3.5e-14 82.8 127 46.5
Oeu023652.1 Olea europaea HOM05D006658 ORTHO05D008515 1.7e-08 63.9 165 32.7
HanXRQChr04g0123631 Helianthus annuus HOM05D034347 ORTHO05D227534 5.9e-06 55.5 46 60.9


User provided reference genes

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