Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g02125 Nelumbo nucifera HOM05D005136 ORTHO05D006619 4.6e-74 281.2 145 100.0
vmacro08119 Vaccinium macrocarpon HOM05D005136 ORTHO05D006619 5.2e-62 241.1 143 86.0
Cfa005022 Carpinus fangiana HOM05D005136 ORTHO05D006619 3.4e-61 238.4 144 83.3
Haze_02365 Corylus avellana HOM05D005136 ORTHO05D006619 3.4e-61 238.4 144 83.3
Dinv23543 Davidia involucrata HOM05D005136 ORTHO05D006619 3.4e-61 238.4 144 83.3
TAR625G1013 Trochodendron aralioides HOM05D005136 ORTHO05D006619 4.4e-61 238.0 144 84.7
Rhsim11G0174400 Rhododendron simsii HOM05D005136 ORTHO05D006619 7.5e-61 237.3 143 84.6
TAR628G0554 Trochodendron aralioides HOM05D005136 ORTHO05D006619 4.9e-60 234.6 144 81.2
TAR628G1226 Trochodendron aralioides HOM05D005136 ORTHO05D006619 4.9e-60 234.6 144 81.2
RcHm_v2.0_Chr6g0263731 Rosa chinensis HOM05D005136 ORTHO05D006619 1.1e-59 233.4 144 80.6
CSS0002049 Camellia sinensis var. sinensis HOM05D005136 ORTHO05D006619 1.9e-59 232.6 144 83.3
CSS0016345 Camellia sinensis var. sinensis HOM05D005136 ORTHO05D006619 1.9e-59 232.6 144 83.3
CSS0049550 Camellia sinensis var. sinensis HOM05D005136 ORTHO05D006619 1.9e-59 232.6 144 83.3
Ciclev10029521m.g Citrus clementina HOM05D005136 ORTHO05D006619 1.9e-59 232.6 143 82.5
FAN15G2434 Fragaria x ananassa HOM05D005136 ORTHO05D006619 1.9e-59 232.6 144 79.9
FvH4_2g08450 Fragaria vesca HOM05D005136 ORTHO05D006619 2.4e-59 232.3 144 79.9
FAN24G0166 Fragaria x ananassa HOM05D005136 ORTHO05D006619 2.4e-59 232.3 144 79.9
Potri.004G152700 Populus trichocarpa HOM05D005136 ORTHO05D006619 2.4e-59 232.3 145 80.7
FAN27G1698 Fragaria x ananassa HOM05D005136 ORTHO05D006619 4.1e-59 231.5 144 79.9
Manes.17G099700 Manihot esculenta HOM05D005136 ORTHO05D006619 5.4e-59 231.1 145 82.8
Cc02_g20820 Coffea canephora HOM05D005136 ORTHO05D006619 7.1e-59 230.7 144 82.6
Dinv42084 Davidia involucrata HOM05D005136 ORTHO05D006619 9.2e-59 230.3 144 80.6
Cc02_g17760 Coffea canephora HOM05D005136 ORTHO05D006619 1.2e-58 229.9 144 82.6
Thecc.02G123900 Theobroma cacao HOM05D005136 ORTHO05D006619 2.1e-58 229.2 144 79.9
CiPaw.05G062700 Carya illinoinensis HOM05D005136 ORTHO05D006619 2.7e-58 228.8 143 82.5
CSS0025161 Camellia sinensis var. sinensis HOM05D005136 ORTHO05D006619 3.5e-58 228.4 144 81.9
ClCG11G004520 Citrullus lanatus HOM05D005136 ORTHO05D006619 3.5e-58 228.4 144 80.6
Peaxi162Scf00346g00043 Petunia axillaris HOM05D005136 ORTHO05D006619 3.5e-58 228.4 144 79.9
Migut.B00252 Erythranthe guttata HOM05D005136 ORTHO05D006619 4.6e-58 228.0 144 79.2
Hma1.2p1_1375F.1_g278970 Hydrangea macrophylla HOM05D005136 ORTHO05D006619 4.6e-58 228.0 145 81.4
Hma1.2p1_3179F.1_g333696 Hydrangea macrophylla HOM05D005136 ORTHO05D006619 4.6e-58 228.0 145 81.4
MBI16_g37741_MAGBIO Magnolia biondii HOM05D005136 ORTHO05D006619 4.6e-58 228.0 144 82.6
Hund22263 Selenicereus undatus HOM05D005136 ORTHO05D006619 6.0e-58 227.6 144 81.9
MELO3C020986.2 Cucumis melo HOM05D005136 ORTHO05D006619 7.8e-58 227.3 143 80.4
CsaV3_2G014570 Cucumis sativus L. HOM05D005136 ORTHO05D006619 1.0e-57 226.9 144 79.9
MD05G1068400 Malus domestica HOM05D005136 ORTHO05D006619 1.0e-57 226.9 144 79.9
Sed0024996 Sechium edule HOM05D005136 ORTHO05D006619 1.0e-57 226.9 144 79.9
Atru.chr8.1229 Acer truncatum HOM05D005136 ORTHO05D006619 1.3e-57 226.5 144 82.6
QL11p043069 Quercus lobata HOM05D005136 ORTHO05D006619 5.1e-57 224.6 143 79.7
SalBow6G6037 Salvia bowleyana HOM05D005136 ORTHO05D006619 5.1e-57 224.6 144 79.2
Nitab4.5_0009564g0010 Nicotiana tabacum HOM05D005136 ORTHO05D006619 6.6e-57 224.2 144 79.2
CiPaw.06G136800 Carya illinoinensis HOM05D005136 ORTHO05D006619 8.6e-57 223.8 144 79.9
DCAR_026977 Daucus carota HOM05D005136 ORTHO05D006619 8.6e-57 223.8 144 77.8
COL.COLO4_32439 Corchorus olitorius HOM05D005136 ORTHO05D006619 1.5e-56 223.0 145 79.3
Oeu014338.1 Olea europaea HOM05D005136 ORTHO05D006619 1.5e-56 223.0 143 78.3
Cpa.g.sc31.66 Carica papaya HOM05D005136 ORTHO05D006619 1.9e-56 222.6 144 77.8
Eucgr.G00447 Eucalyptus grandis HOM05D005136 ORTHO05D006619 1.9e-56 222.6 144 77.8
PSO700G0271 Papaver somniferum HOM05D005136 ORTHO05D006619 2.5e-56 222.2 144 81.9
Aqoxy5G01670 Aquilegia oxysepala HOM05D005136 ORTHO05D006619 5.6e-56 221.1 147 78.2
Duzib132G0024 Durio zibethinus HOM05D005136 ORTHO05D006619 7.3e-56 220.7 144 77.8
Glyma.04G123300 Glycine max HOM05D005136 ORTHO05D006619 7.3e-56 220.7 145 80.0
MD10G1078600 Malus domestica HOM05D005136 ORTHO05D006619 7.3e-56 220.7 144 77.8
SGA_v2.0_scaffold106G30693 Striga asiatica HOM05D005136 ORTHO05D006619 1.2e-55 219.9 144 77.1
Prupe.8G100500 Prunus persica HOM05D005136 ORTHO05D006619 1.6e-55 219.5 144 79.2
Sopen08g026750 Solanum pennellii HOM05D005136 ORTHO05D006619 6.2e-55 217.6 145 77.2
PGSC0003DMG400026262 Solanum tuberosum HOM05D005136 ORTHO05D006619 6.2e-55 217.6 145 77.2
CAN.G1312.12 Capsicum annuum HOM05D005136 ORTHO05D006619 8.1e-55 217.2 144 77.1
Nn1g05055 Nelumbo nucifera HOM05D005136 ORTHO05D006619 8.1e-55 217.2 145 79.3
Lj5P199T42 Lonicera japonica HOM05D005136 ORTHO05D006619 1.4e-54 216.5 146 79.5
Lj3g0003138 Lotus japonicus HOM05D005136 ORTHO05D006619 1.4e-54 216.5 145 79.3
VMungo1215G0362 Vigna mungo HOM05D005136 ORTHO05D006619 1.4e-54 216.5 144 77.8
Phvul.002G127500 Phaseolus vulgaris HOM05D005136 ORTHO05D006619 4.0e-54 214.9 144 77.8
Solyc08g078240.4 Solanum lycopersicum HOM05D005136 ORTHO05D006619 4.0e-54 214.9 144 76.4
Ca_15377_v3 Cicer arietinum L. HOM05D005136 ORTHO05D006619 6.8e-54 214.2 145 77.2
Gohir.D12G018500 Gossypium hirsutum HOM05D005136 ORTHO05D006619 8.9e-54 213.8 145 76.6
Gorai.008G018800 Gossypium raimondii HOM05D005136 ORTHO05D006619 8.9e-54 213.8 145 76.6
Psat5g007800 Pisum sativum HOM05D005136 ORTHO05D006619 1.5e-53 213.0 144 77.1
Ah.01g016850 Amaranthus hybridus HOM05D005136 ORTHO05D006619 2.0e-53 212.6 142 77.5
Lalb_Chr23g0265461 Lupinus albus HOM05D005136 ORTHO05D006619 2.6e-53 212.2 145 73.1
EL10Ac9g21088 Beta vulgaris HOM05D005136 ORTHO05D006619 3.4e-53 211.8 137 80.3
Gohir.A12G017900 Gossypium hirsutum HOM05D005136 ORTHO05D006619 3.4e-53 211.8 145 75.9
Sc09g0004050 Simmondsia chinensis HOM05D005136 ORTHO05D006619 5.8e-53 211.1 146 75.3
MSTRG.16796 Avicennia marina HOM05D005136 ORTHO05D006619 7.6e-53 210.7 144 76.4
Lalb_Chr19g0138591 Lupinus albus HOM05D005136 ORTHO05D006619 7.6e-53 210.7 145 76.6
Psat5g103000 Pisum sativum HOM05D005136 ORTHO05D006619 1.3e-52 209.9 144 76.4
AUR62038311 Chenopodium quinoa HOM05D005136 ORTHO05D006619 3.8e-52 208.4 144 75.0
Medtr3g116260 Medicago truncatula HOM05D005136 ORTHO05D006619 4.9e-52 208.0 147 75.5
AUR62023928 Chenopodium quinoa HOM05D005136 ORTHO05D006619 1.4e-51 206.5 144 73.6
Glyma.09G214900 Glycine max HOM05D005136 ORTHO05D006619 2.4e-51 205.7 139 77.7
HPP92_013432 Vanilla planifolia HOM05D005136 ORTHO05D006619 4.1e-51 204.9 148 70.9
HPP92_027116 Vanilla planifolia HOM05D005136 ORTHO05D006619 4.1e-51 204.9 148 70.9
CANSAT11G0677 Cannabis sativa HOM05D005136 ORTHO05D006619 5.4e-51 204.5 153 72.5
HanXRQChr05g0152051 Helianthus annuus HOM05D005136 ORTHO05D006619 5.4e-51 204.5 144 75.7
PGR042G3747 Punica granatum HOM05D005136 ORTHO05D006619 5.4e-51 204.5 145 73.8
Lsat_1_v5_gn_7_89621 Lactuca sativa HOM05D005136 ORTHO05D006619 9.2e-51 203.8 144 72.9
ATR1120G109 Amborella trichopoda HOM05D005136 ORTHO05D006619 1.3e-49 199.9 146 69.9
THA.LOC104823526 Tarenaya hassleriana HOM05D005136 ORTHO05D006619 6.6e-49 197.6 148 71.6
TWI31G0294 Tripterygium wilfordii HOM05D005136 ORTHO05D006619 8.7e-49 197.2 150 70.0
TWI79G0765 Tripterygium wilfordii HOM05D005136 ORTHO05D006619 7.3e-48 194.1 150 71.3
Aa31LG1G2990 Aethionema arabicum HOM05D005136 ORTHO05D006619 3.1e-46 188.7 147 68.7
CARHR012080 Cardamine hirsuta HOM05D005136 ORTHO05D006619 4.0e-46 188.3 149 69.1
Gorai.005G228100 Gossypium raimondii HOM05D005136 ORTHO05D006619 5.2e-46 188.0 142 69.0
AL1G22940 Arabidopsis lyrata HOM05D005136 ORTHO05D006619 6.9e-46 187.6 151 67.5
AT1G11760 Arabidopsis thaliana HOM05D005136 ORTHO05D006619 2.0e-45 186.0 150 67.3
Gohir.D02G202838 Gossypium hirsutum HOM05D005136 ORTHO05D006619 2.0e-45 186.0 142 68.3
Sp1g10380 Schrenkiella parvula HOM05D005136 ORTHO05D006619 2.0e-45 186.0 150 66.7
Thhalv10008721m.g Eutrema salsugineum HOM05D005136 ORTHO05D006619 2.6e-45 185.7 154 66.2
Gohir.A03G179300 Gossypium hirsutum HOM05D005136 ORTHO05D006619 3.4e-45 185.3 142 68.3
Carub.0001s1142 Capsella rubella HOM05D005136 ORTHO05D006619 7.6e-45 184.1 152 67.1
Actinidia00512 Actinidia chinensis HOM05D005136 ORTHO05D006619 1.7e-44 183.0 115 81.7
BcaB03g13232 Brassica carinata HOM05D005136 ORTHO05D006619 1.7e-44 183.0 149 67.8
unitig_37.g12818 Utricularia gibba HOM05D005136 ORTHO05D006619 1.7e-44 183.0 149 65.8
BolC8t49124H Brassica oleracea HOM05D004968 ORTHO05D005922 3.2e-43 178.7 147 66.7
C08p14950 Brassica napus HOM05D004968 ORTHO05D005922 9.3e-43 177.2 147 66.0
PSO170G5319 Papaver somniferum HOM05D005136 ORTHO05D006619 7.8e-42 174.1 109 85.3
Prupe.5G020100 Prunus persica HOM05D005136 ORTHO05D006619 1.3e-41 173.3 151 60.9
Nitab4.5_0002601g0030 Nicotiana tabacum HOM05D005136 ORTHO05D006619 3.9e-41 171.8 109 83.5
Os10g0548400 Oryza sativa ssp. japonica HOM05D005136 ORTHO05D006619 5.1e-41 171.4 161 57.8
A08p33240 Brassica napus HOM05D004968 ORTHO05D005922 8.7e-41 170.6 140 67.1
BraA08t35243Z Brassica rapa HOM05D004968 ORTHO05D005922 8.7e-41 170.6 140 67.1
CSS0021040 Camellia sinensis var. sinensis HOM05D005136 ORTHO05D006619 5.6e-40 167.9 139 68.3
SalBow6G1117 Salvia bowleyana HOM05D005136 ORTHO05D006619 1.8e-38 162.9 105 80.0
RcHm_v2.0_Chr6g0264001 Rosa chinensis HOM05D005136 ORTHO05D006619 1.5e-37 159.8 100 80.0
Zm00001eb284000 Zea mays HOM05D005136 ORTHO05D006619 2.6e-37 159.1 135 63.0
TPR.G21542 Trifolium pratense HOM05D005136 ORTHO05D006619 4.5e-37 158.3 144 61.1
ECA236G0931 Erigeron canadensis HOM05D005136 ORTHO05D006619 1.7e-36 156.4 147 58.5
EL10Ac7g17776 Beta vulgaris HOM05D005136 ORTHO05D006619 8.4e-36 154.1 134 63.4
BcaB08g37416 Brassica carinata HOM05D005136 ORTHO05D006619 4.6e-34 148.3 143 58.0
SHI23962 Sapria himalayana HOM05D005136 ORTHO05D006619 3.0e-33 145.6 133 60.9
Atru.chr5.2947 Acer truncatum HOM05D005136 ORTHO05D006619 4.8e-31 138.3 89 80.9
Pp3c10_12480 Physcomitrium patens HOM05D005136 ORTHO05D006619 2.2e-28 129.4 149 50.3
EL10Ac8g18726 Beta vulgaris HOM05D006015 ORTHO05D007816 2.9e-28 129.0 92 70.7
EL10Ac9g21097 Beta vulgaris HOM05D006015 ORTHO05D006619 2.9e-28 129.0 92 70.7
CDE02G3080 Ceratophyllum demersum HOM05D005136 ORTHO05D006619 2.9e-28 129.0 84 76.2
SMO174G0113 Selaginella moellendorffii HOM05D005136 ORTHO05D006619 4.9e-28 128.3 134 51.5
Mapoly0003s0019 Marchantia polymorpha HOM05D005136 ORTHO05D006619 5.5e-27 124.8 147 49.7
EL10Ac1g02225 Beta vulgaris HOM05D005136 ORTHO05D006619 6.2e-23 111.3 162 45.1
Medtr3g116310 Medicago truncatula HOM05D005136 ORTHO05D006619 5.3e-22 108.2 78 69.2
Oeu014337.1 Olea europaea HOM05D005136 ORTHO05D006619 8.4e-20 100.9 85 55.3
Sp2g23220 Schrenkiella parvula HOM05D005136 ORTHO05D006619 8.4e-20 100.9 88 59.1
Psat4g095600 Pisum sativum HOM05D005136 ORTHO05D006619 1.1e-19 100.5 79 62.0
Hma1.2p1_0854F.1_g228935 Hydrangea macrophylla HOM05D005136 ORTHO05D006619 4.2e-19 98.6 71 67.6
Hma1.2p1_2665F.1_g326510 Hydrangea macrophylla HOM05D005136 ORTHO05D006619 4.2e-19 98.6 71 67.6
AagrBONN_evm.TU.Sc2ySwM_369.532 Anthoceros agrestis HOM05D005136 ORTHO05D006619 5.5e-19 98.2 134 41.8
COL.COLO4_32440 Corchorus olitorius HOM05D005136 ORTHO05D006619 3.0e-17 92.4 71 57.7
Thecc.02G123800 Theobroma cacao HOM05D005136 ORTHO05D006619 3.0e-17 92.4 71 60.6
Lj4g0027023 Lotus japonicus HOM05D005136 ORTHO05D006619 6.7e-17 91.3 144 43.1
Gohir.A03G179400 Gossypium hirsutum HOM05D005136 ORTHO05D006619 1.5e-16 90.1 71 59.2
Gohir.D02G202857 Gossypium hirsutum HOM05D005136 ORTHO05D006619 1.5e-16 90.1 71 60.6
Gorai.005G228200 Gossypium raimondii HOM05D005136 ORTHO05D006619 1.9e-16 89.7 71 59.2
Sc09g0004030 Simmondsia chinensis HOM05D005136 ORTHO05D006619 3.7e-15 85.5 68 66.2
Nitab4.5_0002541g0070 Nicotiana tabacum HOM05D005136 ORTHO05D024799 3.8e-12 75.5 72 52.8
Nitab4.5_0012262g0010 Nicotiana tabacum HOM05D005136 ORTHO05D006619 1.1e-11 73.9 72 51.4
Os07g0229100 Oryza sativa ssp. japonica HOM05D011003 ORTHO05D012370 1.2e-10 70.5 72 48.6
CAN.G1435.13 Capsicum annuum HOM05D005136 ORTHO05D024799 3.0e-09 65.9 69 43.5
ECA233G0803 Erigeron canadensis HOM05D005136 ORTHO05D006619 4.3e-08 62.0 122 38.5
Solyc09g082750.1 Solanum lycopersicum HOM05D005136 ORTHO05D024799 5.7e-08 61.6 72 40.3
Peaxi162Scf00316g00313 Petunia axillaris HOM05D005136 ORTHO05D006619 2.8e-07 59.3 51 56.9
HPP92_014777 Vanilla planifolia HOM05D005136 ORTHO05D006619 1.4e-06 57.0 72 40.3
Solyc09g082740.1 Solanum lycopersicum HOM05D005136 ORTHO05D024799 5.3e-06 55.1 72 38.9


User provided reference genes

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