Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g02123 Nelumbo nucifera HOM05D003428 ORTHO05D004131 9.6e-95 350.1 175 100.0
Nn1g03583 Nelumbo nucifera HOM05D003428 ORTHO05D004131 9.4e-82 307.0 162 95.1
TAR624G0497 Trochodendron aralioides HOM05D003428 ORTHO05D004131 7.7e-68 260.8 162 78.4
Dinv20034 Davidia involucrata HOM05D003428 ORTHO05D004131 8.2e-62 240.7 162 75.3
Hma1.2p1_1622F.1_g294060 Hydrangea macrophylla HOM05D003428 ORTHO05D004131 3.5e-60 235.3 162 73.5
Hma1.2p1_3566F.1_g336810 Hydrangea macrophylla HOM05D003428 ORTHO05D004131 3.5e-60 235.3 162 73.5
CiPaw.09G089300 Carya illinoinensis HOM05D003428 ORTHO05D004131 8.5e-59 230.7 162 69.8
Eucgr.E04091 Eucalyptus grandis HOM05D003428 ORTHO05D004131 1.5e-58 229.9 162 67.9
QL05p074042 Quercus lobata HOM05D003428 ORTHO05D004131 1.5e-58 229.9 162 68.5
Gohir.A06G147300 Gossypium hirsutum HOM05D003428 ORTHO05D004131 1.9e-58 229.6 176 64.2
Potri.004G018700 Populus trichocarpa HOM05D003428 ORTHO05D004131 1.9e-58 229.6 162 66.7
Gohir.D06G153100 Gossypium hirsutum HOM05D003428 ORTHO05D004131 2.5e-58 229.2 176 64.2
Gorai.010G179100 Gossypium raimondii HOM05D003428 ORTHO05D004131 2.5e-58 229.2 176 64.2
MBI02_g28339_MAGBIO Magnolia biondii HOM05D003428 ORTHO05D004131 2.5e-58 229.2 162 71.0
CSS0004273 Camellia sinensis var. sinensis HOM05D003428 ORTHO05D004131 5.5e-58 228.0 162 71.6
CSS0019319 Camellia sinensis var. sinensis HOM05D003428 ORTHO05D004131 5.5e-58 228.0 162 71.6
Duzib235G0114 Durio zibethinus HOM05D003428 ORTHO05D004131 5.5e-58 228.0 162 68.5
Thecc.06G217400 Theobroma cacao HOM05D003428 ORTHO05D004131 7.2e-58 227.6 162 67.9
Dinv13872 Davidia involucrata HOM05D003428 ORTHO05D004131 1.6e-57 226.5 171 69.0
Gorai.011G015900 Gossypium raimondii HOM05D003428 ORTHO05D004131 1.6e-57 226.5 170 64.7
Prupe.4G024000 Prunus persica HOM05D003428 ORTHO05D004131 2.1e-57 226.1 160 68.8
Aqoxy7G03064 Aquilegia oxysepala HOM05D003428 ORTHO05D004131 2.7e-57 225.7 160 65.6
ClCG03G004880 Citrullus lanatus HOM05D003428 ORTHO05D004131 8.0e-57 224.2 162 66.7
Potri.011G000200 Populus trichocarpa HOM05D003428 ORTHO05D004131 2.3e-56 222.6 162 66.7
Haze_06774 Corylus avellana HOM05D003428 ORTHO05D004131 4.0e-56 221.9 162 68.5
Sabra04G0010400 Salix brachista HOM05D003428 ORTHO05D004131 4.0e-56 221.9 194 56.2
GSVIVG01012655001 Vitis vinifera HOM05D003428 ORTHO05D004131 4.0e-56 221.9 162 69.8
Ciclev10014053m.g Citrus clementina HOM05D003428 ORTHO05D004131 5.2e-56 221.5 162 66.0
Rhsim02G0110400 Rhododendron simsii HOM05D003428 ORTHO05D004131 6.8e-56 221.1 162 69.1
Gohir.A10G014100 Gossypium hirsutum HOM05D003428 ORTHO05D004131 8.8e-56 220.7 169 63.3
Cfa000250 Carpinus fangiana HOM05D003428 ORTHO05D004131 2.0e-55 219.5 162 67.3
vmacro15816 Vaccinium macrocarpon HOM05D003428 ORTHO05D004131 4.4e-55 218.4 162 67.9
CiPaw.10G069400 Carya illinoinensis HOM05D003428 ORTHO05D004131 1.3e-54 216.9 160 65.6
MD10G1317800 Malus domestica HOM05D003428 ORTHO05D004131 1.7e-54 216.5 160 66.2
Manes.16G010100 Manihot esculenta HOM05D003428 ORTHO05D004131 1.7e-54 216.5 171 63.7
Gohir.D10G014100 Gossypium hirsutum HOM05D003428 ORTHO05D004131 2.2e-54 216.1 170 62.9
PSO210G3795 Papaver somniferum HOM05D003428 ORTHO05D004131 2.8e-54 215.7 162 66.0
PSO832G0075 Papaver somniferum HOM05D003428 ORTHO05D004131 2.8e-54 215.7 162 64.8
Sed0007172 Sechium edule HOM05D003428 ORTHO05D004131 2.8e-54 215.7 160 62.5
Phvul.003G077100 Phaseolus vulgaris HOM05D003428 ORTHO05D004131 3.7e-54 215.3 162 64.8
Glyma.07G259000 Glycine max HOM05D003428 ORTHO05D004131 4.8e-54 214.9 162 64.8
MELO3C002470.2 Cucumis melo HOM05D003428 ORTHO05D004131 1.1e-53 213.8 162 64.2
VMungo1215G2587 Vigna mungo HOM05D003428 ORTHO05D004131 1.1e-53 213.8 162 64.2
CsaV3_1G010910 Cucumis sativus L. HOM05D003428 ORTHO05D004131 1.8e-53 213.0 162 63.6
Actinidia11848 Actinidia chinensis HOM05D003428 ORTHO05D004131 3.1e-53 212.2 162 67.9
Glyma.17G015200 Glycine max HOM05D003428 ORTHO05D004131 4.1e-53 211.8 162 64.2
Os07g0520900 Oryza sativa ssp. japonica HOM05D003428 ORTHO05D004131 9.1e-53 210.7 162 65.4
PGR042G0159 Punica granatum HOM05D003428 ORTHO05D004131 2.0e-52 209.5 180 61.7
FvH4_3g02460 Fragaria vesca HOM05D003428 ORTHO05D004131 2.7e-52 209.1 160 63.8
Gohir.A05G168700 Gossypium hirsutum HOM05D003428 ORTHO05D004131 2.7e-52 209.1 162 63.6
Gorai.009G177000 Gossypium raimondii HOM05D003428 ORTHO05D004131 2.7e-52 209.1 162 63.6
Ca_21094_v3 Cicer arietinum L. HOM05D003428 ORTHO05D004131 3.5e-52 208.8 162 63.0
Ca_30202_v3 Cicer arietinum L. HOM05D003428 ORTHO05D004131 3.5e-52 208.8 162 63.0
FAN25G3463 Fragaria x ananassa HOM05D003428 ORTHO05D004131 3.5e-52 208.8 160 64.4
Gohir.D05G171900 Gossypium hirsutum HOM05D003428 ORTHO05D004131 4.5e-52 208.4 174 60.3
MD05G1342900 Malus domestica HOM05D003428 ORTHO05D004131 4.5e-52 208.4 160 65.6
Medtr4g131850 Medicago truncatula HOM05D003428 ORTHO05D004131 4.5e-52 208.4 162 63.0
Lj4g0005527 Lotus japonicus HOM05D003428 ORTHO05D004131 5.9e-52 208.0 162 63.6
RcHm_v2.0_Chr5g0003711 Rosa chinensis HOM05D003428 ORTHO05D004131 5.9e-52 208.0 160 64.4
Psat4g063040 Pisum sativum HOM05D003428 ORTHO05D004131 1.0e-51 207.2 162 62.3
Cc09_g01930 Coffea canephora HOM05D003428 ORTHO05D004131 6.5e-51 204.5 162 60.5
TWI38G0331 Tripterygium wilfordii HOM05D003428 ORTHO05D004131 6.5e-51 204.5 171 61.4
BcaC04g22357 Brassica carinata HOM05D003428 ORTHO05D004131 8.5e-51 204.1 173 59.0
C09p20200 Brassica napus HOM05D003428 ORTHO05D004131 8.5e-51 204.1 173 59.0
BolC9t54926H Brassica oleracea HOM05D003428 ORTHO05D004131 8.5e-51 204.1 173 59.0
Peaxi162Scf00262g00059 Petunia axillaris HOM05D003428 ORTHO05D004131 8.5e-51 204.1 162 63.0
Atru.chr10.2178 Acer truncatum HOM05D003428 ORTHO05D004131 1.1e-50 203.8 162 62.3
Aa31LG2G8980 Aethionema arabicum HOM05D003428 ORTHO05D004131 1.1e-50 203.8 162 63.0
BcaB07g31289 Brassica carinata HOM05D003428 ORTHO05D004131 1.1e-50 203.8 173 59.0
A09p16630 Brassica napus HOM05D003428 ORTHO05D004131 1.5e-50 203.4 173 59.0
BraA09t37300Z Brassica rapa HOM05D003428 ORTHO05D004131 1.5e-50 203.4 173 59.0
TPR.G37012 Trifolium pratense HOM05D003428 ORTHO05D004131 1.9e-50 203.0 162 61.7
Zm00001eb322860 Zea mays HOM05D003428 ORTHO05D004131 1.9e-50 203.0 162 61.7
Thhalv10023219m.g Eutrema salsugineum HOM05D003428 ORTHO05D004131 2.5e-50 202.6 164 60.4
CAN.G569.22 Capsicum annuum HOM05D003428 ORTHO05D004131 3.2e-50 202.2 162 62.3
Sp2g02690 Schrenkiella parvula HOM05D003428 ORTHO05D004131 3.2e-50 202.2 160 61.2
THA.LOC104809511 Tarenaya hassleriana HOM05D003428 ORTHO05D004131 3.2e-50 202.2 163 62.6
Nitab4.5_0010096g0010 Nicotiana tabacum HOM05D003428 ORTHO05D004131 4.2e-50 201.8 162 61.7
Aa31LG1G3130 Aethionema arabicum HOM05D003428 ORTHO05D004131 5.5e-50 201.4 162 61.1
HPP92_017608 Vanilla planifolia HOM05D003428 ORTHO05D004131 7.2e-50 201.1 162 62.3
Sc17g0007210 Simmondsia chinensis HOM05D003428 ORTHO05D004131 1.6e-49 199.9 162 59.9
EL10Ac8g20020 Beta vulgaris HOM05D003428 ORTHO05D004131 2.1e-49 199.5 162 58.6
AL2G14210 Arabidopsis lyrata HOM05D003428 ORTHO05D004131 3.6e-49 198.7 162 61.1
CSS0033465 Camellia sinensis var. sinensis HOM05D003428 ORTHO05D004131 3.6e-49 198.7 164 64.0
AUR62012675 Chenopodium quinoa HOM05D003428 ORTHO05D004131 4.7e-49 198.4 162 58.0
CARHR050470 Cardamine hirsuta HOM05D003428 ORTHO05D004131 6.1e-49 198.0 168 58.9
PGSC0003DMG400002079 Solanum tuberosum HOM05D003428 ORTHO05D004131 6.1e-49 198.0 162 61.1
AUR62021981 Chenopodium quinoa HOM05D003428 ORTHO05D004131 1.0e-48 197.2 162 58.0
Lalb_Chr15g0087431 Lupinus albus HOM05D003428 ORTHO05D004131 1.0e-48 197.2 162 59.3
ATR0752G216 Amborella trichopoda HOM05D003428 ORTHO05D004131 1.8e-48 196.4 160 61.9
Oeu063903.1 Olea europaea HOM05D003428 ORTHO05D004131 4.0e-48 195.3 162 59.3
AT1G61850 Arabidopsis thaliana HOM05D003428 ORTHO05D004131 5.2e-48 194.9 164 58.5
Carub.0002s0319 Capsella rubella HOM05D003428 ORTHO05D004131 5.2e-48 194.9 168 57.7
Hund23486 Selenicereus undatus HOM05D003428 ORTHO05D004131 1.2e-47 193.7 162 58.6
TWI38G0316 Tripterygium wilfordii HOM05D003428 ORTHO05D004131 1.2e-47 193.7 171 58.5
ECA236G4773 Erigeron canadensis HOM05D003428 ORTHO05D004131 1.5e-47 193.4 163 61.3
Manes.17G037100 Manihot esculenta HOM05D003428 ORTHO05D004131 1.5e-47 193.4 162 58.6
Solyc02g080340.3 Solanum lycopersicum HOM05D003428 ORTHO05D004131 1.5e-47 193.4 162 59.9
Sopen02g025040 Solanum pennellii HOM05D003428 ORTHO05D004131 1.5e-47 193.4 162 59.9
DCAR_004205 Daucus carota HOM05D003428 ORTHO05D004131 2.6e-47 192.6 163 62.6
Migut.M01297 Erythranthe guttata HOM05D003428 ORTHO05D004131 5.7e-47 191.4 171 59.6
CDE05G1926 Ceratophyllum demersum HOM05D003428 ORTHO05D004131 7.5e-47 191.0 167 59.9
arahy.Tifrunner.gnm1.ann1.YW42SM Arachis hypogaea HOM05D003428 ORTHO05D004131 1.7e-46 189.9 162 59.3
arahy.Tifrunner.gnm1.ann1.D341M5 Arachis hypogaea HOM05D003428 ORTHO05D004131 2.2e-46 189.5 162 59.3
HanXRQChr05g0129871 Helianthus annuus HOM05D003428 ORTHO05D004131 2.2e-46 189.5 165 59.4
Nn7g36944 Nelumbo nucifera HOM05D003428 ORTHO05D004131 2.8e-46 189.1 97 95.9
SalBow3G0064 Salvia bowleyana HOM05D003428 ORTHO05D004131 2.8e-46 189.1 171 57.9
SalBow3G1270 Salvia bowleyana HOM05D003428 ORTHO05D004131 2.8e-46 189.1 171 57.9
Cpa.g.c44049 Carica papaya HOM05D003428 ORTHO05D004131 6.3e-46 188.0 130 69.2
SGA_v2.0_scaffold7G03871 Striga asiatica HOM05D003428 ORTHO05D004131 2.4e-45 186.0 171 56.1
CDE05G1211 Ceratophyllum demersum HOM05D003428 ORTHO05D004131 1.0e-43 180.6 133 66.2
HanXRQChr15g0471381 Helianthus annuus HOM05D003428 ORTHO05D004131 2.3e-43 179.5 164 57.9
Lj2C271T3 Lonicera japonica HOM05D003428 ORTHO05D004131 5.0e-43 178.3 162 58.6
arahy.Tifrunner.gnm1.ann1.FVAC65 Arachis hypogaea HOM05D003428 ORTHO05D004131 8.6e-43 177.6 160 56.2
arahy.Tifrunner.gnm1.ann1.IL23TX Arachis hypogaea HOM05D003428 ORTHO05D004131 8.6e-43 177.6 160 56.2
Ah.09g235070 Amaranthus hybridus HOM05D003428 ORTHO05D004131 4.0e-40 168.7 183 48.1
Lsat_1_v5_gn_7_17340 Lactuca sativa HOM05D003428 ORTHO05D004131 6.8e-40 167.9 166 53.6
FAN21G0107 Fragaria x ananassa HOM05D003428 ORTHO05D004131 7.5e-39 164.5 163 55.2
ECA248G3692 Erigeron canadensis HOM05D003428 ORTHO05D004131 1.3e-38 163.7 160 54.4
HanXRQChr01g0003641 Helianthus annuus HOM05D003428 ORTHO05D004131 2.2e-38 162.9 161 54.0
Ah.14g088090 Amaranthus hybridus HOM05D003428 ORTHO05D004131 5.4e-37 158.3 162 48.8
COL.COLO4_31743 Corchorus olitorius HOM05D003428 ORTHO05D004131 1.7e-35 153.3 155 53.5
arahy.Tifrunner.gnm1.ann1.0P9V0B Arachis hypogaea HOM05D003428 ORTHO05D004131 1.9e-34 149.8 170 50.0
AagrBONN_evm.TU.Sc2ySwM_228.3176 Anthoceros agrestis HOM05D003428 ORTHO05D004131 4.3e-34 148.7 159 48.4
SMO367G0744 Selaginella moellendorffii HOM05D003428 ORTHO05D004131 1.6e-33 146.7 160 49.4
Hund21392 Selenicereus undatus HOM05D003428 ORTHO05D004131 1.5e-31 140.2 140 52.1
unitig_748.g7971 Utricularia gibba HOM05D003428 ORTHO05D004131 3.7e-30 135.6 166 48.2
Pp3c14_24720 Physcomitrium patens HOM05D003428 ORTHO05D004131 3.3e-26 122.5 161 42.2
Mapoly0096s0015 Marchantia polymorpha HOM05D003428 ORTHO05D004131 1.2e-25 120.6 174 40.8
Duzib192G0759 Durio zibethinus HOM05D003428 ORTHO05D004131 3.4e-23 112.5 75 66.7
CBR_g8995 Chara braunii HOM05D003428 ORTHO05D004131 1.4e-21 107.1 127 44.1
Gohir.A09G069400 Gossypium hirsutum HOM05D003428 ORTHO05D004131 7.8e-20 101.3 66 66.7
Lsat_1_v5_gn_1_124260 Lactuca sativa HOM05D003428 ORTHO05D004131 3.9e-19 99.0 86 54.7
Gohir.D09G069300 Gossypium hirsutum HOM05D003428 ORTHO05D004131 8.6e-19 97.8 66 63.6
Gorai.006G083500 Gossypium raimondii HOM05D003428 ORTHO05D004131 8.6e-19 97.8 66 63.6
Gohir.A09G069300 Gossypium hirsutum HOM05D003428 ORTHO05D004131 7.3e-18 94.7 68 63.2
Gohir.D09G069200 Gossypium hirsutum HOM05D003428 ORTHO05D004131 7.3e-18 94.7 68 63.2
Gorai.006G083400 Gossypium raimondii HOM05D003428 ORTHO05D004131 7.3e-18 94.7 68 63.2
Lj1A1228T72 Lonicera japonica HOM05D003428 ORTHO05D004131 3.9e-11 72.4 75 50.7
Lsat_1_v5_gn_8_26380 Lactuca sativa HOM05D003428 ORTHO05D004131 3.3e-10 69.3 41 75.6
MCO07G720 Micromonas commoda HOM05D003428 ORTHO05D004131 3.6e-09 65.9 127 33.9
Cre10.g425100 Chlamydomonas reinhardtii HOM05D003428 ORTHO05D004131 2.4e-08 63.2 70 44.3


User provided reference genes

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